itk::VDemonsPreprocessor< TInputImage, TOutputImage > Class Template Reference

#include <VDemonsPreprocessor.h>

Inheritance diagram for itk::VDemonsPreprocessor< TInputImage, TOutputImage >:

List of all members.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Vector< FieldValueType, itkGetStaticConstMacro(ImageDimension) >	FieldPixelType
typedef float	FieldValueType
typedef OutputImageType::IndexType	IndexType
typedef InputImageType::Pointer	InputImagePointer
typedef TInputImage	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef TOutputImage	OutputImageType
typedef OutputImageType::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef VDemonsPreprocessor	Self
typedef OutputImageType::SizeType	SizeType
typedef Object	Superclass
typedef Image< FieldPixelType, itkGetStaticConstMacro(ImageDimension) >	TDeformationField
Public Member Functions
virtual void	Execute ()
std::vector< OutputImagePointer > &	GetOutputFixedImage (void)
std::vector< OutputImagePointer > &	GetOutputMovingImage ()
std::vector< OutputImagePointer > &	GetUnNormalizedFixedImage ()
std::vector< OutputImagePointer > &	GetUnNormalizedMovingImage ()
	itkGetConstMacro (UseHistogramMatching, bool)
	itkGetConstMacro (OutDebug, bool)
	itkGetConstReferenceMacro (Seed, IndexType)
	itkGetConstReferenceMacro (Radius, SizeType)
	itkGetMacro (MedianFilterSize, SizeType)
	itkGetMacro (DefaultPixelValue, PixelType)
	itkGetMacro (Upper, PixelType)
	itkGetMacro (Lower, PixelType)
	itkGetMacro (MovingImageMinimum, InputPixelType)
	itkGetMacro (FixedImageMinimum, InputPixelType)
	itkGetObjectMacro (InitialDeformationField, TDeformationField)
	itkGetStringMacro (MovingBinaryVolume)
	itkGetStringMacro (FixedBinaryVolume)
	itkNewMacro (Self)
	itkSetMacro (UseHistogramMatching, bool)
	itkSetMacro (OutDebug, bool)
	itkSetMacro (Seed, IndexType)
	itkSetMacro (Radius, SizeType)
	itkSetMacro (MedianFilterSize, SizeType)
	itkSetMacro (DefaultPixelValue, PixelType)
	itkSetMacro (Upper, PixelType)
	itkSetMacro (Lower, PixelType)
	itkSetMacro (NumberOfMatchPoints, unsigned long)
	itkSetMacro (NumberOfHistogramLevels, unsigned long)
	itkSetObjectMacro (InitialDeformationField, TDeformationField)
	itkSetStringMacro (MovingBinaryVolume)
	itkSetStringMacro (FixedBinaryVolume)
	itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension)
	itkTypeMacro (VDemonsPreprocessor, Object)
void	SetInputFixedImage (std::vector< InputImagePointer > &image)
void	SetInputMovingImage (std::vector< InputImagePointer > &image)
Protected Member Functions
	VDemonsPreprocessor ()
	~VDemonsPreprocessor ()
Private Member Functions
OutputImagePointer	MakeBOBFImage (OutputImagePointer input, std::string MaskName)
void	operator= (const Self &)
	VDemonsPreprocessor (const Self &)
Private Attributes
PixelType	m_DefaultPixelValue
std::string	m_FixedBinaryVolume
InputPixelType	m_FixedImageMinimum
TDeformationField::Pointer	m_InitialDeformationField
std::vector< InputImagePointer >	m_InputFixedImage
std::vector< InputImagePointer >	m_InputMovingImage
PixelType	m_Lower
SizeType	m_MedianFilterSize
std::string	m_MovingBinaryVolume
InputPixelType	m_MovingImageMinimum
unsigned long	m_NumberOfHistogramLevels
unsigned long	m_NumberOfMatchPoints
bool	m_OutDebug
std::vector< OutputImagePointer >	m_OutputFixedImage
std::vector< OutputImagePointer >	m_OutputMovingImage
SizeType	m_Radius
IndexType	m_Seed
std::vector< OutputImagePointer >	m_UnNormalizedFixedImage
std::vector< OutputImagePointer >	m_UnNormalizedMovingImage
PixelType	m_Upper
bool	m_UseHistogramMatching

---

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::VDemonsPreprocessor< TInputImage, TOutputImage >

This component pre-processes the moving and fixed image before registration. If the fixed image dimensions are different from the moving image it will * resample the moving image to match the fixed image dimensions. Histogram matching is done to solve the intensity mismatch problem.

The preprocessor also called the skull-stripping filter itkBOBF if an atlas and subject whole brain masks are specified.

The preprocessing is activatived by method Execute().

Inputs:

• pointer to original fixed image
• pointer original moving image
• number of histogram levels
• number of match points

Outputs:

• pointer to processed fixed image
• pointer to processed moving image
• the minimum value of original fixed image
• the minimum value of original moving image

---

Member Typedef Documentation

template<typename TInputImage , typename TOutputImage >

typedef SmartPointer< const Self > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::ConstPointer

template<typename TInputImage , typename TOutputImage >

typedef Vector< FieldValueType, itkGetStaticConstMacro(ImageDimension) > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::FieldPixelType

Deformation field pixel type.

template<typename TInputImage , typename TOutputImage >

typedef float itk::VDemonsPreprocessor< TInputImage, TOutputImage >::FieldValueType

Deformation field value type.

template<typename TInputImage , typename TOutputImage >

typedef OutputImageType::IndexType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::IndexType

template<typename TInputImage , typename TOutputImage >

typedef InputImageType::Pointer itk::VDemonsPreprocessor< TInputImage, TOutputImage >::InputImagePointer

template<typename TInputImage , typename TOutputImage >

typedef TInputImage itk::VDemonsPreprocessor< TInputImage, TOutputImage >::InputImageType

Input Image Type.

template<typename TInputImage , typename TOutputImage >

typedef InputImageType::PixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::InputPixelType

Input image pixel type.

template<typename TInputImage , typename TOutputImage >

typedef OutputImageType::Pointer itk::VDemonsPreprocessor< TInputImage, TOutputImage >::OutputImagePointer

template<typename TInputImage , typename TOutputImage >

typedef TOutputImage itk::VDemonsPreprocessor< TInputImage, TOutputImage >::OutputImageType

Output Image Type.

template<typename TInputImage , typename TOutputImage >

typedef OutputImageType::PixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::PixelType

template<typename TInputImage , typename TOutputImage >

typedef SmartPointer< Self > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::Pointer

template<typename TInputImage , typename TOutputImage >

typedef VDemonsPreprocessor itk::VDemonsPreprocessor< TInputImage, TOutputImage >::Self

Standard class typedefs.

template<typename TInputImage , typename TOutputImage >

typedef OutputImageType::SizeType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::SizeType

template<typename TInputImage , typename TOutputImage >

typedef Object itk::VDemonsPreprocessor< TInputImage, TOutputImage >::Superclass

template<typename TInputImage , typename TOutputImage >

typedef Image< FieldPixelType, itkGetStaticConstMacro(ImageDimension) > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::TDeformationField

Deformation field type.

---

Constructor & Destructor Documentation

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::VDemonsPreprocessor

(

)

[protected]

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::~VDemonsPreprocessor

(

)

[inline, protected]

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::VDemonsPreprocessor

(

const Self &

)

[private]

---

Member Function Documentation

template<typename TInputImage , typename TOutputImage >

virtual void itk::VDemonsPreprocessor< TInputImage, TOutputImage >::Execute

(

)

[virtual]

Method to execute the preprocessing.

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer >& itk::VDemonsPreprocessor< TInputImage, TOutputImage >::GetOutputFixedImage

(

void

)

[inline]

Get the output fixed image.

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer >& itk::VDemonsPreprocessor< TInputImage, TOutputImage >::GetOutputMovingImage

(

)

[inline]

Get the output moving image.

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer >& itk::VDemonsPreprocessor< TInputImage, TOutputImage >::GetUnNormalizedFixedImage

(

)

[inline]

Get the output moving image.

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer >& itk::VDemonsPreprocessor< TInputImage, TOutputImage >::GetUnNormalizedMovingImage

(

)

[inline]

Get the output moving image.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetConstMacro	(	UseHistogramMatching	,
		bool
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetConstMacro	(	OutDebug	,
		bool
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetConstReferenceMacro	(	Seed	,
		IndexType
	)

Get the radius of the neighborhood used to compute the median

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetConstReferenceMacro	(	Radius	,
		SizeType
	)

Get the radius of the neighborhood used to compute the median

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetMacro	(	MedianFilterSize	,
		SizeType
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetMacro	(	DefaultPixelValue	,
		PixelType
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetMacro	(	Upper	,
		PixelType
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetMacro	(	Lower	,
		PixelType
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetMacro	(	MovingImageMinimum	,
		InputPixelType
	)

Get minimum value of original moving image.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetMacro	(	FixedImageMinimum	,
		InputPixelType
	)

Get minimum value of original fixed image.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetObjectMacro	(	InitialDeformationField	,
		TDeformationField
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetStringMacro

(

MovingBinaryVolume

)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkGetStringMacro

(

FixedBinaryVolume

)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkNewMacro

(

Self

)

Method for creation through the object factory.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	UseHistogramMatching	,
		bool
	)

Set histogram matching

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	OutDebug	,
		bool
	)

Set Debug mode

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	Seed	,
		IndexType
	)

Set the Seed of the neighborhood used for a mask.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	Radius	,
		SizeType
	)

Set the radius of the neighborhood used for a mask.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	MedianFilterSize	,
		SizeType
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	DefaultPixelValue	,
		PixelType
	)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	Upper	,
		PixelType
	)

Set/Get the upper threshold. The default is 70

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	Lower	,
		PixelType
	)

Set/Get the lower threshold. The default is 0.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	NumberOfMatchPoints	,
		unsigned	long
	)

Set the number of match points to use.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetMacro	(	NumberOfHistogramLevels	,
		unsigned	long
	)

Set the number of histogram levels to use.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetObjectMacro	(	InitialDeformationField	,
		TDeformationField
	)

Set the initial Deformation Field.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetStringMacro

(

MovingBinaryVolume

)

Set Template Mask filename

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkSetStringMacro

(

FixedBinaryVolume

)

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkStaticConstMacro	(	ImageDimension	,
		unsigned	int,
		TInputImage::ImageDimension
	)

Image dimension enumeration.

template<typename TInputImage , typename TOutputImage >

itk::VDemonsPreprocessor< TInputImage, TOutputImage >::itkTypeMacro	(	VDemonsPreprocessor< TInputImage, TOutputImage >	,
		Object
	)

Run-time type information (and related methods).

template<typename TInputImage , typename TOutputImage >

OutputImagePointer itk::VDemonsPreprocessor< TInputImage, TOutputImage >::MakeBOBFImage	(	OutputImagePointer	input,
		std::string	MaskName
	)			[private]

template<typename TInputImage , typename TOutputImage >

void itk::VDemonsPreprocessor< TInputImage, TOutputImage >::operator=

(

const Self &

)

[private]

template<typename TInputImage , typename TOutputImage >

void itk::VDemonsPreprocessor< TInputImage, TOutputImage >::SetInputFixedImage

(

std::vector< InputImagePointer > &

image

)

[inline]

Set the input fixed image.

template<typename TInputImage , typename TOutputImage >

void itk::VDemonsPreprocessor< TInputImage, TOutputImage >::SetInputMovingImage

(

std::vector< InputImagePointer > &

image

)

[inline]

Set the input moving image.

---

Member Data Documentation

template<typename TInputImage , typename TOutputImage >

PixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_DefaultPixelValue [private]

template<typename TInputImage , typename TOutputImage >

std::string itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_FixedBinaryVolume [private]

template<typename TInputImage , typename TOutputImage >

InputPixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_FixedImageMinimum [private]

template<typename TInputImage , typename TOutputImage >

TDeformationField::Pointer itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_InitialDeformationField [private]

template<typename TInputImage , typename TOutputImage >

std::vector< InputImagePointer > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_InputFixedImage [private]

template<typename TInputImage , typename TOutputImage >

std::vector< InputImagePointer > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_InputMovingImage [private]

template<typename TInputImage , typename TOutputImage >

PixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_Lower [private]

template<typename TInputImage , typename TOutputImage >

SizeType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_MedianFilterSize [private]

template<typename TInputImage , typename TOutputImage >

std::string itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_MovingBinaryVolume [private]

template<typename TInputImage , typename TOutputImage >

InputPixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_MovingImageMinimum [private]

template<typename TInputImage , typename TOutputImage >

unsigned long itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_NumberOfHistogramLevels [private]

template<typename TInputImage , typename TOutputImage >

unsigned long itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_NumberOfMatchPoints [private]

template<typename TInputImage , typename TOutputImage >

bool itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_OutDebug [private]

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_OutputFixedImage [private]

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_OutputMovingImage [private]

template<typename TInputImage , typename TOutputImage >

SizeType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_Radius [private]

template<typename TInputImage , typename TOutputImage >

IndexType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_Seed [private]

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_UnNormalizedFixedImage [private]

template<typename TInputImage , typename TOutputImage >

std::vector< OutputImagePointer > itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_UnNormalizedMovingImage [private]

template<typename TInputImage , typename TOutputImage >

PixelType itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_Upper [private]

template<typename TInputImage , typename TOutputImage >

bool itk::VDemonsPreprocessor< TInputImage, TOutputImage >::m_UseHistogramMatching [private]

---

The documentation for this class was generated from the following file:

• Applications/CLI/BRAINSTools/BRAINSDemonWarp/VDemonsPreprocessor.h