EMLocalShapeCostFunction Class Reference

#include <EMLocalShapeCostFunction.h>

List of all members.

Public Member Functions

float ComputeCostFunction (const double *initPCAPara) const
 EMLocalShapeCostFunction (EMLocal_Hierarchical_Class_Parameters *initEMHierarchyParameters, int *initPCANumberOfEigenModes, int DisableMultiThreading)
int GetDataIncY ()
int GetDataIncZ ()
int GetDataJump ()
float GetGaussianPenalty ()
int * GetImage_Length ()
float GetImage_MidX ()
float GetImage_MidY ()
float GetImage_MidZ ()
float GetImagePenalty ()
char * GetIncludeSpatialPriorForNormalization ()
EMLocalShapeCostFunction_MultiThreadedParameters * GetMultiThreadedParameters ()
int GetNumberOfTotalTypeCLASS ()
int * GetNumChildClasses ()
int GetNumClasses ()
int GetNumOfThreads ()
int ** GetPCAEigenVectorsIncY ()
int ** GetPCAEigenVectorsIncZ ()
float * GetPCAEigenVectorsPtr (int id, int index)
int * GetPCAMeanShapeIncY ()
int * GetPCAMeanShapeIncZ ()
float * GetPCAMeanShapePtr (int index)
int * GetPCANumberOfEigenModes ()
int GetPCANumberOfEigenModes (int index)
const double * GetPCAPara ()
int GetPCATotalNumOfShapeParameters ()
int * GetProbDataIncY ()
int * GetProbDataIncZ ()
float * GetProbDataMinusWeight ()
void ** GetProbDataPtr ()
int GetProbDataType ()
float * GetProbDataWeight ()
int GetRegistrationType ()
unsigned char * GetROI ()
int GetROI_LengthX ()
int GetROI_LengthY ()
int GetROI_LengthZ ()
int GetROI_MaxX ()
int GetROI_MaxY ()
int GetROI_MaxZ ()
int GetROI_MinX ()
int GetROI_MinY ()
int GetROI_MinZ ()
int GetROIIncY ()
int GetROIIncZ ()
float * GetSpatialCostFunction ()
float * Getweights (int index)
int GetweightsIncY ()
int GetweightsIncZ ()
void InitializeCostFunction (int PCAMaxX, int PCAMinX, int PCAMaxY, int PCAMinY, int PCAMaxZ, int PCAMinZ, int BoundaryMinX, int BoundaryMinY, int BoundaryMinZ, int Boundary_LengthX, int Boundary_LengthY, float **w_m, unsigned char *PCA_ROI, void **initProbDataPtr, float **initPCAMeanShapePtr, int *initPCAMeanShapeIncY, int *initPCAMeanShapeIncZ, float ***initPCAEigenVectorsPtr, int **initPCAEigenVectorsIncY, int **initPCAEigenVectorsIncZ)
void InitRegSpecPara (int RegistrationType, int LengthX, int LengthY, int LengthZ)
void ROI_Unassign ()
void SetNumberOfVoxelsInImage (int init)
void SetProbDataPtr (void *init, int i)
void SetROIExactVoxelCount (int *init)
void SpatialCostFunctionOff ()
void SpatialCostFunctionOn ()
double Transfere_DistanceMap_Into_SpatialPrior (double distance, float variance, float boundary, float Min, float Max)
void TransfereArrayIntoPCAShapeParameters (float *PCAParameters, float **PCAShapeParameters)
void TransferePCAShapeParametersIntoArray (float **PCAShapeParameters, float *PCAParameters)
 ~EMLocalShapeCostFunction ()

Public Attributes

float ** ClassToAtlasRotationMatrix
float ** ClassToAtlasTranslationVector
int NumberOfTrainingSamples
float ** PCAInverseEigenValues
float * PCALogisticBoundary
float * PCALogisticMax
float * PCALogisticMin
float * PCALogisticSlope
int PCAShapeModelType
float PCASpatialPriorVariance
int PCATotalNumOfShapeParameters

Private Member Functions

void DefinePCADataPtr (int inPCAMinX, int inPCAMinY, int inPCAMinZ, int inBoundaryMaxX, int inBoundaryMaxY, int inDataIncY, int inDataIncZ, int &outJump, int &outDataIncY, int &outDataIncZ)

Private Attributes

int DataIncY
int DataIncZ
int DataJump
EMLocal_Hierarchical_Class_Parameters * EMHierarchyParameters
int Image_Length [3]
float Image_MidX
float Image_MidY
float Image_MidZ
char * IncludeSpatialPriorForNormalization
EMLocalShapeCostFunction_MultiThreadedParameters * MultiThreadedParameters
int NumberOfTotalTypeCLASS
int NumberOfVoxelsInImage
int NumOfThreads
EMLocalShapeCostFunction_IterationSpecificVariables * ParaDepVar
int ** PCAEigenVectorsIncY
int ** PCAEigenVectorsIncZ
float *** PCAEigenVectorsPtr
int * PCAMeanShapeIncY
int * PCAMeanShapeIncZ
float ** PCAMeanShapePtr
int * PCANumberOfEigenModes
int * ProbDataIncY
int * ProbDataIncZ
void ** ProbDataPtr
int RegistrationType
unsigned char * ROI
int ROI_LengthX
int ROI_LengthY
int ROI_LengthZ
int ROI_MaxX
int ROI_MaxY
int ROI_MaxZ
int ROI_MinX
int ROI_MinY
int ROI_MinZ
int * ROIExactVoxelCount
int ROIIncY
int ROIIncZ
vtkMultiThreader * Threader
float ** weights
int weightsIncY
int weightsIncZ

Constructor & Destructor Documentation

EMLocalShapeCostFunction::EMLocalShapeCostFunction ( EMLocal_Hierarchical_Class_Parameters *  initEMHierarchyParameters,
int *  initPCANumberOfEigenModes,
int  DisableMultiThreading 
)

References ClassToAtlasRotationMatrix, ClassToAtlasTranslationVector, EMHierarchyParameters, EMLocalInterface_GetDefaultNumberOfThreads(), EMLocalShapeCostFunction_ShapeCostFunctionMultiThreaded_Function(), EMLocalShapeCostFunction_IterationSpecificVariables::GaussianPenalty, EMLocalShapeCostFunction_IterationSpecificVariables::ImagePenalty, IncludeSpatialPriorForNormalization, j, k, MultiThreadedParameters, NumberOfTotalTypeCLASS, NumberOfVoxelsInImage, NumOfThreads, EMLocal_Hierarchical_Class_Parameters::NumTotalTypeCLASS, ParaDepVar, PCAEigenVectorsIncY, PCAEigenVectorsIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::PCAEigenVectorsJump, PCAEigenVectorsPtr, PCAMeanShapeIncY, PCAMeanShapeIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::PCAMeanShapeJump, PCAMeanShapePtr, PCANumberOfEigenModes, EMLocalShapeCostFunction_IterationSpecificVariables::PCAPara, ProbDataIncY, ProbDataIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::ProbDataJump, ProbDataPtr, ROI, EMLocalShapeCostFunction_IterationSpecificVariables::SpatialCostFunction, Threader, and weights.

EMLocalShapeCostFunction::~EMLocalShapeCostFunction (  ) 

References IncludeSpatialPriorForNormalization, j, MultiThreadedParameters, NumberOfTotalTypeCLASS, NumOfThreads, ParaDepVar, PCAEigenVectorsIncY, PCAEigenVectorsIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::PCAEigenVectorsJump, PCAEigenVectorsPtr, PCAMeanShapeIncY, PCAMeanShapeIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::PCAMeanShapeJump, PCAMeanShapePtr, ProbDataIncY, ProbDataIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::ProbDataJump, ProbDataPtr, SpatialCostFunctionOff(), Threader, and weights.

Member Function Documentation

float EMLocalShapeCostFunction::ComputeCostFunction ( const double *  initPCAPara  )  const

References EMSEGMENT_PCASHAPE_DEPENDENT, EMLocalShapeCostFunction_IterationSpecificVariables::GaussianPenalty, EMLocalShapeCostFunction_IterationSpecificVariables::ImagePenalty, k, MultiThreadedParameters, NumberOfTotalTypeCLASS, NumOfThreads, ParaDepVar, PCAInverseEigenValues, PCANumberOfEigenModes, EMLocalShapeCostFunction_IterationSpecificVariables::PCAPara, PCAShapeModelType, EMLocalShapeCostFunction_MultiThreadedParameters::Result, result, ROIExactVoxelCount, EMLocalShapeCostFunction_IterationSpecificVariables::SpatialCostFunction, and Threader.

void EMLocalShapeCostFunction::DefinePCADataPtr ( int  inPCAMinX,
int  inPCAMinY,
int  inPCAMinZ,
int  inBoundaryMaxX,
int  inBoundaryMaxY,
int  inDataIncY,
int  inDataIncZ,
int &  outJump,
int &  outDataIncY,
int &  outDataIncZ 
) [private]

References ROI_LengthX, and ROI_LengthY.

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::GetDataIncY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetDataIncZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetDataJump (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float EMLocalShapeCostFunction::GetGaussianPenalty (  )  [inline]
int* EMLocalShapeCostFunction::GetImage_Length (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float EMLocalShapeCostFunction::GetImage_MidX (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float EMLocalShapeCostFunction::GetImage_MidY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float EMLocalShapeCostFunction::GetImage_MidZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float EMLocalShapeCostFunction::GetImagePenalty (  )  [inline]
char* EMLocalShapeCostFunction::GetIncludeSpatialPriorForNormalization (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

EMLocalShapeCostFunction_MultiThreadedParameters* EMLocalShapeCostFunction::GetMultiThreadedParameters (  )  [inline]

Referenced by EMLocalShapeCostFunction_ShapeCostFunctionMultiThreaded_Function().

int EMLocalShapeCostFunction::GetNumberOfTotalTypeCLASS (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int* EMLocalShapeCostFunction::GetNumChildClasses (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetNumClasses (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetNumOfThreads (  )  [inline]
int** EMLocalShapeCostFunction::GetPCAEigenVectorsIncY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int** EMLocalShapeCostFunction::GetPCAEigenVectorsIncZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::GetPCAEigenVectorsPtr ( int  id,
int  index 
) [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int* EMLocalShapeCostFunction::GetPCAMeanShapeIncY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int* EMLocalShapeCostFunction::GetPCAMeanShapeIncZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::GetPCAMeanShapePtr ( int  index  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int* EMLocalShapeCostFunction::GetPCANumberOfEigenModes (  )  [inline]
int EMLocalShapeCostFunction::GetPCANumberOfEigenModes ( int  index  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

const double* EMLocalShapeCostFunction::GetPCAPara (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetPCATotalNumOfShapeParameters (  )  [inline]
int* EMLocalShapeCostFunction::GetProbDataIncY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int* EMLocalShapeCostFunction::GetProbDataIncZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::GetProbDataMinusWeight (  )  [inline]
void** EMLocalShapeCostFunction::GetProbDataPtr (  )  [inline]

Referenced by EMLocalShapeCostFunction_ShapeCostFunctionMultiThreaded_Function().

int EMLocalShapeCostFunction::GetProbDataType (  )  [inline]

Referenced by EMLocalShapeCostFunction_ShapeCostFunctionMultiThreaded_Function(), and InitializeCostFunction().

float* EMLocalShapeCostFunction::GetProbDataWeight (  )  [inline]
int EMLocalShapeCostFunction::GetRegistrationType ( void   )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

unsigned char* EMLocalShapeCostFunction::GetROI (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetROI_LengthX (  )  [inline]
int EMLocalShapeCostFunction::GetROI_LengthY (  )  [inline]
int EMLocalShapeCostFunction::GetROI_LengthZ (  )  [inline]
int EMLocalShapeCostFunction::GetROI_MaxX (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetROI_MaxY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetROI_MaxZ (  )  [inline]
int EMLocalShapeCostFunction::GetROI_MinX (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetROI_MinY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetROI_MinZ (  )  [inline]
int EMLocalShapeCostFunction::GetROIIncY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetROIIncZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::GetSpatialCostFunction (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::Getweights ( int  index  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetweightsIncY (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::GetweightsIncZ (  )  [inline]

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

void EMLocalShapeCostFunction::InitializeCostFunction ( int  PCAMaxX,
int  PCAMinX,
int  PCAMaxY,
int  PCAMinY,
int  PCAMaxZ,
int  PCAMinZ,
int  BoundaryMinX,
int  BoundaryMinY,
int  BoundaryMinZ,
int  Boundary_LengthX,
int  Boundary_LengthY,
float **  w_m,
unsigned char *  PCA_ROI,
void **  initProbDataPtr,
float **  initPCAMeanShapePtr,
int *  initPCAMeanShapeIncY,
int *  initPCAMeanShapeIncZ,
float ***  initPCAEigenVectorsPtr,
int **  initPCAEigenVectorsIncY,
int **  initPCAEigenVectorsIncZ 
)

References DataIncY, DataIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::DataJump, DataJump, DefinePCADataPtr(), EMHierarchyParameters, EMLocalInterface_DefineMultiThreadJump(), EMLocalShapeCostFunction_AssignProbDataPtr(), EMSEGMENT_REGISTRATION_DISABLED, GetProbDataType(), j, k, MultiThreadedParameters, NumberOfTotalTypeCLASS, EMLocalShapeCostFunction_MultiThreadedParameters::NumberOfVoxels, NumOfThreads, PCAEigenVectorsIncY, PCAEigenVectorsIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::PCAEigenVectorsJump, PCAEigenVectorsPtr, PCAMeanShapeIncY, PCAMeanShapeIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::PCAMeanShapeJump, PCAMeanShapePtr, PCANumberOfEigenModes, EMLocal_Hierarchical_Class_Parameters::ProbDataIncY, ProbDataIncY, EMLocal_Hierarchical_Class_Parameters::ProbDataIncZ, ProbDataIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::ProbDataJump, ProbDataPtr, RegistrationType, ROI, ROI_LengthX, ROI_LengthY, ROI_LengthZ, ROI_MaxX, ROI_MaxY, ROI_MaxZ, ROI_MinX, ROI_MinY, ROI_MinZ, ROIIncY, ROIIncZ, EMLocalShapeCostFunction_MultiThreadedParameters::VoxelStart, weights, weightsIncY, and weightsIncZ.

Referenced by itkEMLocalOptimization_Shape_Start().

void EMLocalShapeCostFunction::InitRegSpecPara ( int  RegistrationType,
int  LengthX,
int  LengthY,
int  LengthZ 
)

References Image_Length, Image_MidX, Image_MidY, Image_MidZ, and RegistrationType.

void EMLocalShapeCostFunction::ROI_Unassign (  )  [inline]
void EMLocalShapeCostFunction::SetNumberOfVoxelsInImage ( int  init  )  [inline]
void EMLocalShapeCostFunction::SetProbDataPtr ( void *  init,
int  i 
) [inline]
void EMLocalShapeCostFunction::SetROIExactVoxelCount ( int *  init  )  [inline]
void EMLocalShapeCostFunction::SpatialCostFunctionOff (  ) 

References ParaDepVar, and EMLocalShapeCostFunction_IterationSpecificVariables::SpatialCostFunction.

Referenced by ~EMLocalShapeCostFunction().

void EMLocalShapeCostFunction::SpatialCostFunctionOn (  ) 

References NumberOfVoxelsInImage, ParaDepVar, and EMLocalShapeCostFunction_IterationSpecificVariables::SpatialCostFunction.

double EMLocalShapeCostFunction::Transfere_DistanceMap_Into_SpatialPrior ( double  distance,
float  variance,
float  boundary,
float  Min,
float  Max 
)

References double(), and NumberOfTrainingSamples.

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

void EMLocalShapeCostFunction::TransfereArrayIntoPCAShapeParameters ( float *  PCAParameters,
float **  PCAShapeParameters 
)

References EMSEGMENT_PCASHAPE_DEPENDENT, k, NumberOfTotalTypeCLASS, PCANumberOfEigenModes, and PCAShapeModelType.

Referenced by itkEMLocalOptimization_Shape_Start().

void EMLocalShapeCostFunction::TransferePCAShapeParametersIntoArray ( float **  PCAShapeParameters,
float *  PCAParameters 
)

References EMSEGMENT_PCASHAPE_DEPENDENT, k, NumberOfTotalTypeCLASS, PCANumberOfEigenModes, and PCAShapeModelType.

Referenced by itkEMLocalOptimization_Shape_Start().

Member Data Documentation

float** EMLocalShapeCostFunction::ClassToAtlasRotationMatrix

Referenced by EMLocalShapeCostFunction(), and EMLocalShapeCostFunction_CalculateCostFunction().

float** EMLocalShapeCostFunction::ClassToAtlasTranslationVector

Referenced by EMLocalShapeCostFunction(), and EMLocalShapeCostFunction_CalculateCostFunction().

int EMLocalShapeCostFunction::DataIncY [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::DataIncZ [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::DataJump [private]

Referenced by InitializeCostFunction().

EMLocal_Hierarchical_Class_Parameters* EMLocalShapeCostFunction::EMHierarchyParameters [private]

Referenced by EMLocalShapeCostFunction(), and InitializeCostFunction().

int EMLocalShapeCostFunction::Image_Length[3] [private]

Referenced by InitRegSpecPara().

float EMLocalShapeCostFunction::Image_MidX [private]

Referenced by InitRegSpecPara().

float EMLocalShapeCostFunction::Image_MidY [private]

Referenced by InitRegSpecPara().

float EMLocalShapeCostFunction::Image_MidZ [private]

Referenced by InitRegSpecPara().

char* EMLocalShapeCostFunction::IncludeSpatialPriorForNormalization [private]

Referenced by EMLocalShapeCostFunction(), and ~EMLocalShapeCostFunction().

EMLocalShapeCostFunction_MultiThreadedParameters* EMLocalShapeCostFunction::MultiThreadedParameters [private]

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int EMLocalShapeCostFunction::NumberOfTotalTypeCLASS [private]

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction(), InitializeCostFunction(), TransfereArrayIntoPCAShapeParameters(), TransferePCAShapeParametersIntoArray(), and ~EMLocalShapeCostFunction().

int EMLocalShapeCostFunction::NumberOfTrainingSamples

Referenced by Transfere_DistanceMap_Into_SpatialPrior().

int EMLocalShapeCostFunction::NumberOfVoxelsInImage [private]

Referenced by EMLocalShapeCostFunction(), and SpatialCostFunctionOn().

int EMLocalShapeCostFunction::NumOfThreads [private]

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

EMLocalShapeCostFunction_IterationSpecificVariables* EMLocalShapeCostFunction::ParaDepVar [private]

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction(), SpatialCostFunctionOff(), SpatialCostFunctionOn(), and ~EMLocalShapeCostFunction().

int** EMLocalShapeCostFunction::PCAEigenVectorsIncY [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int** EMLocalShapeCostFunction::PCAEigenVectorsIncZ [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

float*** EMLocalShapeCostFunction::PCAEigenVectorsPtr [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

float** EMLocalShapeCostFunction::PCAInverseEigenValues

Referenced by ComputeCostFunction().

float* EMLocalShapeCostFunction::PCALogisticBoundary

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::PCALogisticMax

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::PCALogisticMin

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

float* EMLocalShapeCostFunction::PCALogisticSlope

Referenced by EMLocalShapeCostFunction_CalculateCostFunction().

int* EMLocalShapeCostFunction::PCAMeanShapeIncY [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int* EMLocalShapeCostFunction::PCAMeanShapeIncZ [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

float** EMLocalShapeCostFunction::PCAMeanShapePtr [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int* EMLocalShapeCostFunction::PCANumberOfEigenModes [private]

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction(), InitializeCostFunction(), TransfereArrayIntoPCAShapeParameters(), and TransferePCAShapeParametersIntoArray().

int EMLocalShapeCostFunction::PCAShapeModelType

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction_CalculateCostFunction(), TransfereArrayIntoPCAShapeParameters(), and TransferePCAShapeParametersIntoArray().

float EMLocalShapeCostFunction::PCASpatialPriorVariance
int EMLocalShapeCostFunction::PCATotalNumOfShapeParameters
int* EMLocalShapeCostFunction::ProbDataIncY [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int* EMLocalShapeCostFunction::ProbDataIncZ [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

void** EMLocalShapeCostFunction::ProbDataPtr [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int EMLocalShapeCostFunction::RegistrationType [private]

Referenced by InitializeCostFunction(), and InitRegSpecPara().

unsigned char* EMLocalShapeCostFunction::ROI [private]

Referenced by EMLocalShapeCostFunction(), and InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_LengthX [private]

Referenced by DefinePCADataPtr(), and InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_LengthY [private]

Referenced by DefinePCADataPtr(), and InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_LengthZ [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_MaxX [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_MaxY [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_MaxZ [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_MinX [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_MinY [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROI_MinZ [private]

Referenced by InitializeCostFunction().

int* EMLocalShapeCostFunction::ROIExactVoxelCount [private]

Referenced by ComputeCostFunction().

int EMLocalShapeCostFunction::ROIIncY [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::ROIIncZ [private]

Referenced by InitializeCostFunction().

vtkMultiThreader* EMLocalShapeCostFunction::Threader [private]

Referenced by ComputeCostFunction(), EMLocalShapeCostFunction(), and ~EMLocalShapeCostFunction().

float** EMLocalShapeCostFunction::weights [private]

Referenced by EMLocalShapeCostFunction(), InitializeCostFunction(), and ~EMLocalShapeCostFunction().

int EMLocalShapeCostFunction::weightsIncY [private]

Referenced by InitializeCostFunction().

int EMLocalShapeCostFunction::weightsIncZ [private]

Referenced by InitializeCostFunction().

The documentation for this class was generated from the following files:
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