0001873: Saving a scene with a new LUT

# Color table file /Users/spujol/tmpSonia/MyGenericAnatomyColors.txt # 309 values 0 background 0 0 0 0 1 tissue 128 174 128 255 2 bone 241 214 145 255 3 skin 177 122 101 255 4 connective_tissue 111 184 210 255 5 blood 216 101 79 255 6 organ 221 130 101 255 7 mass 144 238 144 255 8 muscle 192 104 88 255 9 foreign_object 220 245 20 255 10 waste 78 63 0 255 11 teeth 255 250 220 255 12 fat 230 220 70 255 13 gray_matter 200 200 235 255 14 white_matter 250 250 210 255 15 nerve 244 214 49 255 16 vein 0 151 206 255 17 artery 216 101 79 255 18 capillary 183 156 220 255 19 ligament 183 214 211 255 20 tendon 152 189 207 255 21 cartilage 111 184 210 255 22 meniscus 178 212 242 255 23 lymph_node 68 172 100 255 24 lymphatic_vessel 111 197 131 255 25 cerebro-spinal_fluid 85 188 255 255 26 bile 0 145 30 255 27 urine 214 230 130 255 28 feces 78 63 0 255 29 gas 218 255 255 255 30 fluid 170 250 250 255 31 edema 140 224 228 255 32 bleeding 188 65 28 255 33 necrosis 216 191 216 255 34 clot 145 60 66 255 35 embolism 150 98 83 255 36 head 177 122 101 255 37 central_nervous_system 244 214 49 255 38 brain 250 250 225 255 39 gray_matter_of_brain 200 200 215 255 40 telencephalon 68 131 98 255 41 cerebral_cortex 128 174 128 255 42 right_frontal_lobe 83 146 164 255 43 left_frontal_lobe 83 146 164 255 44 right_temporal_lobe 162 115 105 255 45 left_temporal_lobe 162 115 105 255 46 right_parietal_lobe 141 93 137 255 47 left_parietal_lobe 141 93 137 255 48 right_occipital_lobe 182 166 110 255 49 left_occipital_lobe 182 166 110 255 50 right_insular_lobe 188 135 166 255 51 left_insular_lobe 188 135 166 255 52 right_limbic_lobe 154 150 201 255 53 left_limbic_lobe 154 150 201 255 54 right_striatum 177 140 190 255 55 left_striatum 177 140 190 255 56 right_caudate_nucleus 30 111 85 255 57 left_caudate_nucleus 30 111 85 255 58 right_putamen 210 157 166 255 59 left_putamen 210 157 166 255 60 right_pullidum 48 129 126 255 61 left_pallidum 48 129 126 255 62 right_amygdaloid_complex 98 153 112 255 63 left_amygdaloid_complex 98 153 112 255 64 diencephalon 69 110 53 255 65 thalamus 166 113 137 255 66 right_thalamus 122 101 38 255 67 left_thalamus 122 101 38 255 68 pineal_gland 253 135 192 255 69 midbrain 145 92 109 255 70 substantia_nigra 46 101 131 255 71 right_substantia_nigra 0 108 112 255 72 left_substantia_nigra 0 108 112 255 73 cerebral_white_matter 250 250 225 255 74 right_superior_longitudinal_fasciculus 127 150 88 255 75 left_superior_longitudinal_fasciculus 127 150 88 255 76 right_inferior_longitudinal_fasciculus 159 116 163 255 77 left_inferior_longitudinal_fasciculus 159 116 163 255 78 right_arcuate_fasciculus 125 102 154 255 79 left_arcuate_fasciculus 125 102 154 255 80 right_uncinate_fasciculus 106 174 155 255 81 left_uncinate_fasciculus 106 174 155 255 82 right_cingulum_bundle 154 146 83 255 83 left_cingulum_bundle 154 146 83 255 84 projection_fibers 126 126 55 255 85 right_corticospinal_tract 201 160 133 255 86 left_corticospinal_tract 201 160 133 255 87 right_optic_radiation 78 152 141 255 88 left_optic_radiation 78 152 141 255 89 right_medial_lemniscus 174 140 103 255 90 left_medial_lemniscus 174 140 103 255 91 right_superior_cerebellar_peduncle 139 126 177 255 92 left_superior_cerebellar_peduncle 139 126 177 255 93 right_middle_cerebellar_peduncle 148 120 72 255 94 left_middle_cerebellar_peduncle 148 120 72 255 95 right_inferior_cerebellar_peduncle 186 135 135 255 96 left_inferior_cerebellar_peduncle 186 135 135 255 97 optic_chiasm 99 106 24 255 98 right_optic_tract 156 171 108 255 99 left_optic_tract 156 171 108 255 100 right_fornix 64 123 147 255 101 left_fornix 64 123 147 255 102 commissural_fibers 138 95 74 255 103 corpus_callosum 97 113 158 255 104 posterior_commissure 126 161 197 255 105 cerebellar_white_matter 194 195 164 255 106 CSF_space 85 188 255 255 107 ventricles_of_brain 88 106 215 255 108 right_lateral_ventricle 88 106 215 255 109 left_lateral_ventricle 88 106 215 255 110 right_third_ventricle 88 106 215 255 111 left_third_ventricle 88 106 215 255 112 cerebral_aqueduct 88 106 215 255 113 fourth_ventricle 88 106 215 255 114 subarachnoid_space 88 106 215 255 115 spinal_cord 244 214 49 255 116 gray_matter_of_spinal_cord 200 200 215 255 117 white_matter_of_spinal_cord 250 250 225 255 118 endocrine_system_of_brain 82 174 128 255 119 pituitary_gland 57 157 110 255 120 adenohypophysis 60 143 83 255 121 neurohypophysis 92 162 109 255 122 meninges 255 244 209 255 123 dura_mater 255 244 209 255 124 arachnoid 255 244 209 255 125 pia_mater 255 244 209 255 126 muscles_of_head 201 121 77 255 127 salivary_glands 70 163 117 255 128 lips 188 91 95 255 129 nose 177 122 101 255 130 tongue 166 84 94 255 131 soft_palate 182 105 107 255 132 right_inner_ear 229 147 118 255 133 left_inner_ear 229 147 118 255 134 right_external_ear 174 122 90 255 135 left_external_ear 174 122 90 255 136 right_middle_ear 201 112 73 255 137 left_middle_ear 201 112 73 255 138 right_eyeball 194 142 0 255 139 left_eyeball 194 142 0 255 140 skull 241 213 144 255 141 right_frontal_bone 203 179 77 255 142 left_frontal_bone 203 179 77 255 143 right_parietal_bone 229 204 109 255 144 left_parietal_bone 229 204 109 255 145 right_temporal_bone 255 243 152 255 146 left_temporal_bone 255 243 152 255 147 right_sphenoid_bone 209 185 85 255 148 left_sphenoid_bone 209 185 85 255 149 right_ethmoid_bone 248 223 131 255 150 left_ethmoid_bone 248 223 131 255 151 occipital_bone 255 230 138 255 152 maxilla 196 172 68 255 153 right_zygomatic_bone 255 255 167 255 154 right_lacrimal_bone 255 250 160 255 155 vomer_bone 255 237 145 255 156 right_palatine_bone 242 217 123 255 157 left_palatine_bone 242 217 123 255 158 mandible 222 198 101 255 159 neck 177 122 101 255 160 muscles_of_neck 213 124 109 255 161 pharynx 184 105 108 255 162 larynx 150 208 243 255 163 thyroid_gland 62 162 114 255 164 right_parathyroid_glands 62 162 114 255 165 left_parathyroid_glands 62 162 114 255 166 skeleton_of_neck 242 206 142 255 167 hyoid_bone 250 210 139 255 168 cervical_vertebral_column 255 255 207 255 169 thorax 177 122 101 255 170 trachea 182 228 255 255 171 bronchi 175 216 244 255 172 right_lung 197 165 145 255 173 left_lung 197 165 145 255 174 superior_lobe_of_right_lung 172 138 115 255 175 superior_lobe_of_left_lung 172 138 115 255 176 middle_lobe_of_right_lung 202 164 140 255 177 inferior_lobe_of_right_lung 224 186 162 255 178 inferior_lobe_of_left_lung 224 186 162 255 179 pleura 255 245 217 255 180 heart 206 110 84 255 181 right_atrium 210 115 89 255 182 left_atrium 203 108 81 255 183 atrial_septum 233 138 112 255 184 ventricular_septum 195 100 73 255 185 right_ventricle_of_heart 181 85 57 255 186 left_ventricle_of_heart 152 55 13 255 187 mitral_valve 159 63 27 255 188 tricuspid_valve 166 70 38 255 189 aortic_valve 218 123 97 255 190 pulmonary_valve 225 130 104 255 191 aorta 224 97 76 255 192 pericardium 255 244 209 255 193 pericardial_cavity 184 122 154 255 194 esophagus 211 171 143 255 195 thymus 47 150 103 255 196 mediastinum 255 244 209 255 197 skin_of_thoracic_wall 173 121 88 255 198 muscles_of_thoracic_wall 188 95 76 255 199 skeleton_of_thorax 255 239 172 255 200 thoracic_vertebral_column 226 202 134 255 201 ribs 253 232 158 255 202 sternum 244 217 154 255 203 right_clavicle 205 179 108 255 204 left_clavicle 205 179 108 255 205 abdominal_cavity 186 124 161 255 206 abdomen 177 122 101 255 207 peritoneum 255 255 220 255 208 omentum 234 234 194 255 209 peritoneal_cavity 204 142 178 255 210 retroperitoneal_space 180 119 153 255 211 stomach 216 132 105 255 212 duodenum 255 253 229 255 213 small_bowel 205 167 142 255 214 colon 204 168 143 255 215 anus 255 224 199 255 216 liver 221 130 101 255 217 biliary_tree 0 145 30 255 218 gallbladder 139 150 98 255 219 pancreas 249 180 111 255 220 spleen 157 108 162 255 221 urinary_system 203 136 116 255 222 right_kidney 185 102 83 255 223 left_kidney 185 102 83 255 224 right_ureter 247 182 164 255 225 left_ureter 247 182 164 255 226 urinary_bladder 222 154 132 255 227 urethra 124 186 223 255 228 right_adrenal_gland 249 186 150 255 229 left_adrenal_gland 249 186 150 255 230 female_internal_genitalia 244 170 147 255 231 uterus 255 181 158 255 232 right_fallopian_tube 255 190 165 255 233 left_fallopian_tube 227 153 130 255 234 right_ovary 213 141 113 255 235 left_ovary 213 141 113 255 236 vagina 193 123 103 255 237 male_internal_genitalia 216 146 127 255 238 prostate 230 158 140 255 239 right_seminal_vesicle 245 172 147 255 240 left_seminal_vesicle 245 172 147 255 241 right_deferent_duct 241 172 151 255 242 left_deferent_duct 241 172 151 255 243 skin_of_abdominal_wall 177 124 92 255 244 muscles_of_abdominal_wall 171 85 68 255 245 skeleton_of_abdomen 217 198 131 255 246 lumbar_vertebral_column 212 188 102 255 247 female_external_genitalia 185 135 134 255 248 male_external_genitalia 185 135 134 255 249 skeleton_of_upper_limb 198 175 125 255 250 muscles_of_upper_limb 194 98 79 255 251 right_upper_limb 177 122 101 255 252 left_upper_limb 177 122 101 255 253 right_shoulder 177 122 101 255 254 left_shoulder 177 122 101 255 255 right_arm 177 122 101 255 256 left_arm 177 122 101 255 257 right_elbow 177 122 101 255 258 left_elbow 177 122 101 255 259 right_forearm 177 122 101 255 260 left_forearm 177 122 101 255 261 right_wrist 177 122 101 255 262 left_wrist 177 122 101 255 263 right_hand 177 122 101 255 264 left_hand 177 122 101 255 265 skeleton_of_lower_limb 255 238 170 255 266 muscles_of_lower_limb 206 111 93 255 267 right_lower_limb 177 122 101 255 268 left_lower_limb 177 122 101 255 269 right_hip 177 122 101 255 270 left_hip 177 122 101 255 271 right_thigh 177 122 101 255 272 left_thigh 177 122 101 255 273 right_knee 177 122 101 255 274 left_knee 177 122 101 255 275 right_leg 177 122 101 255 276 left_leg 177 122 101 255 277 right_foot 177 122 101 255 278 left_foot 177 122 101 255 279 peripheral_nervous_system 216 186 0 255 280 autonomic_nerve 255 226 77 255 281 sympathetic_trunk 255 243 106 255 282 cranial_nerves 255 234 92 255 283 vagus_nerve 240 210 35 255 284 peripheral_nerve 224 194 0 255 285 circulatory_system 213 99 79 255 286 systemic_arterial_system 217 102 81 255 287 systemic_venous_system 0 147 202 255 288 pulmonary_arterial_system 0 122 171 255 289 pulmonary_venous_system 186 77 64 255 290 lymphatic_system 111 197 131 255 291 needle 240 255 30 255 292 region_0 185 232 61 255 293 region_1 0 226 255 255 294 region_2 251 159 255 255 295 region_3 230 169 29 255 296 region_4 0 194 113 255 297 region_5 104 160 249 255 298 region_6 221 108 158 255 299 region_7 137 142 0 255 300 region_8 230 70 0 255 301 region_9 0 147 0 255 302 region_10 0 147 248 255 303 region_11 231 0 206 255 304 region_12 129 78 0 255 305 region_13 0 116 0 255 306 region_14 0 0 255 255 307 region_15 157 0 0 255 308 unknown 100 100 130 255

Issue History
Date Modified	Username	Field	Change
2012-04-08 15:02	spujol	New Issue
2012-04-08 15:02	spujol	Status	new => assigned
2012-04-08 15:02	spujol	Assigned To	=> finetjul
2012-04-09 10:37	finetjul	Note Added: 0003985
2012-04-09 10:37	finetjul	Status	assigned => feedback
2012-04-09 14:00	spujol	File Added: MyGenericAnatomyColors.txt
2012-04-09 14:00	spujol	File Added: screenShot.png
2012-04-10 09:55	spujol	Note Added: 0003994
2012-04-10 15:23	finetjul	Status	feedback => assigned
2012-04-10 15:23	finetjul	Assigned To	finetjul => nicole
2012-08-20 14:24	nicole	Target Version	=> Slicer 4.2.5
2012-08-21 13:39	jcfr	Target Version	Slicer 4.2.5 => Slicer 4.3.0

Notes
(0003985) finetjul (administrator) 2012-04-09 10:37	I can't reproduce. Can you provide step by step directions ? Thanks.

(0003994) spujol (developer) 2012-04-10 09:55	1) File-->Add Data to load the color table MyGenericAnatomyColors.txt 2) Module SampleData: Download the dataset CTChest 3) File-->Save Scene (Mac OS Snow Leopard)

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