EMLocalRegistrationCostFunction Class Reference

#include <EMLocalRegistrationCostFunction.h>

List of all members.

Public Member Functions

void ClassInvCovariance_Define (classType *ClassListType, void **ClassList)
void ClassInvCovariance_Delete ()
void ClassInvCovariance_Print ()
float ComputeCostFunction (const double *parameters) const
void CostFunction_Sum_WeightxProbability (int Real_VoxelStart[3], int Boundary_VoxelOffset, int ROI_NumVoxels, double &result)
void DebugOff ()
void DebugOn ()
void DefineRegistrationParametersForThreadedCostFunction (int ROI_MinX, int ROI_MinY, int ROI_MinZ, int ROI_MaxX, int ROI_MaxY, int ROI_MaxZ) const
 EMLocalRegistrationCostFunction ()
void FinalizeCostFunction (double *Parameters, int NumOfFunctionEvaluations)
int GetBoundary_LengthX ()
int GetBoundary_LengthXYZ ()
int GetBoundary_LengthY ()
int * GetBoundary_Max ()
int * GetBoundary_Min ()
int GetBoundary_NumberOfROIVoxels ()
int GetBoundary_OffsetY ()
int GetBoundary_OffsetZ ()
unsigned char * GetBoundary_ROIVector ()
double ** GetClassInvCovariance ()
int * GetClassSpecificRegistrationFlag ()
int GetDebug ()
int GetGenerateBackgroundProbability ()
int * GetImage_Length ()
float GetImage_MidX ()
float GetImage_MidY ()
float GetImage_MidZ ()
int * GetIndependentSubClassFlag ()
int GetInterpolationType ()
double GetMinCost () const
double GetMinGaussianCost ()
double GetMinWeightAtlasCost ()
EMLocalRegistrationCostFunction_MultiThreadedParameters * GetMultiThreadedParameters ()
int GetNumberOfParameterPerSet ()
int GetNumberOfParameterSets ()
int GetNumberOfThreads ()
int GetNumberOfTotalParameters ()
int GetNumberOfTrainingSamples ()
int * GetNumChildClasses ()
int GetNumClasses () const
int GetNumTotalTypeCLASS ()
int * GetProbDataIncY ()
int * GetProbDataIncZ ()
float * GetProbDataMinusWeight ()
void * GetProbDataPtr (int index)
void ** GetProbDataPtr ()
int GetProbDataType ()
float * GetProbDataWeight ()
int GetRegistrationType ()
int GetRigidFlag ()
int GetROI_MaxX ()
int GetROI_MaxY ()
int GetROI_MaxZ ()
int GetROI_MinX ()
int GetROI_MinY ()
int GetROI_MinZ ()
EMLocalRegistrationCostFunction_ROI * GetROI_ProbData ()
EMLocalRegistrationCostFunction_ROI * GetROI_Weight ()
double * GetSpatialCostFunction ()
vtkMultiThreader * GetThreader ()
int GetTwoDFlag ()
float ** Getweights ()
void InitializeCostFunction ()
void InitializeParameters ()
void MultiThreadDefine (int DisableFlag)
void MultiThreadDelete ()
void ResetMinCost ()
void ResetMinWeightAtlasCost ()
void SetBoundary (int MinX, int MinY, int MinZ, int MaxX, int MaxY, int MaxZ)
void SetBoundary_NumberOfROIVoxels (int init)
void SetBoundary_ROIVector (unsigned char *init)
void SetClassSpecificRegistrationFlag (int *init)
void SetDimensionOfParameter (int inNumberOfParameterSets, int inTwoDFlag, int inRigidFlag)
void SetEMHierarchyParameters (EMLocal_Hierarchical_Class_Parameters init)
void SetGenerateBackgroundProbability (int init)
void SetGlobalToAtlasRotationMatrix (float *init)
void SetGlobalToAtlasTranslationVector (float *init)
void SetImage_Length (int LengthX, int LengthY, int LengthZ)
void SetIndependentSubClassFlag (int *init)
void SetInterpolationType (int init)
void SetNumberOfParameterSets (int init)
void SetNumberOfTrainingSamples (int vtkNotUsed(init))
void SetProbDataPtr (void **init)
void SetRegistrationType (int init)
void SetROI_ProbData (EMLocalRegistrationCostFunction_ROI *init)
void SetROI_Weight (EMLocalRegistrationCostFunction_ROI *init)
void SetSuperClassToAtlasRotationMatrix (float *init)
void SetSuperClassToAtlasTranslationVector (float *init)
void Setweights (float **init)
void SpatialCostFunctionOff ()
void SpatialCostFunctionOn ()
 ~EMLocalRegistrationCostFunction ()

Private Member Functions

void ScaleRotationValues (double *FinalParameters)

Private Attributes

int Boundary_LengthX
int Boundary_LengthXYZ
int Boundary_LengthY
int Boundary_Max [3]
int Boundary_Min [3]
int Boundary_NumberOfROIVoxels
unsigned char * Boundary_ROIVector
double ** ClassInvCovariance
int * ClassSpecificRegistrationFlag
int Debug
EMLocal_Hierarchical_Class_Parameters EMHierarchyParameters
int GenerateBackgroundProbability
float * GlobalToAtlasRotationMatrix
float * GlobalToAtlasTranslationVector
int Image_Length [3]
float Image_MidX
float Image_MidY
float Image_MidZ
int * IndependentSubClassFlag
int InterpolationType
EMLocalRegistrationCostFunction_MultiThreadedParameters * MultiThreadedParameters
int NumberOfParameterPerSet
int NumberOfParameterSets
int NumberOfThreads
int NumberOfTrainingSamples
EMLocalRegistrationCostFunction_IterationSpecificVariables * ParaDepVar
void ** ProbDataPtr
int RegistrationType
int RigidFlag
EMLocalRegistrationCostFunction_ROI * ROI_ProbData
EMLocalRegistrationCostFunction_ROI * ROI_Weight
double * SpatialCostFunction
float * SuperClassToAtlasRotationMatrix
float * SuperClassToAtlasTranslationVector
vtkMultiThreader * Threader
int TwoDFlag
float ** weights

Constructor & Destructor Documentation

EMLocalRegistrationCostFunction::EMLocalRegistrationCostFunction (  )  [inline]
EMLocalRegistrationCostFunction::~EMLocalRegistrationCostFunction (  ) 

References ClassInvCovariance_Delete(), MultiThreadDelete(), ParaDepVar, and SpatialCostFunctionOff().

Member Function Documentation

void EMLocalRegistrationCostFunction::ClassInvCovariance_Define ( classType *  ClassListType,
void **  ClassList 
)

References CLASS, ClassInvCovariance, EMHierarchyParameters, GenerateBackgroundProbability, and EMLocal_Hierarchical_Class_Parameters::NumClasses.

void EMLocalRegistrationCostFunction::ClassInvCovariance_Delete (  ) 

References ClassInvCovariance, EMHierarchyParameters, GenerateBackgroundProbability, and EMLocal_Hierarchical_Class_Parameters::NumClasses.

Referenced by ~EMLocalRegistrationCostFunction().

void EMLocalRegistrationCostFunction::ClassInvCovariance_Print (  ) 

References ClassInvCovariance, EMHierarchyParameters, GenerateBackgroundProbability, j, and EMLocal_Hierarchical_Class_Parameters::NumClasses.

float EMLocalRegistrationCostFunction::ComputeCostFunction ( const double *  parameters  )  const

References Boundary_LengthXYZ, Boundary_NumberOfROIVoxels, ClassInvCovariance, ClassSpecificRegistrationFlag, EMLocalRegistrationCostFunction_IterationSpecificVariables::ClassToAtlasRotationMatrix, EMLocalRegistrationCostFunction_IterationSpecificVariables::ClassToAtlasTranslationVector, DefineRegistrationParametersForThreadedCostFunction(), double(), EMLocalInterface_findCoordInTargetOfMatchingSourceCentreTarget(), EMLOCALREGISTRATION_MAX_PENALITY, EMLocalRegistrationCostFunction_PrintVector(), EMREGISTRATION_MAX_SCALING, EMREGISTRATION_MIN_SCALING, EMSEGMENT_REGISTRATION_APPLY, EMSEGMENT_REGISTRATION_CLASS_ONLY, EMSEGMENT_REGISTRATION_GLOBAL_ONLY, EMSEGMENT_REGISTRATION_SIMULTANEOUS, exit, vtkSimonParameterReaderWriter::fast_invert_3x3_matrix(), GenerateBackgroundProbability, GetMinCost(), GetNumClasses(), GlobalToAtlasRotationMatrix, GlobalToAtlasTranslationVector, vtkSimonParameterReaderWriter::matmult_3x4(), EMLocalRegistrationCostFunction_ROI::MaxCoord, EMLocalRegistrationCostFunction_ROI::MinCoord, EMLocalRegistrationCostFunction_IterationSpecificVariables::MinGaussianCost, EMLocalRegistrationCostFunction_IterationSpecificVariables::MinWeightAtlasCost, MultiThreadedParameters, NumberOfParameterPerSet, NumberOfParameterSets, NumberOfThreads, ParaDepVar, RegistrationType, result, RigidFlag, ROI_ProbData, ROI_Weight, SpatialCostFunction, SuperClassToAtlasRotationMatrix, SuperClassToAtlasTranslationVector, Threader, vtkSimonParameterReaderWriter::TurnParameteresIntoInverseRotationTranslation(), and TwoDFlag.

void EMLocalRegistrationCostFunction::CostFunction_Sum_WeightxProbability ( int  Real_VoxelStart[3],
int  Boundary_VoxelOffset,
int  ROI_NumVoxels,
double &  result 
) [inline]

References EMLocalRegistrationCostFunction_IterationSpecificVariables::Boundary_OffsetY, EMLocalRegistrationCostFunction_IterationSpecificVariables::Boundary_OffsetZ, Boundary_ROIVector, EMLocalRegistrationCostFunction_IterationSpecificVariables::ClassToAtlasRotationMatrix, double(), EMLocalInterface_findCoordInTargetOfMatchingSourceCentreTarget(), EMLocalInterface_Interpolation(), EMSEGMENT_INCORRECT_MODEL, EMSEGMENT_REGISTRATION_GLOBAL_ONLY, GenerateBackgroundProbability, GetNumChildClasses(), GetNumClasses(), GetNumTotalTypeCLASS(), GetProbDataIncY(), GetProbDataIncZ(), GetProbDataMinusWeight(), GetProbDataType(), GetProbDataWeight(), if(), Image_Length, IndependentSubClassFlag, EMLocalRegistrationCostFunction_ROI::MAP, NumberOfTrainingSamples, ParaDepVar, ProbDataPtr, RegistrationType, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxX, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxY, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxZ, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinX, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinY, ROI_ProbData, ROI_Weight, SpatialCostFunction, vtkNotUsed(), and weights.

void EMLocalRegistrationCostFunction::DebugOff (  )  [inline]
void EMLocalRegistrationCostFunction::DebugOn (  )  [inline]
void EMLocalRegistrationCostFunction::DefineRegistrationParametersForThreadedCostFunction ( int  ROI_MinX,
int  ROI_MinY,
int  ROI_MinZ,
int  ROI_MaxX,
int  ROI_MaxY,
int  ROI_MaxZ 
) const

References Boundary_LengthX, Boundary_LengthY, Boundary_Max, Boundary_Min, EMLocalRegistrationCostFunction_IterationSpecificVariables::Boundary_OffsetY, EMLocalRegistrationCostFunction_IterationSpecificVariables::Boundary_OffsetZ, EMLocalRegistrationCostFunction_MultiThreadedParameters::Boundary_VoxelOffset, Image_Length, MultiThreadedParameters, NumberOfThreads, ParaDepVar, EMLocalRegistrationCostFunction_MultiThreadedParameters::Real_VoxelStart, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxX, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxY, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxZ, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinX, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinY, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinZ, EMLocalRegistrationCostFunction_MultiThreadedParameters::ROI_NumVoxels, and vtkNotUsed().

Referenced by ComputeCostFunction().

void EMLocalRegistrationCostFunction::FinalizeCostFunction ( double *  Parameters,
int  NumOfFunctionEvaluations 
)

References EMLocalRegistrationCostFunction_PrintVector(), EMSEGMENT_REGISTRATION_CLASS_ONLY, EMSEGMENT_REGISTRATION_GLOBAL_ONLY, GetMinCost(), GetMinGaussianCost(), GetMinWeightAtlasCost(), NumberOfParameterPerSet, NumberOfParameterSets, RegistrationType, and ScaleRotationValues().

Referenced by itkEMLocalOptimization_Registration_Start().

int EMLocalRegistrationCostFunction::GetBoundary_LengthX (  )  [inline]
int EMLocalRegistrationCostFunction::GetBoundary_LengthXYZ (  )  [inline]
int EMLocalRegistrationCostFunction::GetBoundary_LengthY (  )  [inline]
int* EMLocalRegistrationCostFunction::GetBoundary_Max (  )  [inline]
int* EMLocalRegistrationCostFunction::GetBoundary_Min (  )  [inline]
int EMLocalRegistrationCostFunction::GetBoundary_NumberOfROIVoxels (  )  [inline]
int EMLocalRegistrationCostFunction::GetBoundary_OffsetY (  )  [inline]
int EMLocalRegistrationCostFunction::GetBoundary_OffsetZ (  )  [inline]
unsigned char* EMLocalRegistrationCostFunction::GetBoundary_ROIVector (  )  [inline]
double** EMLocalRegistrationCostFunction::GetClassInvCovariance (  )  [inline]
int* EMLocalRegistrationCostFunction::GetClassSpecificRegistrationFlag (  )  [inline]
int EMLocalRegistrationCostFunction::GetDebug (  )  [inline]
int EMLocalRegistrationCostFunction::GetGenerateBackgroundProbability (  )  [inline]
int* EMLocalRegistrationCostFunction::GetImage_Length (  )  [inline]
float EMLocalRegistrationCostFunction::GetImage_MidX (  )  [inline]
float EMLocalRegistrationCostFunction::GetImage_MidY (  )  [inline]
float EMLocalRegistrationCostFunction::GetImage_MidZ (  )  [inline]
int* EMLocalRegistrationCostFunction::GetIndependentSubClassFlag (  )  [inline]
int EMLocalRegistrationCostFunction::GetInterpolationType (  )  [inline]
double EMLocalRegistrationCostFunction::GetMinCost (  )  const [inline]

Referenced by ComputeCostFunction(), and FinalizeCostFunction().

double EMLocalRegistrationCostFunction::GetMinGaussianCost (  )  [inline]

Referenced by FinalizeCostFunction().

double EMLocalRegistrationCostFunction::GetMinWeightAtlasCost (  )  [inline]

Referenced by FinalizeCostFunction().

EMLocalRegistrationCostFunction_MultiThreadedParameters* EMLocalRegistrationCostFunction::GetMultiThreadedParameters (  )  [inline]
int EMLocalRegistrationCostFunction::GetNumberOfParameterPerSet (  )  [inline]
int EMLocalRegistrationCostFunction::GetNumberOfParameterSets (  )  [inline]
int EMLocalRegistrationCostFunction::GetNumberOfThreads (  )  [inline]
int EMLocalRegistrationCostFunction::GetNumberOfTotalParameters (  )  [inline]
int EMLocalRegistrationCostFunction::GetNumberOfTrainingSamples (  )  [inline]
int* EMLocalRegistrationCostFunction::GetNumChildClasses (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

int EMLocalRegistrationCostFunction::GetNumClasses (  )  const [inline]

Referenced by ComputeCostFunction(), and CostFunction_Sum_WeightxProbability().

int EMLocalRegistrationCostFunction::GetNumTotalTypeCLASS (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

int* EMLocalRegistrationCostFunction::GetProbDataIncY (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

int* EMLocalRegistrationCostFunction::GetProbDataIncZ (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

float* EMLocalRegistrationCostFunction::GetProbDataMinusWeight (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

void* EMLocalRegistrationCostFunction::GetProbDataPtr ( int  index  )  [inline]
void** EMLocalRegistrationCostFunction::GetProbDataPtr (  )  [inline]
int EMLocalRegistrationCostFunction::GetProbDataType (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

float* EMLocalRegistrationCostFunction::GetProbDataWeight (  )  [inline]

Referenced by CostFunction_Sum_WeightxProbability().

int EMLocalRegistrationCostFunction::GetRegistrationType ( void   )  [inline]
int EMLocalRegistrationCostFunction::GetRigidFlag (  )  [inline]
int EMLocalRegistrationCostFunction::GetROI_MaxX (  )  [inline]
int EMLocalRegistrationCostFunction::GetROI_MaxY (  )  [inline]
int EMLocalRegistrationCostFunction::GetROI_MaxZ (  )  [inline]
int EMLocalRegistrationCostFunction::GetROI_MinX (  )  [inline]
int EMLocalRegistrationCostFunction::GetROI_MinY (  )  [inline]
int EMLocalRegistrationCostFunction::GetROI_MinZ (  )  [inline]
EMLocalRegistrationCostFunction_ROI* EMLocalRegistrationCostFunction::GetROI_ProbData (  )  [inline]
EMLocalRegistrationCostFunction_ROI* EMLocalRegistrationCostFunction::GetROI_Weight (  )  [inline]
double* EMLocalRegistrationCostFunction::GetSpatialCostFunction (  )  [inline]
vtkMultiThreader* EMLocalRegistrationCostFunction::GetThreader (  )  [inline]
int EMLocalRegistrationCostFunction::GetTwoDFlag (  )  [inline]
float** EMLocalRegistrationCostFunction::Getweights (  )  [inline]
void EMLocalRegistrationCostFunction::InitializeCostFunction (  ) 

References Boundary_Min, EMSEGMENT_REGISTRATION_CLASS_ONLY, EMSEGMENT_REGISTRATION_GLOBAL_ONLY, EMSEGMENT_REGISTRATION_SIMULTANEOUS, EMLocalRegistrationCostFunction_ROI::MaxCoord, EMLocalRegistrationCostFunction_ROI::MinCoord, RegistrationType, ResetMinCost(), and ROI_Weight.

Referenced by itkEMLocalOptimization_Registration_Start().

void EMLocalRegistrationCostFunction::InitializeParameters (  ) 

References Boundary_LengthX, Boundary_LengthXYZ, Boundary_LengthY, Boundary_Max, Boundary_Min, Boundary_NumberOfROIVoxels, EMLocalRegistrationCostFunction_IterationSpecificVariables::Boundary_OffsetY, EMLocalRegistrationCostFunction_IterationSpecificVariables::Boundary_OffsetZ, Boundary_ROIVector, ClassInvCovariance, ClassSpecificRegistrationFlag, EMLocalRegistrationCostFunction_IterationSpecificVariables::ClassToAtlasRotationMatrix, EMLocalRegistrationCostFunction_IterationSpecificVariables::ClassToAtlasTranslationVector, Debug, EMSEGMENT_REGISTRATION_DISABLED, GenerateBackgroundProbability, GlobalToAtlasRotationMatrix, GlobalToAtlasTranslationVector, Image_Length, Image_MidX, Image_MidY, Image_MidZ, IndependentSubClassFlag, EMLocalRegistrationCostFunction_IterationSpecificVariables::MinGaussianCost, EMLocalRegistrationCostFunction_IterationSpecificVariables::MinWeightAtlasCost, MultiThreadedParameters, NumberOfParameterPerSet, NumberOfParameterSets, NumberOfThreads, NumberOfTrainingSamples, ParaDepVar, ProbDataPtr, RegistrationType, RigidFlag, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxX, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxY, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MaxZ, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinX, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinY, EMLocalRegistrationCostFunction_IterationSpecificVariables::ROI_MinZ, ROI_ProbData, ROI_Weight, SpatialCostFunction, SuperClassToAtlasRotationMatrix, SuperClassToAtlasTranslationVector, Threader, TwoDFlag, and weights.

void EMLocalRegistrationCostFunction::MultiThreadDefine ( int  DisableFlag  ) 

References EMLocalInterface_GetDefaultNumberOfThreads(), EMLocalRegistrationCostFunction_CostFunction_Sum_WeightxProbability_Thread(), MultiThreadDelete(), MultiThreadedParameters, NumberOfThreads, and Threader.

void EMLocalRegistrationCostFunction::MultiThreadDelete (  ) 

References MultiThreadedParameters, NumberOfThreads, and Threader.

Referenced by MultiThreadDefine(), and ~EMLocalRegistrationCostFunction().

void EMLocalRegistrationCostFunction::ResetMinCost (  )  [inline]

Referenced by InitializeCostFunction().

void EMLocalRegistrationCostFunction::ResetMinWeightAtlasCost (  )  [inline]

References EMLOCALREGISTRATION_MAX_PENALITY.

void EMLocalRegistrationCostFunction::ScaleRotationValues ( double *  FinalParameters  )  [private]

References j, NumberOfParameterPerSet, NumberOfParameterSets, and TwoDFlag.

Referenced by FinalizeCostFunction().

void EMLocalRegistrationCostFunction::SetBoundary ( int  MinX,
int  MinY,
int  MinZ,
int  MaxX,
int  MaxY,
int  MaxZ 
)

References Boundary_LengthX, Boundary_LengthXYZ, Boundary_LengthY, Boundary_Max, and Boundary_Min.

void EMLocalRegistrationCostFunction::SetBoundary_NumberOfROIVoxels ( int  init  )  [inline]
void EMLocalRegistrationCostFunction::SetBoundary_ROIVector ( unsigned char *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetClassSpecificRegistrationFlag ( int *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetDimensionOfParameter ( int  inNumberOfParameterSets,
int  inTwoDFlag,
int  inRigidFlag 
)

References NumberOfParameterPerSet, NumberOfParameterSets, RigidFlag, and TwoDFlag.

void EMLocalRegistrationCostFunction::SetEMHierarchyParameters ( EMLocal_Hierarchical_Class_Parameters  init  )  [inline]
void EMLocalRegistrationCostFunction::SetGenerateBackgroundProbability ( int  init  )  [inline]
void EMLocalRegistrationCostFunction::SetGlobalToAtlasRotationMatrix ( float *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetGlobalToAtlasTranslationVector ( float *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetImage_Length ( int  LengthX,
int  LengthY,
int  LengthZ 
)

References Image_Length, Image_MidX, Image_MidY, and Image_MidZ.

void EMLocalRegistrationCostFunction::SetIndependentSubClassFlag ( int *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetInterpolationType ( int  init  )  [inline]
void EMLocalRegistrationCostFunction::SetNumberOfParameterSets ( int  init  )  [inline]
void EMLocalRegistrationCostFunction::SetNumberOfTrainingSamples ( int   vtkNotUsedinit  )  [inline]
void EMLocalRegistrationCostFunction::SetProbDataPtr ( void **  init  )  [inline]
void EMLocalRegistrationCostFunction::SetRegistrationType ( int  init  )  [inline]
void EMLocalRegistrationCostFunction::SetROI_ProbData ( EMLocalRegistrationCostFunction_ROI *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetROI_Weight ( EMLocalRegistrationCostFunction_ROI *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetSuperClassToAtlasRotationMatrix ( float *  init  )  [inline]
void EMLocalRegistrationCostFunction::SetSuperClassToAtlasTranslationVector ( float *  init  )  [inline]
void EMLocalRegistrationCostFunction::Setweights ( float **  init  )  [inline]
void EMLocalRegistrationCostFunction::SpatialCostFunctionOff (  ) 

References SpatialCostFunction.

Referenced by ~EMLocalRegistrationCostFunction().

void EMLocalRegistrationCostFunction::SpatialCostFunctionOn (  ) 

References Boundary_LengthXYZ, and SpatialCostFunction.

Member Data Documentation

int EMLocalRegistrationCostFunction::Boundary_LengthX [private]

Referenced by DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), and SetBoundary().

int EMLocalRegistrationCostFunction::Boundary_LengthXYZ [private]

Referenced by ComputeCostFunction(), InitializeParameters(), SetBoundary(), and SpatialCostFunctionOn().

int EMLocalRegistrationCostFunction::Boundary_LengthY [private]

Referenced by DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), and SetBoundary().

int EMLocalRegistrationCostFunction::Boundary_Max[3] [private]

Referenced by DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), and SetBoundary().

int EMLocalRegistrationCostFunction::Boundary_Min[3] [private]

Referenced by DefineRegistrationParametersForThreadedCostFunction(), InitializeCostFunction(), InitializeParameters(), and SetBoundary().

int EMLocalRegistrationCostFunction::Boundary_NumberOfROIVoxels [private]

Referenced by ComputeCostFunction(), and InitializeParameters().

unsigned char* EMLocalRegistrationCostFunction::Boundary_ROIVector [private]

Referenced by CostFunction_Sum_WeightxProbability(), and InitializeParameters().

double** EMLocalRegistrationCostFunction::ClassInvCovariance [private]

Referenced by ClassInvCovariance_Define(), ClassInvCovariance_Delete(), ClassInvCovariance_Print(), ComputeCostFunction(), and InitializeParameters().

int* EMLocalRegistrationCostFunction::ClassSpecificRegistrationFlag [private]

Referenced by ComputeCostFunction(), and InitializeParameters().

int EMLocalRegistrationCostFunction::Debug [private]

Referenced by InitializeParameters().

EMLocal_Hierarchical_Class_Parameters EMLocalRegistrationCostFunction::EMHierarchyParameters [private]

Referenced by ClassInvCovariance_Define(), ClassInvCovariance_Delete(), and ClassInvCovariance_Print().

int EMLocalRegistrationCostFunction::GenerateBackgroundProbability [private]

Referenced by ClassInvCovariance_Define(), ClassInvCovariance_Delete(), ClassInvCovariance_Print(), ComputeCostFunction(), CostFunction_Sum_WeightxProbability(), and InitializeParameters().

float* EMLocalRegistrationCostFunction::GlobalToAtlasRotationMatrix [private]

Referenced by ComputeCostFunction(), and InitializeParameters().

float* EMLocalRegistrationCostFunction::GlobalToAtlasTranslationVector [private]

Referenced by ComputeCostFunction(), and InitializeParameters().

int EMLocalRegistrationCostFunction::Image_Length[3] [private]

Referenced by CostFunction_Sum_WeightxProbability(), DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), and SetImage_Length().

float EMLocalRegistrationCostFunction::Image_MidX [private]

Referenced by InitializeParameters(), and SetImage_Length().

float EMLocalRegistrationCostFunction::Image_MidY [private]

Referenced by InitializeParameters(), and SetImage_Length().

float EMLocalRegistrationCostFunction::Image_MidZ [private]

Referenced by InitializeParameters(), and SetImage_Length().

int* EMLocalRegistrationCostFunction::IndependentSubClassFlag [private]

Referenced by CostFunction_Sum_WeightxProbability(), and InitializeParameters().

int EMLocalRegistrationCostFunction::InterpolationType [private]
EMLocalRegistrationCostFunction_MultiThreadedParameters* EMLocalRegistrationCostFunction::MultiThreadedParameters [private]

Referenced by ComputeCostFunction(), DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), MultiThreadDefine(), and MultiThreadDelete().

int EMLocalRegistrationCostFunction::NumberOfParameterPerSet [private]

Referenced by ComputeCostFunction(), FinalizeCostFunction(), InitializeParameters(), ScaleRotationValues(), and SetDimensionOfParameter().

int EMLocalRegistrationCostFunction::NumberOfParameterSets [private]

Referenced by ComputeCostFunction(), FinalizeCostFunction(), InitializeParameters(), ScaleRotationValues(), and SetDimensionOfParameter().

int EMLocalRegistrationCostFunction::NumberOfThreads [private]

Referenced by ComputeCostFunction(), DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), MultiThreadDefine(), and MultiThreadDelete().

int EMLocalRegistrationCostFunction::NumberOfTrainingSamples [private]

Referenced by CostFunction_Sum_WeightxProbability(), and InitializeParameters().

EMLocalRegistrationCostFunction_IterationSpecificVariables* EMLocalRegistrationCostFunction::ParaDepVar [private]

Referenced by ComputeCostFunction(), CostFunction_Sum_WeightxProbability(), DefineRegistrationParametersForThreadedCostFunction(), InitializeParameters(), and ~EMLocalRegistrationCostFunction().

void** EMLocalRegistrationCostFunction::ProbDataPtr [private]

Referenced by CostFunction_Sum_WeightxProbability(), and InitializeParameters().

int EMLocalRegistrationCostFunction::RegistrationType [private]

Referenced by ComputeCostFunction(), CostFunction_Sum_WeightxProbability(), FinalizeCostFunction(), InitializeCostFunction(), and InitializeParameters().

int EMLocalRegistrationCostFunction::RigidFlag [private]

Referenced by ComputeCostFunction(), InitializeParameters(), and SetDimensionOfParameter().

EMLocalRegistrationCostFunction_ROI* EMLocalRegistrationCostFunction::ROI_ProbData [private]

Referenced by ComputeCostFunction(), CostFunction_Sum_WeightxProbability(), and InitializeParameters().

EMLocalRegistrationCostFunction_ROI* EMLocalRegistrationCostFunction::ROI_Weight [private]

Referenced by ComputeCostFunction(), CostFunction_Sum_WeightxProbability(), InitializeCostFunction(), and InitializeParameters().

double* EMLocalRegistrationCostFunction::SpatialCostFunction [private]

Referenced by ComputeCostFunction(), CostFunction_Sum_WeightxProbability(), InitializeParameters(), SpatialCostFunctionOff(), and SpatialCostFunctionOn().

float* EMLocalRegistrationCostFunction::SuperClassToAtlasRotationMatrix [private]

Referenced by ComputeCostFunction(), and InitializeParameters().

float* EMLocalRegistrationCostFunction::SuperClassToAtlasTranslationVector [private]

Referenced by ComputeCostFunction(), and InitializeParameters().

vtkMultiThreader* EMLocalRegistrationCostFunction::Threader [private]

Referenced by ComputeCostFunction(), InitializeParameters(), MultiThreadDefine(), and MultiThreadDelete().

int EMLocalRegistrationCostFunction::TwoDFlag [private]

Referenced by ComputeCostFunction(), InitializeParameters(), ScaleRotationValues(), and SetDimensionOfParameter().

float** EMLocalRegistrationCostFunction::weights [private]

Referenced by CostFunction_Sum_WeightxProbability(), and InitializeParameters().

The documentation for this class was generated from the following files:
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