EMLocalInterface.h File Reference

#include "vtkEMSegment.h"
#include "vtkMultiThreader.h"

Go to the source code of this file.

Classes
class	EMLocal_Hierarchical_Class_Parameters
Defines
#define	_EMLOCALINTERFACE_H_INCLUDED   1
#define	EMLOCALSEGMENTER_MAX_MULTI_THREAD   -1
#define	EMSEGMENT_PCASHAPE_APPLY   2
#define	EMSEGMENT_PCASHAPE_DEPENDENT   0
#define	EMSEGMENT_PCASHAPE_INDEPENDENT   1
#define	EMSEGMENT_REGISTRATION_APPLY   1
#define	EMSEGMENT_REGISTRATION_CLASS_ONLY   3
#define	EMSEGMENT_REGISTRATION_DISABLED   0
#define	EMSEGMENT_REGISTRATION_GLOBAL_ONLY   2
#define	EMSEGMENT_REGISTRATION_INTERPOLATION_LINEAR   1
#define	EMSEGMENT_REGISTRATION_INTERPOLATION_NEIGHBOUR   2
#define	EMSEGMENT_REGISTRATION_POWELL   2
#define	EMSEGMENT_REGISTRATION_SEQUENTIAL   5
#define	EMSEGMENT_REGISTRATION_SIMPLEX   1
#define	EMSEGMENT_REGISTRATION_SIMULTANEOUS   4
#define	EMSEGMENT_STOP_FIXED   0
#define	EMSEGMENT_STOP_LABELMAP   1
#define	EMSEGMENT_STOP_WEIGHTS   2
Functions
float	EMLocalInterface_CalcDistanceMap (const float *ShapeParameter, float **PCAEigenVectorsPtr, float *MeanShape, int DimEigenVector, int VoxelJump)
float	EMLocalInterface_CalcDistanceMap (const double *ShapeParameter, float **PCAEigenVectorsPtr, float *MeanShape, int DimEigenVector, int VoxelJump)
int	EMLocalInterface_DefineMultiThreadJump (int *Start, int BoundaryMaxX, int BoundaryMaxY, int DataIncY, int DataIncZ)
void	EMLocalInterface_findCoordInTargetOfMatchingSourceCentreTarget (float *invRot, float *invTran, int ccol, int crow, int cslice, float &ocol, float &orow, float &oslice, float Image_MidX, float Image_MidY, float Image_MidZ)
int	EMLocalInterface_GetDefaultNumberOfThreads (int DisableFlag)
template<class T >
void	EMLocalInterface_Interpolation (float col, float row, float slice, int ncol, int nrow, int nslice, T *data, int dataIncY, int dataIncZ, int InterpolationType, int *Image_Length, double &result)
template<class T >
double	EMLocalInterface_Interpolation (float col, float row, float slice, int ncol, int nrow, int nslice, T *data, int dataIncY, int dataIncZ, int InterpolationType, int *Image_Length)
int	EMLocalInterface_InterpolationNearestNeighbourVoxelIndex (float col, float row, float slice, int dataIncY, int dataIncZ, int *Image_Length)

---

Define Documentation

#define _EMLOCALINTERFACE_H_INCLUDED   1

#define EMLOCALSEGMENTER_MAX_MULTI_THREAD   -1

Referenced by EMLocalInterface_GetDefaultNumberOfThreads().

#define EMSEGMENT_PCASHAPE_APPLY   2

Referenced by vtkImageEMLocalSuperClass::SetPCAShapeModelTypeToApply().

#define EMSEGMENT_PCASHAPE_DEPENDENT   0

Referenced by EMLocalShapeCostFunction::ComputeCostFunction(), vtkImageEMLocalSuperClass::SetPCAShapeModelTypeToClassDependent(), EMLocalShapeCostFunction::TransfereArrayIntoPCAShapeParameters(), and EMLocalShapeCostFunction::TransferePCAShapeParametersIntoArray().

#define EMSEGMENT_PCASHAPE_INDEPENDENT   1

Referenced by vtkImageEMLocalSuperClass::CreateVariables(), EMLocalShapeCostFunction_CalculateCostFunction(), and vtkImageEMLocalSuperClass::SetPCAShapeModelTypeToClassIndependent().

#define EMSEGMENT_REGISTRATION_APPLY   1

Referenced by EMLocalRegistrationCostFunction::ComputeCostFunction(), vtkImageEMLocalSegmenter::HierarchicalSegmentation(), and vtkImageEMLocalSuperClass::SetRegistrationTypeToApply().

#define EMSEGMENT_REGISTRATION_CLASS_ONLY   3

Referenced by EMLocalRegistrationCostFunction::ComputeCostFunction(), EMLocalRegistrationCostFunction::FinalizeCostFunction(), vtkImageEMLocalSuperClass::GetRegistrationClassSpecificParameterList(), vtkImageEMLocalSegmenter::HierarchicalSegmentation(), EMLocalRegistrationCostFunction::InitializeCostFunction(), and vtkImageEMLocalSuperClass::SetRegistrationTypeToClassOnly().

#define EMSEGMENT_REGISTRATION_DISABLED   0

Referenced by EMLocalShapeCostFunction_CalculateCostFunction(), vtkImageEMLocalSegmenter::HierarchicalSegmentation(), EMLocalShapeCostFunction::InitializeCostFunction(), EMLocalRegistrationCostFunction::InitializeParameters(), and vtkImageEMLocalSuperClass::SetRegistrationTypeToDisabled().

#define EMSEGMENT_REGISTRATION_GLOBAL_ONLY   2

Referenced by EMLocalRegistrationCostFunction::ComputeCostFunction(), EMLocalRegistrationCostFunction::CostFunction_Sum_WeightxProbability(), EMLocalShapeCostFunction_CalculateCostFunction(), EMLocalRegistrationCostFunction::FinalizeCostFunction(), vtkImageEMLocalSuperClass::GetRegistrationClassSpecificParameterList(), vtkImageEMLocalSegmenter::HierarchicalSegmentation(), EMLocalRegistrationCostFunction::InitializeCostFunction(), and vtkImageEMLocalSuperClass::SetRegistrationTypeToGlobalOnly().

#define EMSEGMENT_REGISTRATION_INTERPOLATION_LINEAR   1

Referenced by vtkEMSegmentLogic::ConvertGUIEnumToAlgorithmEnumInterpolationType(), vtkImageEMLocalSegmenter::SetInterpolationToLinear(), and vtkImageEMLocalSegmenterExecute().

#define EMSEGMENT_REGISTRATION_INTERPOLATION_NEIGHBOUR   2

Referenced by vtkEMSegmentLogic::ConvertGUIEnumToAlgorithmEnumInterpolationType(), EMLocalInterface_Interpolation(), and vtkImageEMLocalSegmenter::SetInterpolationToNearestNeighbour().

#define EMSEGMENT_REGISTRATION_POWELL   2

#define EMSEGMENT_REGISTRATION_SEQUENTIAL   5

Referenced by vtkImageEMLocalSegmenter::HierarchicalSegmentation(), and vtkImageEMLocalSuperClass::SetRegistrationTypeToSequential().

#define EMSEGMENT_REGISTRATION_SIMPLEX   1

#define EMSEGMENT_REGISTRATION_SIMULTANEOUS   4

Referenced by EMLocalRegistrationCostFunction::ComputeCostFunction(), vtkImageEMLocalSegmenter::HierarchicalSegmentation(), EMLocalRegistrationCostFunction::InitializeCostFunction(), and vtkImageEMLocalSuperClass::SetRegistrationTypeToSimultaneous().

#define EMSEGMENT_STOP_FIXED   0

Referenced by vtkEMSegmentLogic::ConvertGUIEnumToAlgorithmEnumStoppingConditionType(), vtkImageEMLocalSuperClass::CreateVariables(), vtkImageEMLocalSuperClass::SetStopEMTypeToFixed(), and vtkImageEMLocalSuperClass::SetStopMFATypeToFixed().

#define EMSEGMENT_STOP_LABELMAP   1

Referenced by vtkEMSegmentLogic::ConvertGUIEnumToAlgorithmEnumStoppingConditionType(), vtkImageEMLocalSuperClass::SetStopEMTypeToLabelmap(), and vtkImageEMLocalSuperClass::SetStopMFATypeToLabelmap().

#define EMSEGMENT_STOP_WEIGHTS   2

Referenced by vtkEMSegmentLogic::ConvertGUIEnumToAlgorithmEnumStoppingConditionType(), vtkImageEMLocalSuperClass::SetStopEMTypeToWeights(), and vtkImageEMLocalSuperClass::SetStopMFATypeToWeights().

---

Function Documentation

float EMLocalInterface_CalcDistanceMap	(	const float *	ShapeParameter,
		float **	PCAEigenVectorsPtr,
		float *	MeanShape,
		int	DimEigenVector,
		int	VoxelJump
	)			[inline]

float EMLocalInterface_CalcDistanceMap	(	const double *	ShapeParameter,
		float **	PCAEigenVectorsPtr,
		float *	MeanShape,
		int	DimEigenVector,
		int	VoxelJump
	)			[inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalInterface_DefineMultiThreadJump	(	int *	Start,
		int	BoundaryMaxX,
		int	BoundaryMaxY,
		int	DataIncY,
		int	DataIncZ
	)			[inline]

Referenced by EMLocalShapeCostFunction::InitializeCostFunction().

void EMLocalInterface_findCoordInTargetOfMatchingSourceCentreTarget	(	float *	invRot,
		float *	invTran,
		int	ccol,
		int	crow,
		int	cslice,
		float &	ocol,
		float &	orow,
		float &	oslice,
		float	Image_MidX,
		float	Image_MidY,
		float	Image_MidZ
	)			[inline]

Referenced by EMLocalRegistrationCostFunction::ComputeCostFunction(), EMLocalRegistrationCostFunction::CostFunction_Sum_WeightxProbability(), and EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalInterface_GetDefaultNumberOfThreads

(

int

DisableFlag

)

[inline]

References EMLOCALSEGMENTER_MAX_MULTI_THREAD, and result.

Referenced by EMLocalShapeCostFunction::EMLocalShapeCostFunction(), and EMLocalRegistrationCostFunction::MultiThreadDefine().

template<class T >

void EMLocalInterface_Interpolation	(	float	col,
		float	row,
		float	slice,
		int	ncol,
		int	nrow,
		int	nslice,
		T *	data,
		int	dataIncY,
		int	dataIncZ,
		int	InterpolationType,
		int *	Image_Length,
		double &	result
	)			[inline]

References EMLocalInterface_Interpolation().

template<class T >

double EMLocalInterface_Interpolation	(	float	col,
		float	row,
		float	slice,
		int	ncol,
		int	nrow,
		int	nslice,
		T *	data,
		int	dataIncY,
		int	dataIncZ,
		int	InterpolationType,
		int *	Image_Length
	)			[inline]

References double(), EMLocalInterface_InterpolationNearestNeighbourVoxelIndex(), EMSEGMENT_REGISTRATION_INTERPOLATION_NEIGHBOUR, j, k, and NodeSelector::t.

Referenced by EMLocalRegistrationCostFunction::CostFunction_Sum_WeightxProbability(), and EMLocalInterface_Interpolation().

int EMLocalInterface_InterpolationNearestNeighbourVoxelIndex	(	float	col,
		float	row,
		float	slice,
		int	dataIncY,
		int	dataIncZ,
		int *	Image_Length
	)			[inline]

References j, and k.

Referenced by EMLocalInterface_Interpolation(), and EMLocalShapeCostFunction_CalculateCostFunction().