Change Log - Mantis

Slicer4 - Change Log
Slicer4 - Slicer 4.3.0 ====================== - 0003051: [Core: Extensions] CLI from extensions are not working (jcfr) - resolved. - 0003096: [Core: Building (CMake, Superbuild)] Can not Run debug in Visual studio 2008 (jcfr) - resolved. - 0002326: [Core: Base Code] Save Data should always make unique filenames (pieper) - resolved. - 0003103: [Core: Building (CMake, Superbuild)] Slicer does not build on Ubuntu 13.04 (jcfr) - resolved. - 0002992: [Core: MRML] Crash when OpenIGTLinkIF-created node is deleted (tokuda) - resolved. - 0002761: [Core: GUI] Add dental CBCT sample data (pieper) - resolved. - 0002996: [Module DICOM] DICOM module not loading volume (pieper) - resolved. - 0003012: [Module Editor] Eraser button does not work (pieper) - resolved. - 0003104: [Module ThresholdScalarVolume] Threshold scalar volume should input doubles (pieper) - resolved. - 0003064: [Core: Building (CMake, Superbuild)] error PRJ0019: A tool returned an error code from "Performing build step for 'Slicer'" (jcfr) - resolved. - 0001180: [Core: Base Code] Slicer might load the wrong Python and other dlls (jcfr) - resolved. - 0003086: [Core: Base Code] Hook fails on windows (jcfr) - resolved. - 0003088: [Core: Extensions] Extensions cannot be installed because of continuous refreshing (jcfr) - resolved. - 0002946: [Core: MRML] Add Point/Line thickness for models (finetjul) - resolved. - 0003029: [Module DICOM] Image spacing not read correctly in Slicer 4.2.2 (pieper) - resolved. - 0002954: [Core: Building (CMake, Superbuild)] Missing frameworks when building extension on MacOSX (jcfr) - resolved. - 0003045: [Core: Extensions] Extension Manager - Open external link in the browser (jcfr) - resolved. - 0002058: [Core: Building (CMake, Superbuild)] Scripted module should be located in their own source directory (jcfr) - resolved. - 0003065: [Core: Base Code] ImportError: No module named Tkinter (jcfr) - resolved. - 0002002: [Core: Building (CMake, Superbuild)] Support for VS2010 (Lchauvin) - resolved. - 0003036: [Module ModelMaker] Can't save as .stl or .ply from Grayscale Model Maker in Windows 64 bit version (nicole) - resolved. - 0003007: [Core: GUI] Models are not listed in the models module (nicole) - resolved. - 0003002: [Core: Usability] Keyboard shortcuts. (pieper) - resolved. - 0002932: [Core: Usability] Drawing in Slicer4 (pieper) - resolved. - 0003001: [Core: Usability] Slicer4 (and 3) reset each time you leave editor module (pieper) - resolved. - 0003041: [Core: Building (CMake, Superbuild)] Nightly build: shared library path is messed up (jcfr) - resolved. - 0003015: [Core: Command Line Modules (Modules/CLI)] can't run CLI because ITKv4 IO objects not registered (jcfr) - resolved. - 0003016: [Core: Base Code] Saving to network drive/mount does not work (vtkPNGWriter, both Linux and Windows) -- and no error message (jcfr) - resolved. - 0002007: [Core: Building (CMake, Superbuild)] Build against ITKv4 and remove ITKv3 (jcfr) - resolved. - 0002801: [Core: Building (CMake, Superbuild)] Check Slicer packaging on Windows 32bit when built against ITKv4 (pieper) - resolved. - 0002883: [Core: Building (CMake, Superbuild)] Fix FindDCMTK.cmake provided by ITKv4 (hjmjohnson) - resolved. - 0002806: [Core: Extensions] Check that extensions can be built with Slicer ITKv4 (jcfr) - resolved. - 0002115: [Core: Building (CMake, Superbuild)] Mechanism to customize Slicer package name depending on build option (jcfr) - resolved. - 0002804: [Core: Building (CMake, Superbuild)] Check Slicer packaging on MacOSX when built against ITKv4 (hjmjohnson) - resolved. - 0002114: [Core: Building (CMake, Superbuild)] Ensure Slicer can be compiled against ITKv4 on both Windows 32 and 64 bit (mccormic) - resolved. - 0002813: [Core: Base Code] Restore performance of ITKv4 Factory (mccormic) - resolved. - 0002116: [Core: Extensions] Improve extension framework to differentiate extension build against different Slicer. (jcfr) - resolved. - 0002807: [Core: Building (CMake, Superbuild)] itkTestMain.h is not available anymore in ITKv4. (hjmjohnson) - resolved. - 0002805: [Core: Building (CMake, Superbuild)] Ensure the DCMTK external project of Slicer is used to build ITKv4 (hjmjohnson) - resolved. - 0002800: [Core: Building (CMake, Superbuild)] Create External_DWIConvert.cmake (hjmjohnson) - resolved. - 0002884: [Core: Building (CMake, Superbuild)] Windows / ITKv4 - When building, it complains with "illegal parameter from the moc.exe" (jcfr) - closed. - 0002900: [Core: Base Code] cannot load volumes in release build of Slicer4 ITKv4 (jcfr) - resolved. - 0001347: [Core: GUI] Small bugs in the module selector (crmullin) - resolved. - 0002698: [Core: Building (CMake, Superbuild)] Git clone warning - Invalid escape sequence \U (jcfr) - resolved. - 0002978: [Core: Building (CMake, Superbuild)] Build error & unstable executable on linux (jcfr) - resolved. - 0002976: [Core: Extensions] Extensions Manager hangs when a category is selected (jcfr) - resolved. - 0002889: [Core: Building (CMake, Superbuild)] Setup dashboard script to build Slicer packages + extensions from "factory-south" (crmullin) - resolved. - 0002882: [Core: Building (CMake, Superbuild)] Expose variable like vtkITK_INCLUDE_DIRS in SlicerConfig.cmake (jcfr) - resolved. - 0002957: [Core: Building (CMake, Superbuild)] CMake hangs on OSX (jcfr) - resolved. - 0002961: [Core: Packaging] license file is missing from windows installer (jcfr) - resolved. - 0002950: [Core: Base Code] Depends on VTK 5.10.1 (jcfr) - resolved. - 0002888: [Core: Building (CMake, Superbuild)] If -DSlicer_USE_GIT_PROTOCOL:BOOL=OFF is passed, system should check if "insteadOf" rule is set for ITK (crmullin) - resolved. - 0001916: [Module Annotations] Exporting and re-importing a ROI fails (alexy) - resolved. - 0002639: [Core: Base Code] Slicer does not seem to unload old volumes (alexy) - resolved. - 0002440: [Module Diffusion] Tractography Display: various GUI elements fail (demian) - resolved. - 0002746: [Core: MRML] Dangerous duplicate code in vtkMRMLGlyphableVolumeSliceDisplayNode (demian) - resolved. - 0001389: [Module Diffusion] Tract Visibility (alexy) - resolved. - 0002764: [Core: Base Code] Running test AtlasTest lead to some suspiscious warning "There is a danger here" (alexy) - resolved. - 0002759: [Module Endoscopy] Endoscopy view does not work after closing and opening a scene (alexy) - resolved. - 0002758: [Core: MRML] camera referential not loaded (alexy) - resolved. - 0002695: [Core: Building (CMake, Superbuild)] Update DCMTK version to fix VS2010 build issue (jcfr) - resolved. - 0002890: [Core: Building (CMake, Superbuild)] Migrate Windows VM on "factory-south" (crmullin) - resolved. - 0002290: [Module DICOM] Importing DICOM - "return key" should not be bound to "ok" (finetjul) - resolved. - 0002862: [Core: Building (CMake, Superbuild)] Failure to recognize qmake on cmake (jcfr) - resolved. - 0002803: [Core: Building (CMake, Superbuild)] Check Slicer packaging on Linux when built against ITKv4 (hjmjohnson) - resolved. - 0002860: [Core: Building (CMake, Superbuild)] Build Fail during libPythonQt, cannot recognize QtWebKit (jcfr) - resolved. - 0002897: [Core: Base Code] Fix Scalar overlay in Models module (finetjul) - resolved. - 0002647: [Core: Building (CMake, Superbuild)] Create a macro named slicerMacroBuildScriptedModule (jcfr) - resolved. - 0002371: [Core: Building (CMake, Superbuild)] Update factory ITKv4 nightly script to enable packaging (crmullin) - resolved. - 0002372: [Core: Building (CMake, Superbuild)] Coordinate ITKv4 packaging with maintainer of download.slicer.org (crmullin) - resolved. - 0002115: [Core: Building (CMake, Superbuild)] Mechanism to customize Slicer package name depending on build option (jcfr) - resolved. - 0002381: [Module Diffusion] color of glyphs on slices looks wrong (demian) - resolved. - 0001726: [Core: Documentation & Wiki] Update link allowing to download Qt Binaries (jcfr) - resolved. - 0001727: [Core: GUI] Improve QProxyStyle (finetjul) - resolved. - 0002927: [Core: Building (CMake, Superbuild)] Update SimpleITK to 0.6.1 (jcfr) - resolved. - 0002899: [Core: Building (CMake, Superbuild)] Python library gets installed in wrong directory on OpenSuse 12.2 (sankhesh) - resolved. - 0002876: [Core: Extensions] Longitudinal PET/CT Analysis is marked as installed but does not show up in the module list (jcfr) - resolved. - 0001735: [Module Annotations] Annotation widget does not maintain collapsed state after refresh. (nicole) - resolved. - 0002335: [Core: Extensions] Add support for tutorial URL (jcfr) - closed. - 0003098: [Core: Scripting (Wrapping, Python)] When launching a slicelet, infinite windows of the slicelet spawn (jcfr) - closed. - 0002999: [Core: GUI] Default slice position is not centered on the slice (pieper) - closed. - 0003090: [Module Editor] Paint effect is incorrect on rotated volumes (pieper) - closed. - 0002839: [Core: Base Code] random double free errors in Qt (pieper) - closed. - 0002963: [Core: Base Code] crash on exit - dcmtk global dictionary (pieper) - closed. - 0003008: [Core: Command Line Modules (Modules/CLI)] Executable CLI modules fail to start (jcfr) - closed. - 0003040: [Core: Building (CMake, Superbuild)] Building DCMTK in shared mode prevents crash at startup (jcfr) - closed. - 0003089: [Core: Extensions] SlicerAppStore website is broken (jcfr) - closed. - 0003060: [Core: MRML] Crash when show/hide models or annotations (alexy) - closed. - 0002834: [Core: Base Code] Consolidate svn and git hooks (sankhesh) - closed. - 0002020: [Core: Building (CMake, Superbuild)] Report revision number at configuration time (jcfr) - closed. - 0002046: [Core: Base Code] Support for Qt 4.8.1 (jcfr) - closed. - 0003066: [Module DICOM] The module will not start. (pieper) - closed. - 0002557: [Core: GUI] Models hierarchy: whenever the eye is clicked on a node complex hierarchy, the whole interface refreshes collapsing all nodes (sankhesh) - closed. - 0002453: [Module Editor] Non-closed drawing contour line remains solid when changing slices (pieper) - closed. - 0002421: [Module Editor] 'e' keystroke does not work (pieper) - closed. - 0002928: [Core: Usability] eye-dropper keyboard shortcut (pieper) - closed. - 0003052: [Core: Building (CMake, Superbuild)] cannot load any sample data - urllib not build correctly (jcfr) - closed. - 0003023: [Module Diffusion] DWI convert doesn't work as a shared library (hjmjohnson) - closed. - 0003046: [Core: MRML] Getting the TransformNodeID from vtkMRMLTransformableNode returns the StorageNodeID (alexy) - closed. - 0002983: [Module DICOM] DICOM browser doesn't show up on clicking the DCM button when DICOM module is active (pieper) - closed. - 0003042: [Module Editor] merge and build stopped building models (jcfr) - closed. - 0003037: [Core: Building (CMake, Superbuild)] Change Repositories for OpenIGTLink and OpenIGTLinkIF (jcfr) - closed. - 0002869: [Core: MRML] Direction Matrix not exposed in volume info widget (wangk) - closed. - 0002881: [Core: MRML] qMRMLVolumeInfoWidget not updated after MRML node removed (alexy) - closed. - 0002936: [Module DICOM] Multiple RT objects with same type not distinguishable in DICOM module (pieper) - closed. - 0002333: [Core: Extensions] Ensure scroll bar is displayed in Extensions Manager dialog (jcfr) - closed. - 0002969: [Core: GUI] Add one-up quantitative layout (millerjv) - closed. - 0002878: [Core: GUI] slice locations are at pixel boundaries instead of pixel centers after SnapSliceOffsetToIJK (pieper) - closed. - 0002951: [Core: Base Code] Update test framework to call initialize ITKIOFactoryRegistration when needed (jcfr) - closed. - 0002956: [Core: GUI] color picker initial color is black the first time the color dialog opens (finetjul) - closed. - 0002879: [Core: Base Code] Unable to load dose volumes exported by Xio (pieper) - closed. - 0002802: [Core: Building (CMake, Superbuild)] Check Slicer packaging on Windows 64bit when built against ITKv4 (pieper) - closed. - 0001822: [Module Editor] Split volume results corrupted (pieper) - closed. - 0001298: [Module VolumeRendering] ROI rotation does not apply to VR cropping (finetjul) - closed. - 0001283: [Core: Base Code] trying to zoom has strange consequences (millerjv) - closed. - 0001413: [Module Annotations] The glyphs for fiducials look different in the slice viewers and the compare viewers (millerjv) - closed. - 0002332: [Module Diffusion] slicer intersection of streamlines has stopped working (inorton) - closed. - 0001631: [Core: GUI] slice visibility in 3d viewer is wrong (millerjv) - closed. - 0002315: [Core: Usability] OpenIGTLink socket useless in reloaded scene (tokuda) - closed. - 0002602: [Module VolumeRendering] transfer function is not initialized properly for FA volumes (alexy) - closed. - 0002295: [Module Diffusion] tubes reder defaults are different (demian) - closed. - 0002826: [Core: Extensions] pagination in extension wizard is not appropriate (jcfr) - closed. - 0001537: [Core: Base Code] Exit from tcl adapter causes seg fault when exiting program (jcfr) - closed. - 0002783: [Core: MRML] Color names that contain spaces are not correctly set when loading a scene (alexy) - closed. - 0002790: [Core: Packaging] nightlies version is displayed 4.2.0 (jcfr) - closed. - 0002376: [Core: Base Code] Inconsistent behavior of Slicer launcher command options output across systems (jcfr) - closed. - 0002812: [Module DICOM] Initialize default location for DICOM DB (pieper) - closed. - 0002863: [Core: GUI] Error message "File ... qSlicerBaseQTCore_fr.qm" doesn't exist." when starting Slicer (jcfr) - closed. - 0002848: [Core: Extensions] Extension fails to initialize on Mac (jcfr) - closed. - 0002846: [Module VolumeRendering] volume renderer does not initialize properly with multivolume (finetjul) - closed. - 0002840: [Core: GUI] when add new hierarchy nodes, they're collapsed in the tree view by default (sankhesh) - closed. - 0002833: [Core: Extensions] itkTestMain.h is missing in ITKv4 (jcfr) - closed. - 0002768: [Core: Extensions] Slicerappstore - Fix filtering (jcfr) - closed. - 0002824: [Module Diffusion] perpendicular diffusivity scalar extraction does not work (demian) - closed. - 0002795: [Module DICOM] thumbnails do not show in the dicom browser (finetjul) - closed. - 0002247: [Core: Base Code] Rename qSlicerMODULE_NAMEModule.ui into qSlicerMODULE_NAMEModuleWidget.ui (crmullin) - closed. - 0001765: [Core: Building (CMake, Superbuild)] fresh build needs to run twice to build numpy (pieper) - closed. - 0001891: [Core: Command Line Modules (Modules/CLI)] General Registration BRAINS: It is not possible to set (ROI)MaskingInputFixed as well as (ROI)MaskingInputMoving (hjmjohnson) - closed. - 0002871: [Core: Base Code] crash in error log during multi-threaded imports (jcfr) - closed. - 0002911: [Core: Extensions] extension manager lists many extensions multiple times (jcfr) - closed. - 0002240: [Core: Usability] Mounted volumes are not accessible in "Add file" dialog on Mac (sankhesh) - closed. - 0002577: [Module Diffusion] Problems with the tractography display (demian) - closed. - 0002909: [Core: GUI] Harden Transform from Transforms module (finetjul) - closed. - 0002874: [Core: Base Code] Designer launched with the Slicer plugins crashes on Windows (finetjul) - closed. - 0002448: [Core: Building (CMake, Superbuild)] Can't compile with CLang on OS X (hjmjohnson) - closed. - 0001584: [Core: GUI] Simplified initial presentation of the brainsfit module (hjmjohnson) - closed. - 0001502: [Core: Usability] Load images from command line no longer works (crmullin) - closed.Slicer4 - Slicer 4.2.2-1 ======================== - 0002720: [Core: Extensions] can't install extensions on windows (jcfr) - resolved. - 0002774: [Core: Building (CMake, Superbuild)] SlicerApp-real does not work in QtCreator (jcfr) - resolved. - 0002785: [Core: GUI] Slice disappears in 3D viewer when translating image (alexy) - resolved. - 0002533: [Core: Extensions] Failed to open launcher settings is reported when installing extension (jcfr) - resolved. - 0002811: [Core: Base Code] crash loading dicom volume on windows (pieper) - resolved. - 0002767: [Core: Extensions] Extension test pass despite of "error: Application does NOT exists []" (jcfr) - resolved. - 0001958: [Core: Extensions] extension from one version shows up in other version (jcfr) - resolved. - 0002143: [Core: Extensions] Extend Additional Launcher Settings to support user specific settings (jcfr) - resolved. - 0002782: [Core: Building (CMake, Superbuild)] Failed to build on MacOSX 10.8 - DYLD_ environment variables being ignored because main executable (/bin/ps) is setuid or setgi (jcfr) - resolved. - 0001635: [Core: Base Code] Failed to execute CLI executable - Missing _nv000007gl symbol (jcfr) - resolved. - 0002439: [Core: Usability] Nightly Slicer crashes trying to load modules compiled against local Slicer build (jcfr) - closed. - 0002791: [Core: Extensions] Re-enabling of incompatible extensions (jcfr) - closed. - 0001536: [Core: Usability] Model slice intersections do not work (alexy) - closed. - 0001655: [Core: Base Code] Allow different module paths definition for each Slicer instance (jcfr) - closed. - 0002797: [Module VolumeRendering] Volume rendering doesn't handle short scalar range images (finetjul) - closed. - 0002773: [Core: Base Code] Crash when running a CLI module using ITKv4 (finetjul) - closed. - 0002814: [Core: Base Code] Crash when loading scalar DICOM volume (millerjv) - closed. - 0002710: [Core: Tutorial Testing] Abdominal atlas color file is all black (nicole) - closed. - 0002821: [Module Annotations] fiducials move on mouse over (pieper) - closed.Slicer4 - Slicer 4.2.1 ====================== - 0002528: [Module Diffusion] Slicer crashes when LUT changed (alexy) - resolved. - 0002755: [Core: MRML] Nodes are not correctly maintained under a transformation when the scene is reopened (alexy) - resolved. - 0002732: [Core: MRML] Move LightBox proxy to abstract displayable manager for easier re-use (millerjv) - resolved. - 0002512: [Core: Tutorial Testing] Tutorial 10 - Image-guided prostate interventions (pieper) - resolved. - 0002760: [Core: QtTesting] building with QT Testing turned off fails (jcfr) - resolved. - 0002735: [Core: Building (CMake, Superbuild)] Remove unused Tcl files from Base/GUI (jcfr) - resolved. - 0002535: [Core: Base Code] slicer can hang after restart due to full output buffer (sankhesh) - resolved. - 0002734: [Extension TubeTk / Module SpatialObject] Slicer freezes when loading .tre file (mccormic) - resolved. - 0002694: [Core: Scripting (Wrapping, Python)] pip won't install on Slicer, on Mac OS X (jcfr) - resolved. - 0002715: [Module DICOM] Cryptic error message the first time a DICOM database is accessed (pieper) - resolved. - 0002149: [Core: Documentation & Wiki] improve DICOM module documentation (pieper) - resolved. - 0002731: [Core: Building (CMake, Superbuild)] ITK configuration fails behind firewall (jcfr) - resolved. - 0002374: [Module Diffusion] glyph display on slices is broken (finetjul) - closed. - 0002748: [Core: Base Code] Volumes loaded from DICOM marked as modified on save (pieper) - closed. - 0002719: [Core: Base Code] Slicer.ini file being over written by running tests that use the --testing flag (jcfr) - closed. - 0002744: [Core: Usability] MultiVolume -- DCE studies are not recognized as multivolume (fedorov) - closed. - 0002750: [Core: MRML] Re-loading scene: transform is not applied (alexy) - closed. - 0002742: [Core: Chart] Crash when setting chart node to chart view before adding an array (millerjv) - closed. - 0002733: [Core: Documentation & Wiki] download stats are not displaying for last month or last week/day for stable releases (jcfr) - closed. - 0002757: [Core: GUI] icons have disappeared (jcfr) - closed. - 0002523: [Core: Documentation & Wiki] Document process to upload dataset on MIDAS (jcfr) - closed. - 0002723: [Core: Extensions] Investigate why SVN_TRUST_CERT 1 does NOT work as expected for SlicerRT and plastimatch (jcfr) - closed. - 0002724: [Extension TubeTk / Module SpatialObject] Bundle SpatialObject loadable module into TubeTk extension (crmullin) - closed. - 0002725: [Core: MRML] Transform hierarchy is not saved in the scene file (alexy) - closed. - 0002703: [Extension TubeTk / Module SpatialObject] Document TubeTk extension (crmullin) - closed.Slicer4 - Slicer 4.2.0 ====================== - 0002471: [Core: MRML] Slice mode "FOV matches 2D spacing matches Volume" produces jumps in slices (alexy) - resolved. - 0002483: [Core: Base Code] test py_LoadVolumeDisplaybleSceneModelClose crashes (finetjul) - resolved. - 0002488: [Core: Base Code] Harden transform doesn't work on models (finetjul) - resolved. - 0002482: [Module ModelMaker] Ghost models in the 3D view cannot be deleted (nicole) - resolved. - 0002495: [Core: Documentation & Wiki] Doxygen HTML does not contain class descriptions. (mccormic) - resolved. - 0002545: [Core: GUI] crash closing scene (assert) (finetjul) - resolved. - 0002518: [Core: Base Code] Crash on closing when in "3D only" layout (pieper) - resolved. - 0002578: [Core: GUI] Transform Widget: Simultaneously transforming multiple nodes crashes Slicer (finetjul) - resolved. - 0002613: [Core: Scripting (Wrapping, Python)] Wrong NodeIDs for PET Color table (jcfr) - resolved. - 0002620: [Module VolumeRendering] Volume rendering module creates invalid annotation ROI (finetjul) - resolved. - 0002607: [Core: Base Code] A particular nrrd file causes Slicer to crash when switching to Volumes module (mccormic) - resolved. - 0002609: [Core: GUI] Modules in Module selector are case sorted (sankhesh) - resolved. - 0002650: [Core: Base Code] Crash with editor/ leveltracing/Threshold (pieper) - resolved. - 0002515: [Core: Tutorial Testing] Tutorial 12 - Knee Atlas (nicole) - resolved. - 0002514: [Core: Tutorial Testing] Tutorial 13 - Abdominal Atlas (nicole) - resolved. - 0002517: [Core: Tutorial Testing] Classroom Course 2 (pieper) - resolved. - 0002502: [Core: Tutorial Testing] Tutorial 0 - 3D Visualization of DICOM images for Radiology Applications (millerjv) - resolved. - 0002551: [Core: Tutorial Testing] Tutorial 0 - Slices in 3D view are too far anterior and superior (from old scenes) - closed. - 0002555: [Core: Tutorial Testing] Tutorial 0 - Scene-liver.mrml - slices not displayed - closed. - 0002554: [Core: Tutorial Testing] Tutorial 0 - slicer4minute.mrml - clipping model with slice planes doesn't work - closed. - 0002556: [Core: Tutorial Testing] Tutorial 0 - Scene-liver.mrml - inquiries utilizing slice plane and models do not work - closed. - 0002552: [Core: Tutorial Testing] Tutorial 0 - slicer4minute.mrml - slices are not display in Slice Viewers - closed. - 0002555: [Core: Tutorial Testing] Tutorial 0 - Scene-liver.mrml - slices not displayed - closed. - 0002554: [Core: Tutorial Testing] Tutorial 0 - slicer4minute.mrml - clipping model with slice planes doesn't work - closed. - 0002556: [Core: Tutorial Testing] Tutorial 0 - Scene-liver.mrml - inquiries utilizing slice plane and models do not work - closed. - 0002552: [Core: Tutorial Testing] Tutorial 0 - slicer4minute.mrml - slices are not display in Slice Viewers - closed. - 0002511: [Core: Tutorial Testing] Tutorial 9 - Longitudinal analysis of meningioma growth (jcfr) - resolved. - 0002700: [Core: Tutorial Testing] Tutorial 9 - Part3 - Annotation ROI is not visible (fedorov) - resolved. - 0002589: [Core: Tutorial Testing] Tutorial 9 - Part3 - Exiting and re-entering module does NOT re-display volume rendered tumor (fedorov) - resolved. - 0002621: [Module VolumeRendering] Switching to VR after manually creating display node causes crash (finetjul) - closed. - 0002590: [Core: Tutorial Testing] Tutorial 9 - Part3 - Switch module -> Closing slicer leads to crash (jcfr) - resolved. - 0002587: [Core: Tutorial Testing] Tutotorial 9 - Part3 - Volume metric changes are not displayed (fedorov) - resolved. - 0002598: [Core: Tutorial Testing] Tutorial 9 - Part3 - Going back and forth btw step2 and step3 create additional ROI node (fedorov) - resolved. - 0002707: [Core: GUI] Crash via assert when trying to save a scene opened from MRB (alexy) - resolved. - 0002701: [Module Annotations] Visibility of Annotation node programmatically added can NOT be toggled (nicole) - resolved. - 0002561: [Core: Building (CMake, Superbuild)] Create script allowing to "version" na-mic data tree (sankhesh) - resolved. - 0002349: [Core: Extensions] No output is submitted to the dashboard if a module generic test fails (jcfr) - resolved. - 0002672: [Core: Extensions] Add TubeTK extension (crmullin) - resolved. - 0001226: [Core: Base Code] Download sample data fails after internet connection failure and re-connect (jcfr) - resolved. - 0002693: [Core: Building (CMake, Superbuild)] Update BRAINSTools and fix install of lib and dev files (jcfr) - resolved. - 0002473: [Module Annotations] Fiducials appear on incorrect slice if visibility is enabled in data module (nicole) - resolved. - 0002692: [Core: Building (CMake, Superbuild)] Rename option Slicer_BUILD_EXTENSIONS into Slicer_BUILD_TESTING_EXTENSIONS (jcfr) - resolved. - 0002688: [Core: Building (CMake, Superbuild)] Fixup packaging of Tcl libraries (jcfr) - resolved. - 0002689: [Core: Building (CMake, Superbuild)] Fixup packaging of Python modules/libraries (jcfr) - resolved. - 0001935: [Core: Base Code] image interpoaltion issues in 2d views (millerjv) - resolved. - 0001931: [Core: GUI] Disabling antialisasing doesn' t work (millerjv) - resolved. - 0002205: [Core: GUI] volume stuck inside transform node. Won't come back out (finetjul) - resolved. - 0002096: [Core: GUI] transform node disappears when volume is dropped inside (finetjul) - resolved. - 0001723: [Core: GUI] qMRMLTreeView::fitToVisibleIndexes should support drag&drop when view is higher than what's visible (finetjul) - resolved. - 0002663: [Module Annotations] Cannot put down fiducials on windows (nicole) - resolved. - 0001440: [Core: GUI] Auto single step for the threshold sliders in the Volumes module (finetjul) - resolved. - 0001487: [Module VolumeRendering] if volume mapper fails, can't switch back (finetjul) - resolved. - 0002664: [Module Annotations] crash on second point of ruler (nicole) - resolved. - 0002657: [Core: Extensions] ExperimentalUpload target ignore CMAKE_{C/CXX}_COMPILER (jcfr) - resolved. - 0002348: [Core: Extensions] Extension tests all fail on Windows in Debug mode (jcfr) - resolved. - 0002643: [Core: Extensions] Icon url containaing "ampersand" are not properly manager (jcfr) - resolved. - 0002584: [Core: GUI] Transform Widget: min/max setting changes the translation values when selecting a new transform (sankhesh) - resolved. - 0002633: [Core: Building (CMake, Superbuild)] files installed but not found (jcfr) - resolved. - 0002505: [Core: Tutorial Testing] Tutorial 3 - Volume Rendering 0000001 Head (sankhesh) - resolved. - 0002507: [Core: Tutorial Testing] Tutorial 5 - Volume Rendering 0000003 Thorax (sankhesh) - resolved. - 0002624: [Core: Building (CMake, Superbuild)] X server is crashing on the Linux VMs (jcfr) - resolved. - 0002468: [Core: Building (CMake, Superbuild)] Not all error are reported on CDash (jcfr) - resolved. - 0002627: [Core: Building (CMake, Superbuild)] Link module python library with dependent module python libraries (jcfr) - resolved. - 0002493: [Core: Building (CMake, Superbuild)] Nightly extension builds are not available (jcfr) - resolved. - 0002516: [Core: Tutorial Testing] Classroom Course 1 (pieper) - resolved. - 0002603: [Core: GUI] crash in qMRMLSceneModel::isANode after scene close (finetjul) - closed. - 0002610: [Core: Extensions] On MacOSX, extension are improperly fixed up and ends up. Size of package is huge (jcfr) - resolved. - 0002604: [Core: Command Line Modules (Modules/CLI)] Command line parameter are not saved into the scene (millerjv) - resolved. - 0002494: [Core: QtTesting] QtTesting-based ctests are failing - can they be fixed? (sankhesh) - resolved. - 0002497: [Core: Usability] color name not being set when editing in the Colors module (finetjul) - resolved. - 0002538: [Core: Base Code] slice pipeline causing a crash when restoring scene views with models + slices visible in 3d (finetjul) - resolved. - 0002540: [Core: GUI] avoid rendering during batch processing (finetjul) - closed. - 0002490: [Core: Building (CMake, Superbuild)] nightly test machine can't create temp dir (factory-mac-64bits.kitware) (jcfr) - resolved. - 0002470: [Module SceneViews] Slicer crashes when loading a scene that contains a set of scene views with tracts (pieper) - resolved. - 0002441: [Core: Scripting (Wrapping, Python)] Slicer/Base/Python/slicer/util.py loadScene function missing "from slicer import app"? (jcfr) - resolved. - 0002270: [Module VolumeRendering] build Slicer on windows 7 with a 4gb graphic card FIXED (finetjul) - resolved. - 0001380: [Core: Base Code] Update vtkMRMLDisplayableNode::PolyData API (finetjul) - resolved. - 0001841: [Core: Command Line Modules (Modules/CLI)] Multivolumes do not load after saving (fedorov) - resolved. - 0002242: [Core: Extensions] .s4ext information - External project root directory (jcfr) - resolved. - 0002201: [Core: Extensions] error displayed loading plastimatch module - Q_ASSERT should not be used (jcfr) - resolved. - 0002214: [Module MultiVolumeExporer] MultiVolume - Hide current frame copy (fedorov) - resolved. - 0002236: [Core: Command Line Modules (Modules/CLI)] Update SlicerExecutionModel to extend support for hidden attribute (millerjv) - resolved. - 0002215: [Module MultiVolumeExporer] MultiVolume - Label the axis of the interactive chart (fedorov) - resolved. - 0002217: [Core: Command Line Modules (Modules/CLI)] CLI <file> type presents an edit box without a file browser button - regression from slicer 3 (finetjul) - resolved. - 0002243: [Core: Extensions] Slicer extension creation using a project build using CMake option (jcfr) - resolved. - 0002248: [Core: Extensions] Generic Loadable module test failed to run when externally compiled (jcfr) - resolved. - 0002237: [Core: Building (CMake, Superbuild)] Update External_python so that C compiler is also used (blowekamp) - resolved. - 0002238: [Core: Building (CMake, Superbuild)] When including Slicer_USE_FILE in a project, an EXTENSION_NAME or MODULE_NAME have to be set (jcfr) - resolved. - 0002391: [Core: Extensions] Python code that is bundled with an extension is not accessible on Macs (jcfr) - resolved. - 0002390: [Core: Extensions] Slicer build directory is hard-coded (jcfr) - resolved. - 0002133: [Core: Extensions] crash installing extension (skull stripper) (jcfr) - resolved. - 0002175: [Core: Command Line Modules (Modules/CLI)] Some modules failed to install (jcfr) - resolved. - 0002407: [Core: Extensions] Extensions that depend upon extensions (jcfr) - resolved. - 0001999: [Core: Building (CMake, Superbuild)] Expose DCMTK_DIR to Slicer built-in module (jcfr) - resolved. - 0002319: [Core: Base Code] unable to run Slicer.exe as it crashes due to an unknown error (jcfr) - resolved. - 0002187: [Core: QtTesting] Do not used "activated" signal since it doesn't map to "clicked" in a cross platform fashion (finetjul) - resolved. - 0001145: [Core: Base Code] Add Test to make slicer starts (jcfr) - resolved. - 0002410: [Core: Base Code] "Add Data" cannot read DoubleArrayNode CSV files (finetjul) - resolved. - 0002023: [Core: Usability] ability to change the default for save destination in preferences (finetjul) - resolved. - 0002162: [Module Diffusion] Memory leak, when using the module Tractography Fiducial Seeding (jcfr) - resolved. - 0002179: [Core: Usability] Use keyboard to control 3D view (finetjul) - resolved. - 0002283: [Core: Building (CMake, Superbuild)] Enable selective disabling of scripted modules (crmullin) - resolved. - 0001866: [Core: Base Code] Saving Scene: path update issue (finetjul) - resolved. - 0002268: [Core: Scripting (Wrapping, Python)] loadVolume throws error in vtkMRMLVolumeArchetypeStorageNode.cxx (jcfr) - resolved. - 0002343: [Core: Base Code] Implement last test in qMRMLColorPickerWidgetTest2 (finetjul) - resolved. - 0002122: [Core: Base Code] Fix unused variable warnings related to ctkSettingsDialog (finetjul) - resolved. - 0001810: [Module Annotations] Nothing happens when changing X in Advanced Points tab in annotation edit dialog (nicole) - resolved. - 0002284: [Core: Building (CMake, Superbuild)] Enable selective disabling of CLI modules (crmullin) - resolved. - 0002282: [Core: Extensions] Update Carma extension (millerjv) - resolved. - 0002191: [Core: Extensions] How to get extension list after clicking on detail view ? (jcfr) - resolved. - 0002193: [Core: Scripting (Wrapping, Python)] Python NumPy crash (jcfr) - resolved. - 0002183: [Core: Documentation & Wiki] Create mediawiki template to link back with appropriate doxygen documentatation (jcfr) - resolved. - 0001825: [Core: GUI] Destination directories in 'Save Scene and Unsaved Data' are not actually updated in common use case (finetjul) - closed. - 0002504: [Core: Tutorial Testing] Tutorial 2 - MRI-based topographic parcellation of human brain (pohl) - closed. - 0002510: [Core: Tutorial Testing] Tutorial 8 - White matter exploration for neurosurgical planning (demian) - closed. - 0002508: [Core: Tutorial Testing] Tutorial 6 - Traumatic Brain Injury Case Analysis (alexy) - closed. - 0002431: [Core: Base Code] OpenIGTLinkIF leaks (tokuda) - closed. - 0002452: [Core: Usability] Add voxel cropping functionality in CropVolume (fedorov) - closed. - 0002458: [Core: Building (CMake, Superbuild)] Building without PythonQt - CMake error (sankhesh) - closed. - 0002530: [Core: GUI] Display is not updated when changing a transform (finetjul) - closed. - 0002430: [Core: GUI] Models jump around in the MRML tree view when visibility is changed (finetjul) - closed. - 0002163: [Core: GUI] models hierarchy is not workable (finetjul) - closed. - 0002433: [Core: GUI] the Model Hierarchy View window does not fit to the size of the expanded tree. (finetjul) - closed. - 0002618: [Module DICOM] Repeated insertion of items locks up DICOM DB (pieper) - closed. - 0002499: [Core: GUI] Crash after turning on slice intersections and moving sliders in the 2D viewers (alexy) - closed. - 0002629: [Core: Usability] Crosshair does not work (millerjv) - closed. - 0002652: [Core: Base Code] Launcher doesn't handle arguments added after --additional-module-paths (jcfr) - closed. - 0002575: [Core: GUI] endoscopy module stopped working (pieper) - closed. - 0002525: [Module EMSegment] EM segmenter full brain parcellation simple has stopped working. (pohl) - closed. - 0002674: [Core: Base Code] Slice View label map opacity not managed by SliceLinkLogic (millerjv) - closed. - 0002675: [Core: Base Code] Slice view foreground opacity is not managed by SliceLinkLogic (millerjv) - closed. - 0002566: [Core: Base Code] PNG writer fails (alexy) - closed. - 0002546: [Core: Base Code] Slicer tries to save removed nodes. (alexy) - closed. - 0002653: [Module Diffusion] display mode changes when tracts out of volume after display properties shown (alexy) - closed. - 0002665: [Module Annotations] cropping is on, and roi is visible upon opening the VR module (nicole) - closed. - 0001926: [Core: GUI] can not toggle interpolate on or off in slice viewer (millerjv) - closed. - 0002165: [Module VolumeRendering] Volume rendering labelmap (finetjul) - closed. - 0002527: [Module VolumeRendering] Volume renderer does not handle label map with custom lut properly (finetjul) - closed. - 0002630: [Core: GUI] broken rendering - only part of the render window updates (finetjul) - closed. - 0002690: [Core: Packaging] x64 Slicer installer has wrong default on Windows 7 (jcfr) - closed. - 0002569: [Core: Base Code] GetReferencedSubScene does not work (finetjul) - closed. - 0002509: [Core: Tutorial Testing] Tutorial 7 - Radiotherapy (pinter) - closed. - 0001977: [Module DICOM] DICOM retrieve gets all query results instead of just the selected ones (pieper) - closed. - 0002405: [Core: GUI] help browse tutorials still points to 3.6 tutorials (finetjul) - closed. - 0002570: [Module Diffusion] Newly created fiberbundles do not display in slice viewer, when tubes on slices is turned on (alexy) - closed. - 0001515: [Module EMSegment] Labelmap generated by EMSegmenter Fast cannot be edited (pieper) - closed. - 0002311: [Core: GUI] Panning a slice hard to control and doesn't propagate to link logic (millerjv) - closed. - 0002600: [Core: Scripting (Wrapping, Python)] out of bounds parameter in GetParameterDescription python interactor crashes Slicer (jcfr) - closed. - 0002649: [Core: Scripting (Wrapping, Python)] Allow distribute to be installed directly using Slicer executable (jcfr) - closed. - 0002660: [Core: Extensions] failure to load annotation libraries from some extensions (jcfr) - closed. - 0002662: [Core: Extensions] logic is not initialized properly in Reporting extension (jcfr) - closed. - 0002016: [Module DICOM] Multi-load appears not to work. (pieper) - closed. - 0002034: [Core: Extensions] Integrate Plastimatch extensions (gregsharp) - closed. - 0001574: [Module Diffusion] FB display: crash when selecting FB node loaded while module is open (alexy) - closed. - 0002378: [Module Editor] Grow cut crashes Slicer (millerjv) - closed. - 0002586: [Core: Extensions] SpatialObjectsViewer extension does not install on Mac OS X nightly package (crmullin) - closed. - 0002617: [Core: Extensions] spatial objects extension is not installing (crmullin) - closed. - 0002465: [Core: Building (CMake, Superbuild)] SlicerConfig - Ensure CMake search path specific to external project are added in order (sankhesh) - closed. - 0002592: [Core: Usability] Rename TractographyFiducialSeedingModule into TractographyInteractiveSeedingModule (sankhesh) - closed. - 0002651: [Core: Building (CMake, Superbuild)] Clean and review support for CLI written in Java (jcfr) - closed. - 0002625: [Module EMSegment] "Fix node already registered warning" (jcfr) - closed. - 0002668: [Core: Base Code] Fix "-Woverloaded-virtual" warning in vtkITKGrowCutSegmentationImageFilter (millerjv) - closed. - 0002321: [Core: Building (CMake, Superbuild)] Fix gcc 4.6.x link error related to libvtkPythonCore.so.5.10.0 - undefined reference to `Py*' (sankhesh) - closed. - 0001510: [Core: GUI] data module display is bad (finetjul) - closed. - 0002582: [Core: GUI] Unoptimized size for data module tree view (finetjul) - resolved. - 0002601: [Core: GUI] W/L of FA volume is not handeld properly. UI in the volume module is not usable. (finetjul) - closed. - 0002581: [Core: MRML] hiding closest anatomy letter in 3D view stops working after VR and scene close (finetjul) - closed. - 0002666: [Module Annotations] Extra "red line" added when placing ruler or roi (nicole) - closed. - 0002472: [Module VolumeRendering] volume rendering stoped updating spontaneously (finetjul) - closed. - 0002496: [Module Annotations] Ruler is not usable in CompareViews (nicole) - closed. - 0002636: [Core: Scripting (Wrapping, Python)] package pyconfig.h with Slicer to enable pip installation (jcfr) - closed. - 0002351: [Core: Extensions] Scripted modules appear in an inconsistent directory location when building multiple modules in a single extension (jcfr) - closed. - 0002641: [Core: Base Code] Slicer crashes when trying to load scripted module from root directory (jcfr) - closed. - 0002532: [Core: Tutorial Testing] old testing settings can impact new test results (sankhesh) - closed. - 0002367: [Core: Building (CMake, Superbuild)] Fix ubuntu factory error "Xlib: extension "GLX" missing on display ":0.0" (jcfr) - closed. - 0002387: [Core: MRML] Loading Tutorial data produces improper sceene (pieper) - closed. - 0002534: [Core: GUI] panning of slice views does is not linked when zoom and slice scroll are linked (millerjv) - closed. - 0001650: [Core: Base Code] Model intersection doesn't show up on slice when adding the model in a module (inorton) - closed. - 0002626: [Core: Base Code] Uniformize Get/New/Create/CreateAndAdd (finetjul) - closed. - 0002366: [Core: Base Code] Saving scene in a bundle file generates invalid mrb file on Windows (finetjul) - closed. - 0002484: [Core: MRML] Grid transform cannot be saved (alexy) - closed. - 0002102: [Core: GUI] Centered volume loading option puts the volume corner into the center (pieper) - closed. - 0002492: [Core: Building (CMake, Superbuild)] Continuous build configuration error on factory.kitwarein.com for Perknav (jcfr) - closed. - 0002463: [Core: Usability] Reformat module doesn't enforce entered value (finetjul) - closed. - 0002158: [Core: Extensions] Rename variable referring to slicer extension as "sext" (jcfr) - closed. - 0002553: [Core: QtTesting] Need QtTesting.dll (jcfr) - closed. - 0001816: [Core: Usability] Order of items added in Add Data is reversed (finetjul) - closed. - 0002358: [Core: Extensions] Python wrapping in extensions fails on Mac (crmullin) - closed. - 0002568: [Core: Extensions] Add ExperimentalUploadOnly target (jcfr) - closed. - 0002251: [Core: Extensions] slicer.modules is not initialized when queried from extension (jcfr) - closed. - 0002542: [Core: Scripting (Wrapping, Python)] Python error are not reported when widget generic cxx test is associated with ScriptedWidget (jcfr) - closed. - 0001744: [Module SceneViews] sceneview with volume rendering does not survive roundtrip (finetjul) - closed. - 0001887: [Core: MRML] sceneview roundtrip problem with LUT and with VR (finetjul) - closed. - 0002531: [Module VolumeRendering] sceneview with VR does not survive roundtrip (finetjul) - closed. - 0002057: [Core: MRML] Crash when closing scene (alexy) - closed. - 0002428: [Module ModelMaker] Model maker creates less models than the number of labels in the input image (finetjul) - closed. - 0002120: [Core: Base Code] MRB does not survive roundtrip (pieper) - closed. - 0002135: [Module VolumeRendering] volume rendering label map does not work properly (finetjul) - closed. - 0002141: [Core: Base Code] Color module damages LUT (finetjul) - closed. - 0002298: [Core: Extensions] skull stripper extension does not install (crmullin) - closed. - 0002386: [Core: Documentation & Wiki] LUT documentation needs to be equipped with proper scripts to reflect versions (jcfr) - closed. - 0002462: [Core: Usability] Reformat widget doesn't resize to whole volume (finetjul) - closed. - 0002476: [Core: GUI] Loading Data with Long Filename Forces Slice Views to Resize Very Small (sankhesh) - closed. - 0001455: [Core: Command Line Modules (Modules/CLI)] Launching CLI modules from command line (jcfr) - closed. - 0001979: [Core: GUI] Red viewer show garbage on initial display (alexy) - closed. - 0002040: [Module DICOM] Failure to import anonymized studies with empty patient ID (pieper) - closed. - 0002409: [Core: Base Code] Crash when deselecting labelmap option for an active labelmap volume (pieper) - closed. - 0002373: [Core: Extensions] SkullStripper is available in the Extensions Manager but can NOT be installed (jcfr) - closed. - 0002460: [Core: GUI] crash when entering Volumes Module with image that has NaN's (mccormic) - closed. - 0001889: [Module Annotations] Annotations list order not passed to CLI (nicole) - closed. - 0002222: [Core: Extensions] Dependant extensions get the _DIR variable from the ones it depends on (jcfr) - closed. - 0002414: [Core: Command Line Modules (Modules/CLI)] Vector to Scalar Volume (pieper) - closed. - 0001192: [Core: MRML] ModelMRMLDisplayableManager doesn't handle vtkMRMLDisplayNode::ViewNodes (alexy) - closed. - 0002224: [Core: Extensions] Status metadata are not documented as optional but are required when configuring (jcfr) - closed. - 0001463: [Core: GUI] Slice annotations resize on long volume name (pieper) - closed. - 0002246: [Core: Extensions] The XML tag 'file' behaves as a string (jcfr) - closed. - 0002253: [Core: Building (CMake, Superbuild)] Build error with Tcl disabled (jcfr) - closed. - 0001933: [Module DICOM] Imported dataset does not show up in list (pieper) - closed. - 0002258: [Core: GUI] Add button in Data module / Node inspector overwrites attribute if its name is selected (pinter) - closed. - 0002233: [Core: Extensions] ModuleWizard fails to copy md5 files (jcfr) - closed. - 0002232: [Core: Building (CMake, Superbuild)] Use SEMMacroBuildCLI in Slicer (jcfr) - closed. - 0002239: [Core: Extensions] Metadata associated with extension could all be optional (jcfr) - closed. - 0002166: [Core: Extensions] Building extension using Experimental targets fail (jcfr) - closed. - 0002235: [Core: Scripting (Wrapping, Python)] Add a convenient mechanism to reload scripted module without having to restart Slicer (pieper) - closed. - 0002227: [Core: Extensions] ExperimentalUpload build should display author warning only when required (jcfr) - closed. - 0002234: [Core: Extensions] Building extensions using Experimental or ExperimentalUpload target failed to upload on CDash (jcfr) - closed. - 0002225: [Core: Usability] Crash while loading a scene with an RGB volume (finetjul) - closed. - 0002228: [Core: Extensions] Simplify Extensions template to minimize confusion (jcfr) - closed. - 0002432: [Module Editor] add custom cursor overrides for editor tool effects (pieper) - closed. - 0001772: [Core: Usability] Key modifier + volume selector in 2D Slice viewers (fedorov) - closed. - 0001600: [Core: Usability] "Selected" feature in Models (nicole) - closed. - 0002422: [Core: Base Code] bug in mgz file reader (pieper) - closed. - 0002415: [Core: Documentation & Wiki] Vector to Scalar Volume is missing wiki documentation (pieper) - closed. - 0001965: [Core: Documentation & Wiki] Release Mediawiki documentation using "Nightly" namespace (jcfr) - resolved. - 0002418: [Module DICOM] Provide access to the DICOM module logic/widget instance (pieper) - closed. - 0001807: [Module VolumeRendering] Trying to render a volume with double type crashes Slicer (finetjul) - closed. - 0002420: [Core: Usability] Conflict between Annotation placement and Editor effect (pieper) - closed. - 0002049: [Core: Documentation & Wiki] No Nightly documentation (jcfr) - closed. - 0002359: [Module VolumeRendering] assert in volume rendering settings on fresh windows build (finetjul) - closed. - 0001710: [Core: Scripting (Wrapping, Python)] Scripted Module Loading - An error occuring in one module prevent other module from loading (jcfr) - closed. - 0001759: [Core: MRML] Crash when "Clipping" tissue model (nicole) - closed. - 0002074: [Module DICOM] Crash when loading DICOM CT dataset (pieper) - closed. - 0002406: [Module DICOM] DICOM module not usable first time Slicer is run on fresh Slicer install (pieper) - closed. - 0002216: PkModeling - Show only needed property (millerjv) - closed. - 0001963: [Core: Base Code] Add unit test to vtkArchive zip/unzip methods (jcfr) - closed. - 0002202: [Module Diffusion] Add support to load and save NifTi Diffusion Tensor Files files (demian) - closed. - 0001894: [Module EMSegment] EM Segmenter labelmap opacity (pohl) - closed. - 0002150: [Core: Base Code] paning in slice views causes jumps (alexy) - closed. - 0001853: [Module Editor] Increate the limit for the paint tool, to be space aware. (pieper) - closed. - 0002259: [Core: GUI] slice pan should take into account zoom (alexy) - closed. - 0001874: [Module EMSegment] Em segmentation does not start after pressing the button EM Segment (pohl) - closed. - 0001804: [Module EMSegment] All anatomy color not available (pohl) - closed. - 0002320: [Module EMSegment] Adding another input channel results in strange gui behviour (pohl) - closed. - 0001667: [Module Editor] Editor lock up for brush tool (pieper) - closed. - 0002325: [Module DICOM] Import is always one series behind (pieper) - closed. - 0001622: [Module EMSegment] Remove all intermediate data (pohl) - closed. - 0002312: [Core: Usability] 3d view of slice texture should be smoothly interpolated (alexy) - closed. - 0002106: [Module SceneViews] Moving past the last image in the red windows with a CT dataset causes a crash (pieper) - closed. - 0001747: [Core: Building (CMake, Superbuild)] windows build/run issues as of svn 19350 (pieper) - closed. - 0001761: [Core: MRML] save scene to directory deletes one level too much (nicole) - closed. - 0002286: [Module Editor] editor is stuck with a color (pieper) - closed. - 0001788: [Module Editor] Editor module - Change Label (pieper) - closed. - 0001801: [Module Editor] The names of the labels in the color map become unavailable (pieper) - closed. - 0002294: [Core: GUI] Scene View does not save Volume lookup tables upon recall of Scene View (alexy) - closed. - 0002100: [Core: Base Code] merge and build in the editor does not work in mac nightly 5-20. It is still working in 5-19 (finetjul) - closed. - 0002245: [Core: Command Line Modules (Modules/CLI)] DWI to Full Brain Tractography does not respond (demian) - closed. - 0001993: [Module SceneViews] Restoring scene view should not use internal scene view node (alexy) - closed. - 0001980: [Core: GUI] Transforms module Identity button introduces additional rotation (finetjul) - closed. - 0002261: [Core: Usability] Mouse W/L control is not usable (inorton) - closed. - 0002306: [Core: GUI] panning in slice view - cursor does not 'stick' to image (alexy) - closed. - 0002262: [Core: Base Code] Fix memory leaks associated with ModelDisplayableManager refactor (jcfr) - closed. - 0001962: [Core: Base Code] vtkArchive - Improve "extract_tar" test (finetjul) - closed. - 0001952: [Core: GUI] camera position after loading scene (finetjul) - closed. - 0001895: [Module Editor] py_nomainwindow_qSlicerEditorModuleGenericTest output output error messages (pieper) - closed. - 0002220: [Core: Building (CMake, Superbuild)] Module wizard for loadable modules - problem with Testing/Cxx/CMakeLists.txt (jcfr) - closed. - 0002219: [Core: Chart] Define range for the plots (millerjv) - closed. - 0002097: [Core: Base Code] Move code for SceneDatabase export into a registered qSlicerFileWriter (finetjul) - closed. - 0002073: [Core: Base Code] can not get compare views (finetjul) - closed. - 0002038: [Core: GUI] Ignore orientation flag has no effect when loading volumes (finetjul) - closed. - 0002012: [Core: Building (CMake, Superbuild)] Fix Slicer build with EXTENSION_MANAGER_SUPPORT turned OFF (pieper) - closed. - 0002181: [Core: Extensions] When internet is slow, Slicer freezes at startup (jcfr) - closed. - 0002010: [Core: GUI] Save prompts to Save Scene file even when Scene file is not selected (unchecked) (finetjul) - closed. - 0001995: [Module SceneViews] Scene view references (alexy) - closed. - 0002198: [Core: Scripting (Wrapping, Python)] qMRMLModelDisplayNodeWidget seems not available from python (jcfr) - closed. - 0002277: [Core: Usability] Save data unexpected behavior (finetjul) - closed. - 0001882: [Core: Documentation & Wiki] Create a Qt version variable on Wiki compatible with Qt online doc (jcfr) - closed. - 0000986: [Core: GUI] Expose option for saving uncompressed (finetjul) - closed. - 0002338: [Core: Extensions] Check why Windows 64bits extension continuous is not triggered (jcfr) - closed. - 0001740: [Core: GUI] Cosmetics and update for the file menu (finetjul) - closed. - 0001687: [Core: Base Code] Merge Tractography module with Tractography display module (joe_snyder) - closed. - 0001204: [Core: Packaging] Centralize revision/version/name of Slicer (jcfr) - closed. - 0001167: [Core: Building (CMake, Superbuild)] Fix warning related to SlicerFunctionGenerateExtensionDescription (jcfr) - closed. - 0002377: [Core: Packaging] no pyexpat on windows (jcfr) - closed. - 0002389: [Module DICOM] Speed up DICOMScalarVolumePlugin load() by using the archetype node directly (fedorov) - closed. - 0002329: [Module Editor] Widget is not instantiated properly when showVolumesFrame=False (pieper) - closed. - 0001779: [Core: Base Code] Slicer Scene restore crash (finetjul) - closed. - 0001817: [Core: Usability] default write format on data save (finetjul) - closed. - 0001863: [Core: Building (CMake, Superbuild)] To avoid _RegisterApplication / _CGSDefaultConnection error, create a template of launchd file for dashboard (jcfr) - closed. - 0001855: [Core: Building (CMake, Superbuild)] Link errors during CTK build (jcfr) - closed. - 0001854: [Core: Chart] Line styles (patterns) for the plots (millerjv) - closed. - 0002299: [Module Editor] Editor module is missing (pieper) - closed. - 0001850: [Core: Building (CMake, Superbuild)] Found PythonLibs: ... get_filename_component unknown component optimized (jcfr) - closed. - 0001846: [Core: Command Line Modules (Modules/CLI)] Loadable module title is always the directory name (jcfr) - closed. - 0001677: [Core: Base Code] SVN download of loadable extension modules does not work (jcfr) - closed. - 0002265: [Module VolumeRendering] default render engine is cpu ray casting (finetjul) - closed. - 0002184: [Module Editor] Crash - Identify and Remove Islands effect (pieper) - closed. - 0001922: [Core: Scripting (Wrapping, Python)] add a self-testing module (pieper) - closed. - 0002408: [Core: Usability] Voxel value in scientific mode (pieper) - closed. - 0002249: [Core: Scripting (Wrapping, Python)] numpy.linalg.det does not work (jcfr) - closed. - 0002269: [Core: Extensions] many extensions are missing (millerjv) - closed. - 0002281: [Core: Extensions] FacetedVisualizer extension is not available on unix-like platform (millerjv) - closed. - 0002278: [Core: Extensions] skull stripper extension is not available (jcfr) - closed. - 0001594: [Core: Usability] specifying scene or data to load on the command line (crmullin) - closed. - 0001593: [Module Annotations] Untoggle "Place a fiducial" on click (nicole) - closed. - 0002082: [Core: Usability] ModifiedSinceRead to confirm exit/load (finetjul) - closed. - 0002093: [Core: Base Code] Fix qSlicerTractographyFiducialSeedingModuleWidgetGenericTest (alexy) - closed. - 0002185: [Core: Extensions] Update infrastructure so that new Volume Rendering technique can be added as extension (finetjul) - closed. - 0002194: [Core: QtTesting] Configure ApplicationsSlicerAppData.py into build tree (BenjaminLong) - closed. - 0002180: [Core: GUI] Remove "home" module from toolbar (crmullin) - closed. - 0002279: [Core: Extensions] can't deveop extension on windows (jcfr) - closed. - 0002280: [Core: Building (CMake, Superbuild)] Numpy - Do not expect developer to uninstall g77 (jcfr) - closed. - 0002276: [Core: Building (CMake, Superbuild)] Fix numpy build error where gfortran is installed (jcfr) - closed. - 0002271: [Core: Building (CMake, Superbuild)] Add build option allowing to disable DICOM support (jcfr) - closed. - 0002129: [Core: Building (CMake, Superbuild)] Build VTK with VTK_LEGACY_REMOVE ON (jcfr) - closed. - 0001946: [Core: Extensions] remember login for extension catalog (jcfr) - closed. - 0001974: [Core: Building (CMake, Superbuild)] Package name / Slicer_BUILDDATE should be associated with last commit date instead of the current date of the day. (jcfr) - closed. - 0002064: [Core: MRML] Build error associated to qMRMLNodeAttributeTableViewTest (jcfr) - closed. - 0002174: [Core: Building (CMake, Superbuild)] Can not finish Building, file missing. (jcfr) - closed. - 0002167: [Core: Building (CMake, Superbuild)] Unnecessary python wrapping on Visual Studio (jcfr) - closed. - 0002353: [Core: Building (CMake, Superbuild)] ExternalData not found (jcfr) - closed. - 0002368: [Core: Building (CMake, Superbuild)] Checkout DashboardScripts CVS (crmullin) - closed. - 0002131: [Core: Base Code] Address unused warning introduced by commit r20147 - Added projections of the eigenvector corresponding to the maximal eigenvalu (demian) - closed. - 0002347: [Core: Extensions] Extension Experimental build tests all fail on Windows in Release mode (jcfr) - closed. - 0002350: [Core: Extensions] Extension generic test selector fails on Windows (jcfr) - closed. - 0002342: [Core: Base Code] Check state of warning about "spacing" in vtkImageAccumulateDiscreteExecute.cxx (nicole) - closed. - 0002317: [Core: Building (CMake, Superbuild)] Update dashboard driver script to specify shorter binary dir (jcfr) - closed. - 0002303: [Core: Documentation & Wiki] Slicer doxygen doc is out of date (jcfr) - closed. - 0002314: [Core: GUI] Clicking on any module widget in the toobar should open the Module Panel. (jcfr) - closed. - 0002293: [Core: Building (CMake, Superbuild)] Enable external extension to be built with the Slicer proper (jcfr) - closed. - 0002305: [Core: Base Code] Associate icon within python interactor and set window title (jcfr) - closed. - 0002098: [Core: Usability] Redesign Save Data Dialog (finetjul) - closed. - 0002255: [Core: Building (CMake, Superbuild)] Integrate GIT_REPO option into dashboard script (crmullin) - closed. - 0002024: [Core: Building (CMake, Superbuild)] Build error when using wrong version of Qt (jcfr) - closed. - 0002159: [Core: QtTesting] Rename tutorial test and associated python file (BenjaminLong) - closed. - 0001387: [Core: Base Code] slicer reports a crash on exit (nicole) - closed. - 0001870: [Core: GUI] cosmetics for the settings panel (finetjul) - closed. - 0002065: [Core: MRML] Use the concept of "_data" in qMRMLNodeAttributeTableViewTest (pinter) - closed. - 0001733: [Core: QtTesting] Generalize qSlicerIOManager::openDialog code (BenjaminLong) - closed. - 0001829: [Core: GUI] Add option to customize font size(and family ?) for the python console (crmullin) - closed. - 0002066: [Core: MRML] Fix warnings related to vtkMRMLVolumeRenderingMultiVolumeTest (finetjul) - closed. - 0002070: [Core: MRML] Update qMRMLNodeAttributeTableView to use QString only (pinter) - closed. - 0002063: [Core: MRML] Fix warning associated with qMRMLNodeAttributeTableView (pinter) - closed. - 0001997: Fix instruction and link related to Mac download binaries (pieper) - closed. - 0001973: [Core: Building (CMake, Superbuild)] SlicerFunctionToday does NOt handle foreign operating system / UTF-8 character (jcfr) - closed. - 0002001: [Core: Base Code] Commit r20033 and r20034 cause approx. 40 more test to fail (finetjul) - closed. - 0001516: [Module EMSegment] ctkVTKErrorLogMessageHandler crashes (jcfr) - closed. - 0001791: [Core: MRML] Slicer crashes when changing window size (finetjul) - closed. - 0001955: [Core: Base Code] EMSegmenter shows up red in Modules Setting but works fine (jcfr) - closed. - 0001315: [Core: Base Code] Slicer4 does not start on SPL machines (nicole) - closed. - 0001986: [Core: Extensions] Mechanism allowing to trigger continuous build of extension after Slicer build is finished (jcfr) - closed. - 0001988: [Core: Extensions] Fix build issue associated with SkullStripper extension (jcfr) - closed. - 0001919: [Module Editor] Disable Editor tests if Tcl is disabled (jcfr) - closed. - 0001970: [Core: MRML] Warning associated with vtkMRMLDisplayableNode (finetjul) - closed. - 0001971: [Core: MRML] Closing MRML scene two times in a row leads to a crash (finetjul) - closed. - 0001902: [Core: Building (CMake, Superbuild)] Slicer_SKIP_PROJECT_COMMAND not considered next to Slicer_SKIP_USE_FILE_INCLUDE_CHECK (jcfr) - closed. - 0001901: [Core: Building (CMake, Superbuild)] slicer_setting_variable_message causes problems with EXTENSION_LICENSE_SHORT_DESCRIPTION (jcfr) - closed. - 0001941: [Core: Extensions] Extensions download from SVN repository fails (jcfr) - closed.Slicer4 - Slicer 4.1.1 ====================== - 0001987: [Core: Extensions] Add test to SkullStripper extension (millerjv) - resolved. - 0002200: [Core: QtTesting] QtTesting - Slides for summer project week 2012 (BenjaminLong) - closed. - 0001856: [Module SceneViews] sceneview does not survive a roundtrip (nicole) - closed. - 0002140: [Core: Extensions] settings error when using extension manager (jcfr) - closed. - 0001950: [Core: Extensions] Extension manager does not honor proxy settings for communicating through a firewall (jcfr) - closed. - 0001774: [Core: Usability] Slicer won't update slice view (millerjv) - closed. - 0001921: [Core: GUI] Attribute list in MRML Node Inspector in Data module (finetjul) - closed. - 0002091: [Core: Documentation & Wiki] Document Drag&Drop functionality (Michael Jeulin-L) - closed. - 0002119: [Core: Building (CMake, Superbuild)] Support recent version of XCode (pieper) - closed. - 0001989: [Core: Extensions] Update Extension documentation on wiki (jcfr) - closed. - 0001944: [Core: Extensions] unpacking extension into read-only directory hangs (jcfr) - closed. - 0001906: [Core: Extensions] Failed to uninstall extension "in use" (jcfr) - closed. - 0002107: [Core: Extensions] Enabling/Disabling extension does NOT work (jcfr) - closed. - 0002088: [Core: Extensions] Indicate the user when extensions is incompatible (jcfr) - closed. - 0002130: [Core: Extensions] SkullStripper extension is NOT loaded properly (jcfr) - closed. - 0002043: [Core: Building (CMake, Superbuild)] Install CMake 2.8.8 on the factory and update scripts (jcfr) - closed. - 0002127: [Core: Building (CMake, Superbuild)] Slicer 4.1.1 - Test and release (jcfr) - closed. - 0001990: [Core: Extensions] Create 4.1.1 version of Slicer with backported extensions build system (jcfr) - closed. - 0002128: [Core: Building (CMake, Superbuild)] Slicer 4.1.1 - Setup dashboard script allowing to build extension (jcfr) - closed. - 0002126: [Core: Building (CMake, Superbuild)] Slicer 4.1.1 - Identify and backport fixes related to extensions buildsystem (jcfr) - closed. - 0002155: [Core: Extensions] Ensure extension can be build and uploaded outside of Slicer using a custom value for Slicer_EXTENSION_DESCRIPTION_DIR (jcfr) - closed. - 0002152: [Core: Extensions] Add support for svnusername/svnpassword (jcfr) - closed. - 0002148: [Core: Extensions] Consider extension support libraries installed in either lib/Slicer-X.Y or bin (jcfr) - closed. - 0002147: [Core: Building (CMake, Superbuild)] UseSlicer requires GIT_EXECUTABLE (jcfr) - closed. - 0002144: [Core: Extensions] Fail to install extension if Launcher settings is read-only (jcfr) - closed. - 0002139: [Core: Extensions] Ensure CLIExtensionTemplate download all associated testing data (jcfr) - closed. - 0001945: [Core: Extensions] tooltips on the extension manager widgets (jcfr) - closed. - 0002132: [Core: Extensions] Configure extension project with Midas credential when Slicer_UPLOAD_EXTENSIONS is OFF (jcfr) - closed. - 0002044: [Core: Extensions] Skullstripper is not well behaved and dumps intermediate results where ever (millerjv) - closed. - 0001940: [Core: Packaging] No version in mac bundle (jcfr) - closed. - 0002137: [Core: Building (CMake, Superbuild)] can't import Tkinter on win64 build (jcfr) - closed. - 0001905: [Core: Extensions] Download progress in Extension Manager (jcfr) - closed. - 0001782: [Core: GUI] Slicer display of images is not using entire screen area (millerjv) - closed. - 0001459: [Core: GUI] Scene save directory selector location (finetjul) - closed. - 0002075: [Core: Building (CMake, Superbuild)] Slicer factory - On Ubuntu 8.04 VM, X server is crashing causing build and test to fail. (jcfr) - closed. - 0002068: [Core: Documentation & Wiki] Update wiki adding information specific to GDB / Attach process (crmullin) - closed. - 0002054: [Core: Extensions] Fail to build extension in a standalone fashion (jcfr) - closed. - 0002041: [Core: Extensions] Extensions build continuously are uploaded to CDash instead of Midas (jcfr) - closed. - 0002026: [Core: Extensions] Review "DoseVolumeHistogram" and "DoseAccumulation" extension (jcfr) - closed. - 0002021: [Core: Extensions] Carma extension does NOT build in either the continuous or nightly (jcfr) - closed. - 0002036: [Core: Extensions] Ensure SlicerBlockBuildPackageAndUploadExtension find git/svn when installed in not standard location (jcfr) - closed.Slicer4 - Slicer 4.1.0 ====================== - 0001232: [Core: Scripting (Wrapping, Python)] Allow python modules to expose public functions (jcfr) - resolved. - 0002330: [Module ModelMaker] When there is a model in /tmp Model Maker produces that model as output of any execution (nicole) - resolved. - 0002385: [Module SceneViews] Issue with saving mrb scenes (nicole) - resolved. - 0002379: [Module SceneViews] Issue with Close Scene and Scene Views (nicole) - resolved. - 0002435: [Module EMSegment] Missing labels in color file used for EM Segmenter (nicole) - resolved. - 0001951: [Core: Command Line Modules (Modules/CLI)] Resample Scalar/Vector/DWI module does not accept DWI input (nicole) - resolved. - 0001811: [Module Annotations] Locked annotation doesn't apply to everything (nicole) - resolved. - 0001796: [Module Annotations] inconsistent fiducial glyph (nicole) - resolved. - 0001681: [Core: GUI] Slicer with different fonts (finetjul) - resolved. - 0001780: [Core: Base Code] Issue with labelmap viewer (millerjv) - resolved. - 0001633: [Core: Usability] Crash on close scene after deleting ROI (finetjul) - resolved. - 0002061: [Core: QtTesting] Extension Manager issue in SlicerQTtesting (finetjul) - resolved. - 0001813: [Core: Scripting (Wrapping, Python)] loadVolume() function in Python not communicating to Qt (finetjul) - resolved. - 0002375: [Module Annotations] Ruler intersection is in the wrong place (nicole) - resolved. - 0002050: [Module EMSegment] EMSegment should *delete* temporary files after usage (pohl) - resolved. - 0001840: [Core: Base Code] new color label for 4.1 release (nicole) - resolved. - 0001685: [Module Diffusion] Fiducial Seeding with several fiducials (alexy) - resolved. - 0001725: [Core: Command Line Modules (Modules/CLI)] Diffusion Scalar Measurements: update issue (finetjul) - resolved. - 0001724: [Module Diffusion] Diffusion Scalar Measurements: Planar measure issue (demian) - resolved. - 0001679: [Module Diffusion] Color By Orientation Issue (demian) - resolved. - 0001684: [Module Diffusion] Streamline tractography parameters default values (alexy) - resolved. - 0001678: [Module Diffusion] Glyph display inconsitencies between 2D and 3D viewer (alexy) - resolved. - 0002266: [Module Annotations] need to change properties for fiducial list (nicole) - closed. - 0001090: [Module Annotations] AnnotationFiducial: set common properties for group of fiducials (nicole) - closed. - 0001184: [Module Annotations] Annotation: improve drag-drop to hierarchy usability (nicole) - closed. - 0001091: [Module Annotations] AnnotationFiducial: performance issues (nicole) - closed. - 0001754: [Core: GUI] Show Option does not work 2nd time the add data dialog is opened (finetjul) - closed. - 0002108: [Core: GUI] Crash when deleting a model after deleting its parent hierarchy node (nicole) - closed. - 0001243: [Core: Base Code] hierarchy display in slicer 4 is not the same as in slicer 3 mac 7-1 2011 (nicole) - closed. - 0001249: [Core: GUI] parents in the model hierarchy do not have colors and can not be used to turn all their children on and off. (nicole) - closed. - 0001653: [Core: Usability] GUI for Reformat widget (finetjul) - closed. - 0002030: [Module SceneViews] switching between sceneviews results in strange display in the slice viewer (nicole) - closed. - 0001769: [Core: Base Code] Crash when trying to read a .vtk file. (finetjul) - closed. - 0001790: [Core: GUI] Inconsistency of show volume icon within volume rendering module (finetjul) - closed. - 0001217: [Core: MRML] Create qMRMLCore (BenjaminLong) - closed. - 0001753: [Core: Usability] Slice spacing is not updated if already in lightbox mode (finetjul) - closed. - 0001720: Link allowing to list extension associated with a package doesn't work. (jcfr) - closed. - 0001757: [Module Editor] Radius in Editor module is restored automatically to 5mm (pieper) - closed. - 0001745: [Core: GUI] listing of toolbars is inconsistent (finetjul) - closed. - 0001758: [Core: MRML] Loading Model hierarchy scene while having the Model module open result in bad hierarchy (nicole) - closed. - 0001762: [Core: Base Code] Out of memory issues on 32-bit systems (finetjul) - closed. - 0001818: [Core: Usability] DICOM volumes marked modified on save (pieper) - closed. - 0001812: [Core: Documentation & Wiki] Annotations documentation is missing (nicole) - closed. - 0001808: [Core: Building (CMake, Superbuild)] VTK Does not compile (jcfr) - closed. - 0001806: [Core: Scripting (Wrapping, Python)] Memory management in Python is confusing (jcfr) - closed. - 0001803: [Core: Base Code] Slicer crashes when manipulating a transform hierarchy (finetjul) - closed. - 0001802: [Core: Base Code] Transform module does not have a way to invert a transform (finetjul) - closed. - 0001787: [Core: GUI] exit() function does not fire when closing Slicer within a Loadable Module (finetjul) - closed. - 0001786: [Module Diffusion] DWI2FBT fails at DWI to tensors step (finetjul) - closed. - 0001784: [Core: GUI] Improved deafault name for a scene at initial save (finetjul) - closed. - 0001776: [Core: Usability] Otsu segmentation labelmap not turned on by default (finetjul) - closed. - 0001773: [Core: Base Code] special character in file name confuses slicer (finetjul) - closed. - 0001833: [Module VolumeRendering] the vtk gpu raycaster render engine stopped working since the move to vtk 5.10 (finetjul) - closed. - 0001654: [Module Diffusion] Error in DWI to full brain tractography (demian) - closed. - 0001665: [Module Diffusion] ColorBy buttons allow multiple selection (demian) - closed. - 0001664: [Core: Packaging] Installation failure of Slicer 4.0.1 on Mac OS 10.5.8 (jcfr) - closed. - 0001691: [Core: Building (CMake, Superbuild)] Integrate Swig to Windows superbuild (jcfr) - closed. - 0001661: [Core: Command Line Modules (Modules/CLI)] Support customization of which modules should be loaded (finetjul) - closed. - 0001651: [Core: Command Line Modules (Modules/CLI)] Pressing cancel never resets (finetjul) - closed. - 0001649: [Core: GUI] Long volume name in data info view causes resize of module pane (finetjul) - closed. - 0001625: [Core: Packaging] libqMRMLWidgets.so not in the correct place (jcfr) - closed. - 0001444: [Core: GUI] Deleting model in Models module: leaves behind hierarchy node (alexy) - closed. - 0001612: [Module VolumeRendering] initial transfer function looks weird (finetjul) - closed. - 0001611: [Module VolumeRendering] Click on "Display ROI" should enable the cropping (finetjul) - closed. - 0001597: [Core: Usability] Editor split volume feature (pieper) - closed. - 0001595: [Core: Base Code] Enable/Disable which module should be loaded at next startup (jcfr) - closed. - 0001144: [Core: GUI] Warning during startup with a gui-less module without logic class (jcfr) - closed. - 0001721: [Module VolumeRendering] shift slider is vertical instead of horizontal (finetjul) - closed. - 0001709: Slicer/Midas - http://slicer.kitware.com/midas3/slicerpackages [^] should works (jcfr) - closed. - 0001656: [Core: Scripting (Wrapping, Python)] crash in scene clear coming from displayable manager destructor (jcfr) - closed. - 0001680: [Core: GUI] Data load dialog usability (joe_snyder) - closed. - 0001711: [Core: Building (CMake, Superbuild)] Extension build - Parameter including "/" are not properly passed as ctest argument (jcfr) - closed. - 0001379: [Core: GUI] swapping volume to be rendered causes the settings to be reset, swapping volume property node leads to crash (finetjul) - closed. - 0002094: [Core: Base Code] Move 3DSlicer icon into appropriate subdirectories (Michael Jeulin-L) - closed. - 0001189: [Core: MRML] problem in creating a new label map (pieper) - closed. - 0001186: [Core: MRML] Slice intersections visible is not working (inorton) - closed. - 0001663: [Module VolumeRendering] assert crash while adjusting transfer function (finetjul) - closed. - 0001485: [Core: GUI] changing volume to label map causes a crash (finetjul) - closed. - 0001488: [Core: GUI] sceneviews do not reconfigure the new compare view grids (millerjv) - closed. - 0001495: [Module SceneViews] restoring sceneview called compare view crashes slicer after producing a bad display (millerjv) - closed. - 0001526: [Module SceneViews] Sceneviews do not restore slice contents correctly when slices are linked (millerjv) - closed. - 0001307: [Core: GUI] transfer function is not visible (finetjul) - closed. - 0001923: [Core: Documentation & Wiki] {{documentation/{{documentation/version}}/module-category}} doesn't support extra newline spacing in XML (jcfr) - closed. - 0001799: [Module Annotations] Crash when slicer quits (finetjul) - closed. - 0001675: [Core: Documentation & Wiki] Link to 4.0 wiki page of some modules are broken (joe_snyder) - closed. - 0001624: [Core: Scripting (Wrapping, Python)] Memory leaks are not taken as failure for python module tests (jcfr) - closed. - 0001589: [Core: MRML] Switch to Red slice only looses reformat (millerjv) - closed. - 0001474: [Core: MRML] restoring sceneview crashes slicer (nicole) - closed. - 0001527: [Core: GUI] Multiline tooltips formatting (dpace) - closed. - 0001793: [Module Diffusion] Crash when entering annotations module from tractography fiducial seeding (finetjul) - closed. - 0001751: [Core: GUI] Toggle Foreground/Background/Labelmap opacity with mouse gesture (finetjul) - closed. - 0001750: [Core: GUI] Slice View controller cosmetics (finetjul) - closed. - 0001719: [Core: GUI] tick marks are wrong (finetjul) - closed. - 0001731: [Module VolumeRendering] going to the volume renderer crashes slicer (finetjul) - closed. - 0001641: [Module VolumeRendering] Crash trying to change transfer function (finetjul) - closed. - 0001598: [Core: Usability] Add volume resets slice orientation (millerjv) - closed. - 0001712: [Module Annotations] Can't drag/drop elements to new hierarchy in a long annotation list (nicole) - closed. - 0001713: [Module Annotations] Delete annotation hierarchy from w/in Annotation module (nicole) - closed. - 0001715: [Module Annotations] Fiducial import should go to named list (nicole) - closed. - 0001674: Add template for extracting last "released" version of Slicer (jcfr) - closed. - 0001521: Remove BreadCrumbs2 - Install BrettCrumbs extension (mhalle) - closed. - 0001522: Make sure GetData special page does NOT pre-append two extra empty lines (mhalle) - closed. - 0001580: Last logo in the documentation wiki is not displayed by the template (jcfr) - closed. - 0001689: [Core: Base Code] crash with lightbox mode and tensors (finetjul) - closed. - 0001658: [Core: Usability] Transform matrix updates do not propagate to the transform node (finetjul) - closed. - 0001504: [Core: Building (CMake, Superbuild)] Expect CTestConfig.cmake in either the build or source directory (jcfr) - closed.Slicer4 - Slicer 4.0.1 ====================== Released for: 2012 Winter NAMIC AHM Commit revision: r19033 - 0002112: [Module Annotations] Need to allow changing fiducial properties all at once in a fiducial list (nicole) - closed. - 0001645: [Core: GUI] update of the mouse mode toolbar (nicole) - closed. - 0001573: [Core: GUI] closing a scene crashes slicer (alexy) - closed. - 0001883: [Module Annotations] Fiducials don't get locked (nicole) - closed. - 0001558: [Core: GUI] Core module documentation SceneViews (nicole) - closed. - 0001557: [Core: GUI] Core module documentation models (nicole) - closed. - 0001646: [Core: Command Line Modules (Modules/CLI)] DicomToNrrdConverter converter crash (pieper) - closed. - 0001835: [Core: MRML] vtkMRMLSceneViewNodeStoreSceneTest produces memory leaks (alexy) - closed. - 0001865: [Module Diffusion] 'Tractography' Module in Slicer4.1? (demian) - closed. - 0001957: [Core: Usability] slice view FOV/spacing options do not work properly with multiple volumes (alexy) - closed. - 0001166: [Core: Usability] Improve layout of 'About dialog' (joe_snyder) - closed. - 0001438: [Core: GUI] hardening the handling of scenes in Slicer (pieper) - closed. - 0001393: [Module Diffusion] Selecting ColorOrientationMiddleEigenvector renders sliceviewers inoperative. (demian) - closed. - 0001493: [Module Annotations] fiducial scaling (nicole) - closed. - 0001501: [Core: GUI] Sceneviews created using the icons in the main gui do not show up in the module panel (nicole) - closed. - 0001559: [Core: GUI] Core module documentation Transforms (alexy) - closed. - 0001507: [Core: GUI] Convert Dicom to DWI module does not allow me to select an input data set (finetjul) - closed. - 0001452: [Module Diffusion] label map seeding has disappeared (jcfr) - closed. - 0001764: [Core: MRML] crash after close scene and loading image (fedorov) - closed. - 0001456: [Module Diffusion] dicom to dwi module is lacking interface (finetjul) - closed. - 0001466: [Module Diffusion] tensor estimation module is missing (jcfr) - closed. - 0001627: [Core: Usability] Creating ROI from combo box crashes slicer (finetjul) - closed. - 0001621: [Core: Base Code] Cannot start the software, Linux (jcfr) - closed. - 0001372: [Core: GUI] tractography fiducial seeding ui improvements (alexy) - closed. - 0001606: [Core: GUI] check box for welcome dialog so it does not come up again (finetjul) - closed. - 0001481: [Core: GUI] qSlicerModulesMenu::setCurrentModule(moduleName) should work with Name instead of Title (finetjul) - closed. - 0001458: [Core: Usability] Drag&Drop in Slicer to quickly load files (BenjaminLong) - closed. - 0001236: [Module VolumeRendering] Volume Rendering on ATI renders black cube (finetjul) - closed. - 0001610: [Module VolumeRendering] Save default VR (finetjul) - closed. - 0001224: [Core: Base Code] Extension - Append Extension/qt-scripted-module subdirectories to python path (jcfr) - closed. - 0001407: [Core: Base Code] loading scenes is very slow (finetjul) - closed. - 0001532: [Core: Packaging] Reduce package size (finetjul) - closed. - 0001491: [Core: Building (CMake, Superbuild)] Fail to build Numpy on ubuntu 11.10 (jcfr) - closed. - 0001450: [Core: GUI] More button to show/hide more buttons (BenjaminLong) - closed. - 0001608: [Core: GUI] volume names always get loaded as "name1" instead of just "name" (pieper) - closed. - 0001364: [Module Diffusion] Nasty DTI viewing segfault (finetjul) - closed.Slicer4 - Slicer 4.0.0 ====================== Released for: 2011 RSNA Commit revision: r18777 - 0001494: [Core: GUI] "Center 3D view" button does not update the position of the 3D cube (finetjul) - resolved. - 0001342: [Core: GUI] Left and Right are inverted in the anatomical directions widget (finetjul) - resolved. - 0001341: [Core: GUI] 2D viewers not synchronized (millerjv) - resolved. - 0001221: [Core: Command Line Modules (Modules/CLI)] Calling modules from the CLI interface using python (finetjul) - resolved. - 0001426: [Module Diffusion] Labelmap seeding has issues (inorton) - closed. - 0001423: [Core: GUI] Volume rendering clipping box still visible after turning off display of visibility (alexy) - closed. - 0001428: [Module Annotations] tweaking annotation properties (nicole) - closed. - 0001551: [Core: Usability] Model does not show up after model maker is completed (nicole) - closed. - 0001544: [Core: Packaging] BRAINSDemonWarp is missing in Win64 packaged Slicer4 (hjmjohnson) - closed. - 0001542: [Core: Command Line Modules (Modules/CLI)] BRAINSFit registration uses only one thread (hjmjohnson) - closed. - 0001465: [Module Annotations] clicking "create hierarchy" in the annotation module crashes slicer (nicole) - closed. - 0001534: [Module Editor] Editor paint effect issues (pieper) - closed. - 0001533: [Module Editor] Crash while trying to use threshold effect (pieper) - closed. - 0001492: [Module EMSegment] EM segment easy does not work (pohl) - closed. - 0001414: [Module Diffusion] Slice intersections do not display for FB loaded from file (inorton) - closed. - 0001330: [Core: Building (CMake, Superbuild)] QT_QTUITOOLS_INCLUDE_DIR doesn't persist in CMakeCache files (jcfr) - closed. - 0001388: [Core: GUI] Slice view doesn't change when after selecting the menu (finetjul) - closed. - 0001464: [Core: Command Line Modules (Modules/CLI)] Slicer crash while trying to call CLI module from python (jcfr) - closed. - 0001322: [Core: GUI] fiducials show up as models in the models module (finetjul) - closed. - 0001310: [Core: GUI] the pull down menu called Window (finetjul) - closed. - 0001319: [Core: GUI] tweaking opacity column in models display (finetjul) - closed. - 0001215: [Core: GUI] Slice viewer: labelmap selector should only allow selection of LabelMap (finetjul) - closed. - 0001324: [Core: GUI] modfying opacity in the listing of models does not work (finetjul) - closed. - 0001329: [Core: GUI] slice viewer popup does not reconfigure when layout is changed. (finetjul) - closed. - 0001242: [Core: GUI] face lift for the models module (finetjul) - closed. - 0001352: [Core: GUI] show options in add data panel is suboptimally formated (finetjul) - closed. - 0001405: [Core: GUI] improve usability of +/- interactions in the slice controller slider (finetjul) - closed. - 0001392: [Core: GUI] welcome module does not come up, when slicer is started (jcfr) - closed. - 0001257: [Core: GUI] Add scalar range in the Information panel of the Volumes module (BenjaminLong) - closed. - 0001253: [Module VolumeRendering] The NCI GPU Ray Casting (Multi-Volume) is currently not supported in Slicer 4 (finetjul) - closed. - 0001411: [Core: MRML] Deleting FBNode causes ASSERT crash (alexy) - closed. - 0001362: [Core: Usability] slicer crashes after layout change (finetjul) - closed. - 0001247: [Core: GUI] restore view crashes slicer (finetjul) - closed. - 0001246: [Core: GUI] color selection does not work in slicer nightly (finetjul) - closed. - 0001214: [Core: GUI] Labelmap flag automagically unset (finetjul) - closed. - 0001183: [Core: Building (CMake, Superbuild)] SlicerLauncher - Slicer4 won't start with relative path (jcfr) - closed. - 0001176: [Core: MRML] Crash when loading KneeAtlas2011.zip (finetjul) - closed. - 0001173: [Core: Usability] AnnotationFiducial placement to model (nicole) - closed. - 0001172: [Core: Base Code] model opacity change causes crash using AnnotationRuler (finetjul) - closed. - 0001170: [Core: GUI] model deletion in data view does not remove from 3d view (finetjul) - closed. - 0001168: [Core: Building (CMake, Superbuild)] Fix race condition related to copying/compiling of python scripts (jcfr) - closed. - 0001158: [Core: GUI] Right click menu in qMRMLTreeView (finetjul) - closed. - 0001182: [Core: Building (CMake, Superbuild)] Add macro to build Widgets module sub library (jcfr) - closed. - 0001155: [Core: Packaging] Slicer launcher to support Qt designer (jcfr) - closed. - 0001147: [Core: Base Code] selecting lightbox 3x3 crashes Slicer (finetjul) - closed. - 0001136: [Core: GUI] Wrong Color Lookup table icon in the color node selector (finetjul) - closed. - 0001135: [Core: GUI] WindowLevel widget: support small range (finetjul) - closed. - 0001134: [Core: GUI] Volumes module: DTI with W/L fails to choose auto mode (finetjul) - closed. - 0001133: [Core: GUI] Offset between label/scalar volumes (finetjul) - closed. - 0001124: [Core: GUI] text filter in the data tree (finetjul) - closed. - 0001122: [Core: GUI] Sync height of buttons and comboboxes (finetjul) - closed. - 0001181: [Core: Building (CMake, Superbuild)] Remove "_XOPEN_SOURCE redefined" warning (jcfr) - closed. - 0001197: [Core: GUI] Performance: scrolling volume (esp. on Windows 7) (finetjul) - closed. - 0001195: [Core: Usability] Annotation: regression in hierarchy tree view (finetjul) - closed. - 0001206: [Core: Base Code] Tests failure because of assert in vtkMRMLSliceLogic - line 438 (finetjul) - closed. - 0001205: [Core: Base Code] Tests failure because of problem in qMRMLSceneColorTableModel::updateGradientFromNode (finetjul) - closed. - 0001203: [Core: MRML] Harden Transform is not working (finetjul) - closed. - 0001210: [Core: Command Line Modules (Modules/CLI)] DicomToNrrdConverterTest failure (jcfr) - closed. - 0001193: [Core: GUI] Assert in the qMRMLSceneModel when deleting a parent node (finetjul) - closed. - 0001198: [Core: GUI] Annotation: can't create Hierarchy from qMRMLNodeComboBox (alexy) - closed. - 0001498: [Module EMSegment] EM segmenter does not work on win 64 (pohl) - closed. - 0001343: [Core: GUI] failure to put a volume under a transform (finetjul) - closed. - 0001520: [Module VolumeRendering] granularity of the STF slider is wrong (finetjul) - closed. - 0001503: [Core: Usability] _seg.nii.gz files no longer auto select as "label images" (finetjul) - closed. - 0001506: [Module EMSegment] EM segment does not work (jcfr) - closed. - 0001339: [Core: GUI] link does not work for selecting label maps for viewers - closed. - 0001519: [Core: Base Code] rendering of triangulated 3d models has slowed down noticably (finetjul) - closed. - 0001338: [Core: Base Code] Color by orientation stoped working (pieper) - closed. - 0001569: [Core: GUI] undo redo toolbar is empty (finetjul) - closed. - 0001582: [Module VolumeRendering] NCI raycaster is not updating after transform is changed (finetjul) - closed. - 0001528: [Module VolumeRendering] VolumeRendering of label maps: assertion failure and crash (finetjul) - closed. - 0001371: [Core: Base Code] CLI - Should be possible to set "string-enumeration" as hidden parameter (finetjul) - closed. - 0001490: [Core: GUI] center 3d view on the scene does not work in 3d viewer 1 (finetjul) - closed. - 0001567: [Module VolumeRendering] Display box visibility buttons not in sync (finetjul) - closed. - 0001451: [Core: GUI] when loading a scene, the gradient in the 3D viewer is dark grey to light grey, instead of a blue gradient (finetjul) - closed. - 0001553: [Core: MRML] ModelDisplayableManager segfault (alexy) - closed. - 0001445: [Module Editor] Change Label doesn't seem to do anything (pieper) - closed. - 0001443: [Core: GUI] Model view: opacity slider popup is (very much!) too big on linux (finetjul) - closed. - 0001439: [Module Editor] editor is missing (pieper) - closed. - 0001508: [Module VolumeRendering] transfer functions do not look correct. (finetjul) - closed. - 0001416: [Module Diffusion] Cannot return fiberbundle display type to scalar after setting to 'by ID' (demian) - closed. - 0001556: [Core: GUI] Core module documentation (finetjul) - closed. - 0001484: [Core: GUI] replace the color module icon short cut with a shortcut for the cross-hairs (millerjv) - closed. - 0001404: [Core: GUI] toggle between label outline and filled does not work (finetjul) - closed. - 0001397: [Module SceneViews] Restoring sceneviews has problems (alexy) - closed. - 0001561: [Core: GUI] Core module documentation Volume Rendering (finetjul) - closed. - 0001346: [Core: GUI] Slicer4 GUI: suggested revision for BRAINSfit GUI (hjmjohnson) - closed. - 0001328: [Core: GUI] bundle old/obsolete registration modules in a "Legacy" submenu (nicole) - closed. - 0001327: [Core: GUI] Slicer4: ExpertAutomated Registration "Apply" button does not dim/disable upon launch (finetjul) - closed. - 0001264: [Core: Base Code] Modules don't check AA_DisablePython before init pythonqt wrappers (jcfr) - closed. - 0001271: [Core: Command Line Modules (Modules/CLI)] CLI Modules lock/freeze GUI when running (finetjul) - closed. - 0001275: [Core: Building (CMake, Superbuild)] Problem building on Mac concerning Qt Ui Tools (jcfr) - closed. - 0001296: [Core: GUI] cosmetics for the Tractography Display Module (inorton) - closed. - 0001276: [Core: Building (CMake, Superbuild)] OpenSuse - Build Slicer failed with error related to libbfd (jcfr) - closed. - 0001272: [Core: Packaging] Mac package - Model module is not available (jcfr) - closed. - 0001290: [Core: Building (CMake, Superbuild)] Slicer4 Building Error on Mac - path of Qt UI Tools (jcfr) - closed. - 0001303: [Core: Building (CMake, Superbuild)] Slicerlauncher - Launcher executable not copied if deleted from build tree (jcfr) - closed. - 0001261: [Core: GUI] pan and zoom stopped working in the slice viewers (jcfr) - closed. - 0001223: [Core: Base Code] Add Extension/qt-loadable-modules to python path (jcfr) - closed. - 0001187: [Module SceneViews] Refresh problem in the (nicole) - closed. - 0001188: [Module SceneViews] screenshot and icon display problem in SceneViews (nicole) - closed. - 0001208: [Core: Base Code] qSlicerCropVolumeModuleTest1 failure (fedorov) - closed. - 0001311: [Core: GUI] CLI - Cancel button disabled by default (finetjul) - closed. - 0001222: [Core: Packaging] Extension - Detect superbuild structure for packaging to work properly (jcfr) - closed. - 0001237: [Core: GUI] Color gradient in VTK charts is not smooth (finetjul) - closed. - 0001274: [Core: Base Code] slice pipeline does not re-execute for changes to label layer image data (finetjul) - closed. - 0001381: [Module Diffusion] Fibers reset to tubes after tractography (alexy) - closed. - 0001496: [Core: GUI] crash with LabelMap checkbox in Volumes Info (finetjul) - closed. - 0001396: [Core: GUI] slow scene loading when ctkVTKThumbnailWidget is enabled (finetjul) - closed. - 0001384: [Core: GUI] Slice intersections only work in green viewer (inorton) - closed. - 0001403: [Core: GUI] Add data combines 2D slices into one volume (finetjul) - closed. - 0001201: [Core: MRML] failure in "paint" option of "edit selected label map" (pieper) - closed. - 0001202: [Core: MRML] problem in creating new label map (pieper) - closed. - 0001120: [Core: GUI] Use combobox for module selector menu; move to the module widget area (BenjaminLong) - closed. - 0001524: [Core: Base Code] Volumes Logic : Scalar type after reading in volume with AddArchetypeScalarVolume not correct (finetjul) - closed. - 0001238: [Module VolumeRendering] Color in VTK chart control points (finetjul) - closed. - 0001288: [Core: GUI] More space around the transfer function editors (finetjul) - closed. - 0001356: [Core: Base Code] wrapping problem for QTModules in python (user297) - closed. - 0001200: [Core: GUI] JumpAllSlices resets field of view on the SliceNodes (nicole) - closed. - 0001171: Magnifier hangs (finetjul) - closed. - 0001482: [Core: GUI] Welcome module isn't selected if Slicer started with an empty settings files (finetjul) - closed. - 0001432: [Module Diffusion] loading scene with Fiducail Seeding module parameters does not activate the module (alexy) - closed. - 0001480: [Core: Base Code] Enforce the lenght of Slicer src/build to not go over 50 chars on Windows (jcfr) - closed. - 0001289: [Module VolumeRendering] Volume Rendering state not saved in Scene Views (finetjul) - closed. - 0001435: [Core: GUI] Factorize Screenshot dialogs from Annotations and Scene views (BenjaminLong) - closed. - 0001244: [Core: GUI] Add search feature in the Color node selector (BenjaminLong) - closed. - 0001284: [Core: GUI] Search color in the color dialog (BenjaminLong) - closed. - 0001314: [Core: Base Code] Editor Module - Grow cut fails to work (pieper) - closed. - 0001273: [Core: Base Code] Mac package - Load data -> entering the slice controllers -> crashes slicer (finetjul) - closed. - 0001560: [Core: Documentation & Wiki] Core module documentation ViewControllers (millerjv) - closed. - 0001562: [Core: Documentation & Wiki] Core module documentation SlicerWelcome (wjp) - closed. - 0001286: [Core: GUI] Threshold widget shall automatically turn on when user interacts with it (finetjul) - closed. - 0001252: [Module VolumeRendering] Request for a simple intial presentation of the VR module (finetjul) - closed. - 0001235: [Module VolumeRendering] Remember last GPU memory size (finetjul) - closed. - 0001250: [Core: GUI] After turning visibility on in volume rendering, nothing happens. I have to click in the 3D view, for the rendering to happen (finetjul) - closed. - 0001239: [Module VolumeRendering] Link VTK chart editor sliders (finetjul) - closed. - 0001093: [Core: GUI] AnnotationFiducial: interface and tweaks (nicole) - closed. - 0001157: [Core: GUI] Slice view features are missing (finetjul) - closed. - 0001457: [Core: GUI] Checkbox with in place of the check box (BenjaminLong) - closed. - 0001448: [Core: Usability] Performance: zooming and other tcl-hosted, dragging functions are very slow on windows (pieper) - closed. - 0001454: [Core: Scripting (Wrapping, Python)] Crash in Python when loading twice an empty scene (pieper) - closed. - 0001513: [Module EMSegment] EMSegmenter Fast: Incorrect labels in Step 3 (pohl) - closed. - 0001517: [Module EMSegment] Preprocessing returns inconsistent scalar volume (pohl) - closed. - 0001375: [Core: Packaging] QT_PLUGIN_PATH not set right on windows install (jcfr) - closed. - 0001207: [Core: Base Code] qSlicerAnnotationModuleTest1 failure (jcfr) - closed. - 0001348: [Core: Usability] color by orientation w/l (finetjul) - closed. - 0001358: [Core: GUI] Data module display is inconsistent (finetjul) - closed. - 0001353: [Core: Base Code] resizing the window with dti in color by orientation crashes slicer (finetjul) - closed. - 0001377: [Core: Usability] CLI - Make sure acknowledgments are properly reported (finetjul) - closed. - 0001421: [Core: GUI] slice controllers cosmetics (finetjul) - closed. - 0001420: [Core: GUI] tweaks for the slice controller pop up (finetjul) - closed. - 0001260: [Module Diffusion] when adding a second fiducial to the annotationfiducialslist, tractography fiducial seeding works only with the first one. (alexy) - closed. - 0001266: [Core: Usability] Fiducials act strangely (haehn) - closed. - 0001297: [Core: GUI] CLI volume selections are not highlighted (BenjaminLong) - closed. - 0001305: [Core: Base Code] sample data/download MRHead does not work (jcfr) - closed. - 0001344: [Core: GUI] defaults for glyphs in tractography display module (inorton) - closed. - 0001351: [Core: GUI] Optimize defaults for fiducial seeding (alexy) - closed. - 0001354: [Core: GUI] Settings dialog minor issues (BenjaminLong) - closed. - 0001361: [Core: GUI] Fiducials show up on wrong location in the slice viewers (haehn) - closed. - 0001366: [Core: Base Code] Streamlines scalar mapping changes when it should not. (demian) - closed. - 0001368: [Module Diffusion] glyph display from slices is not correct (alexy) - closed. - 0001394: [Core: GUI] vtkImageResliceMask extent issue when resizing with glyphs displayed (finetjul) - closed. - 0001431: [Module VolumeRendering] loading a .vp node crashes slicer (finetjul) - closed. - 0001417: [Core: GUI] scene open is not retaining favorites (BenjaminLong) - closed. - 0001337: [Core: GUI] View controller bar look&feel (finetjul) - closed. - 0001415: [Module Diffusion] Color by FiberBundle Node ID causes segfault (alexy) - closed. - 0001430: [Core: MRML] remove Undo/Redo functionality from slicer4 until it works properly (alexy) - closed. - 0001410: [Core: GUI] Can't use slice +/- with large slice thickness volume (finetjul) - closed. - 0001281: [Core: GUI] cosmetics for the editor tool (pieper) - closed. - 0001382: [Module Annotations] move screen cap and scene view buttons to top tool bar (nicole) - closed. - 0001255: [Core: GUI] reset slice views to first coordinate produces unexpected results (nicole) - closed. - 0001363: [Core: GUI] DWI display node auto-level not set on volume load (finetjul) - closed. - 0001216: [Core: MRML] [Slicer4] Slice volume selectors are not restored correctly from the scene (millerjv) - closed. - 0001320: [Core: GUI] label map transparency pop up is behind the slice controller pop up (finetjul) - closed. - 0001229: [Core: MRML] loading scene with fg/and bg does not work (finetjul) - closed. - 0001213: [Module Diffusion] TractographyDisplay doesn't update correctly when module already open (inorton) - closed. - 0001162: [Core: MRML] DTVolume Auto window-level strange behavior. (finetjul) - closed. - 0001178: [Core: GUI] Save dialog - Selected "destination folder" not applied to all data - closed. - 0001105: [Core: Command Line Modules (Modules/CLI)] DT Estim runs as SharedObjectModule rather than CommandLineModule (jcfr) - closed. - 0001373: [Core: Usability] Dicom module fails to load data (user297) - closed. - 0001218: [Core: GUI] Scrolling to end slice crashes Slicer (haehn) - closed.Slicer4 - Slicer 4.0 gamma RC3 ============================== - 0001089: [Core: GUI] AnnotationFiducial: selected parameter (nicole) - closed. - 0001092: AnnotationFiducial: 3d interaction (nicole) - closed. - 0001138: Hide GUI-less modules (finetjul) - closed. - 0001190: [Core: MRML] pull down menu does not appear for the items in MRML tree (finetjul) - closed. - 0001191: [Core: MRML] White Matter Exploration dataset crashes in load (finetjul) - closed. - 0001512: [Core: GUI] Module for reformatting (Michael Jeulin-L) - closed. - 0001282: [Core: Command Line Modules (Modules/CLI)] modelmaker fails (finetjul) - closed.Slicer4 - Slicer 4.0 gamma RC1 ============================== - 0001177: [Core: Building (CMake, Superbuild)] Windows64 - Editor module isn't available (jcfr) - closed.

Mantis 1.1.4[^]