GenericTransformImage.h File Reference

#include "BRAINSCommonLibWin32Header.h"
#include <iostream>
#include "itkImage.h"
#include "itkCastImageFilter.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkWarpImageFilter.h"
#include "itkLinearInterpolateImageFunction.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itkBSplineInterpolateImageFunction.h"
#include "itkWindowedSincInterpolateImageFunction.h"
#include "itkBinaryThresholdImageFilter.h"
#include "itkSignedMaurerDistanceMapImageFilter.h"
#include "itkStatisticsImageFilter.h"
#include "itkScaleVersor3DTransform.h"
#include "itkScaleSkewVersor3DTransform.h"
#include "itkAffineTransform.h"
#include <itkBSplineDeformableTransform.h>
#include <itkThinPlateR2LogRSplineKernelTransform.h>
#include "itkVersorRigid3DTransform.h"
#include "ConvertToRigidAffine.h"
#include "itkResampleImageFilter.h"
#include "itkImageDuplicator.h"
#include "Imgmath.h"
#include "itkTransformFactory.h"
#include "itkTransformFileReader.h"
#include "itkTransformFileWriter.h"
#include "GenericTransformImage.txx"

Go to the source code of this file.

Namespaces
namespace	GenericTransformImageNS
namespace	itk
	STL includes.
Typedefs
typedef itk::AffineTransform < double, 3 >	AffineTransformType
typedef itk::BSplineDeformableTransform < CoordinateRepType, GenericTransformImageNS::SpaceDimension, GenericTransformImageNS::SplineOrder >	BSplineTransformType
typedef double	CoordinateRepType
typedef itk::Transform< double, 3, 3 >	GenericTransformType
typedef itk::ScaleSkewVersor3DTransform < double >	ScaleSkewVersor3DTransformType
typedef itk::ScaleVersor3DTransform < double >	ScaleVersor3DTransformType
typedef itk::ThinPlateR2LogRSplineKernelTransform < double, 3 >	ThinPlateSpline3DTransformType
typedef itk::TransformFileReader::TransformListType	TransformListType
typedef itk::TransformFileReader	TransformReaderType
typedef itk::VersorRigid3DTransform < double >	VersorRigid3DTransformType
Functions
void	itk::AddExtraTransformRegister (void)
VersorRigid3DTransformType::Pointer	itk::ComputeRigidTransformFromGeneric (const GenericTransformType::ConstPointer genericTransformToWrite)
	A utility function to write ITK compliant transforms to disk in a way that is compliant with the ReadTransformFromDisk.
template<typename InputImageType , class OutputImageType , typename DeformationImageType >
OutputImageType::Pointer	GenericTransformImage (InputImageType const *const OperandImage, const itk::ImageBase< InputImageType::ImageDimension > *ReferenceImage, typename DeformationImageType::Pointer DeformationField, typename GenericTransformType::Pointer genericTransform, typename InputImageType::PixelType suggestedDefaultValue, const std::string interpolationMode, const bool binaryFlag)
	A class to transform images. Only one of genericTransform or DeformationField can be non-null.
GenericTransformType::Pointer	itk::ReadTransformFromDisk (const std::string initialTransform)
	A utility function to read ITK compliant transforms to disk in a way that is compliant with the WriteTransformFromDisk.
template<class IOImageType >
IOImageType::Pointer	itk::SetRigidTransformInPlace (typename VersorRigid3DTransformType::ConstPointer RigidTransform, const IOImageType *InputImage)
	This templated function will duplicate the input image, change the direction and origin to refelect the physical space tranform that would be equivalent to calling the resample image filter. InplaceImage=SetRigidTransformInPlace(RigidTransform,InputImage); ResampleImage(InplaceImage,Identity); should produce the same result as ResampleImage(InputImage,RigidTransform);.
template<class InputImageType , class OutputImageType >
OutputImageType::Pointer	TransformResample (InputImageType const *const inputImage, const itk::ImageBase< InputImageType::ImageDimension > *ReferenceImage, typename InputImageType::PixelType defaultValue, typename itk::InterpolateImageFunction< InputImageType, typename itk::NumericTraits< typename InputImageType::PixelType >::RealType >::Pointer interp, typename GenericTransformType::Pointer transform)
	A class to transform images.
template<class InputImageType , class OutputImageType , class DeformationImageType >
OutputImageType::Pointer	TransformWarp (InputImageType const *const inputImage, const itk::ImageBase< InputImageType::ImageDimension > *ReferenceImage, typename InputImageType::PixelType defaultValue, typename itk::InterpolateImageFunction< InputImageType, typename itk::NumericTraits< typename InputImageType::PixelType >::RealType >::Pointer interp, typename DeformationImageType::Pointer deformationField)
	A class to transform images.
int	itk::WriteBothTransformsToDisk (const GenericTransformType::ConstPointer genericTransformToWrite, const std::string &outputTransform, const std::string &strippedOutputTransform)
	Special purpose convenience function -- should not have a public interface.
int	itk::WriteStrippedRigidTransformToDisk (const GenericTransformType::ConstPointer genericTransformToWrite, const std::string &strippedOutputTransform)
	Special purpose convenience function -- should not have a public interface.
void	itk::WriteTransformToDisk (GenericTransformType const *const genericTransformToWrite, const std::string outputTransform)
	A utility function to write ITK compliant transforms to disk in a way that is compliant with the ReadTransformFromDisk.
Variables
static const unsigned int	GenericTransformImageNS::SpaceDimension = 3
static const unsigned int	GenericTransformImageNS::SplineOrder = 3

---

Typedef Documentation

typedef itk::AffineTransform< double, 3 > AffineTransformType

typedef itk::BSplineDeformableTransform< CoordinateRepType, GenericTransformImageNS::SpaceDimension, GenericTransformImageNS::SplineOrder > BSplineTransformType

typedef double CoordinateRepType

typedef itk::Transform< double, 3, 3 > GenericTransformType

typedef itk::ScaleSkewVersor3DTransform< double > ScaleSkewVersor3DTransformType

typedef itk::ScaleVersor3DTransform< double > ScaleVersor3DTransformType

typedef itk::ThinPlateR2LogRSplineKernelTransform< double, 3 > ThinPlateSpline3DTransformType

typedef itk::TransformFileReader::TransformListType TransformListType

typedef itk::TransformFileReader TransformReaderType

typedef itk::VersorRigid3DTransform< double > VersorRigid3DTransformType

---

Function Documentation

template<typename InputImageType , class OutputImageType , typename DeformationImageType >

OutputImageType::Pointer GenericTransformImage	(	InputImageType const *const	OperandImage,
		const itk::ImageBase< InputImageType::ImageDimension > *	ReferenceImage,
		typename DeformationImageType::Pointer	DeformationField,
		typename GenericTransformType::Pointer	genericTransform,
		typename InputImageType::PixelType	suggestedDefaultValue,
		const std::string	interpolationMode,
		const bool	binaryFlag
	)			[inline]

A class to transform images. Only one of genericTransform or DeformationField can be non-null.

Author:

Hans J. Johnson

template<class InputImageType , class OutputImageType >

OutputImageType::Pointer TransformResample	(	InputImageType const *const	inputImage,
		const itk::ImageBase< InputImageType::ImageDimension > *	ReferenceImage,
		typename InputImageType::PixelType	defaultValue,
		typename itk::InterpolateImageFunction< InputImageType, typename itk::NumericTraits< typename InputImageType::PixelType >::RealType >::Pointer	interp,
		typename GenericTransformType::Pointer	transform
	)			[inline]

A class to transform images.

Author:

Hans J. Johnson

template<class InputImageType , class OutputImageType , class DeformationImageType >

OutputImageType::Pointer TransformWarp	(	InputImageType const *const	inputImage,
		const itk::ImageBase< InputImageType::ImageDimension > *	ReferenceImage,
		typename InputImageType::PixelType	defaultValue,
		typename itk::InterpolateImageFunction< InputImageType, typename itk::NumericTraits< typename InputImageType::PixelType >::RealType >::Pointer	interp,
		typename DeformationImageType::Pointer	deformationField
	)			[inline]

A class to transform images.

Author:

Hans J. Johnson