vtkEMSegmentKWLogic Class Reference

#include <vtkEMSegmentKWLogic.h>

Inheritance diagram for vtkEMSegmentKWLogic:

List of all members.

Public Member Functions
int	ComputeIntensityDistributionsFromSpatialPrior ()
void	CreateDefaultTasksList (std::vector< std::string > &DefaultTasksName, std::vector< std::string > &DefaultTasksFile, std::vector< std::string > &DefinePreprocessingTasksName, std::vector< std::string > &DefinePreprocessingTasksFile)
vtkstd::string	DefineTclTaskFileFromMRML ()
vtkstd::string	DefineTclTaskFullPathName (const char *TclFileName)
std::string	GetErrorMessage ()
vtkstd::string	GetTclTaskDirectory ()
vtkstd::string	GetTemporaryTaskDirectory ()
virtual bool	PackageAndWriteData (vtkSlicerApplicationLogic *appLogic, const char *packageDirectoryName)
virtual bool	SaveIntermediateResults (vtkSlicerApplicationLogic *appLogic)
virtual int	SourcePreprocessingTclFiles ()
virtual int	SourceTaskFiles ()
virtual int	SourceTclFile (const char *tclFile)
virtual int	StartSegmentationWithoutPreprocessing (vtkSlicerApplicationLogic *appLogic)
void	UpdateIntensityDistributionAuto (vtkIdType nodeID)
int	UpdateTasks ()
	vtkGetObjectMacro (EMSLogic, vtkEMSegmentLogic)
	vtkSetObjectMacro (EMSLogic, vtkEMSegmentLogic)
	vtkSetObjectMacro (SlicerApp, vtkSlicerApplication)
	vtkTypeMacro (vtkEMSegmentKWLogic, vtkObject)
Static Public Member Functions
static vtkEMSegmentKWLogic *	New ()
Private Member Functions
void	operator= (const vtkEMSegmentKWLogic &)
	vtkEMSegmentKWLogic (const vtkEMSegmentKWLogic &)
	vtkEMSegmentKWLogic ()
	~vtkEMSegmentKWLogic ()
Private Attributes
vtkEMSegmentLogic *	EMSLogic
std::string	ErrorMsg
vtkSlicerApplication *	SlicerApp

---

Constructor & Destructor Documentation

vtkEMSegmentKWLogic::vtkEMSegmentKWLogic

(

)

[private]

References EMSLogic, and SlicerApp.

vtkEMSegmentKWLogic::~vtkEMSegmentKWLogic

(

)

[private]

vtkEMSegmentKWLogic::vtkEMSegmentKWLogic

(

const vtkEMSegmentKWLogic &

)

[private]

---

Member Function Documentation

int vtkEMSegmentKWLogic::ComputeIntensityDistributionsFromSpatialPrior

(

)

References EMSLogic, and UpdateIntensityDistributionAuto().

void vtkEMSegmentKWLogic::CreateDefaultTasksList	(	std::vector< std::string > &	DefaultTasksName,
		std::vector< std::string > &	DefaultTasksFile,
		std::vector< std::string > &	DefinePreprocessingTasksName,
		std::vector< std::string > &	DefinePreprocessingTasksFile
	)

References vtkEMSegmentLogic::AddDefaultTasksToList(), EMSLogic, GetTclTaskDirectory(), and GetTemporaryTaskDirectory().

std::string vtkEMSegmentKWLogic::DefineTclTaskFileFromMRML

(

)

References DefineTclTaskFullPathName(), EMSLogic, and vtkMRMLEMSGlobalParametersNode::GetDefaultTaskTclFileName().

Referenced by SourceTaskFiles().

std::string vtkEMSegmentKWLogic::DefineTclTaskFullPathName

(

const char *

TclFileName

)

References GetTclTaskDirectory(), and GetTemporaryTaskDirectory().

Referenced by DefineTclTaskFileFromMRML(), and SourceTaskFiles().

std::string vtkEMSegmentKWLogic::GetErrorMessage

(

)

[inline]

Referenced by vtkEMSegmentGUI::StartSegmentation(), and vtkEMSegmentRunSegmentationStep::StartSegmentationCallback().

vtkstd::string vtkEMSegmentKWLogic::GetTclTaskDirectory

(

)

Copy content directory to another directory with all files and sub-directories. If the "always" argument is true all files are always copied. If it is false, only files that have changed or are new are copied.

References EMSLogic, vtkSlicerModuleLogic::GetModuleShareDirectory(), vtkSlicerApplication::GetTemporaryDirectory(), and SlicerApp.

Referenced by CreateDefaultTasksList(), and DefineTclTaskFullPathName().

vtkstd::string vtkEMSegmentKWLogic::GetTemporaryTaskDirectory

(

)

References vtkSlicerApplication::GetSvnRevision(), vtkSlicerApplication::GetTemporaryDirectory(), and SlicerApp.

Referenced by CreateDefaultTasksList(), DefineTclTaskFullPathName(), and UpdateTasks().

vtkEMSegmentKWLogic * vtkEMSegmentKWLogic::New

(

)

[static]

References autoSlicerTracto2regions::ret.

Referenced by main(), PackageAndWriteData(), and StartSegmentationWithoutPreprocessing().

void vtkEMSegmentKWLogic::operator=

(

const vtkEMSegmentKWLogic &

)

[private]

bool vtkEMSegmentKWLogic::PackageAndWriteData	(	vtkSlicerApplicationLogic *	appLogic,
		const char *	packageDirectoryName
	)			[virtual]

References Slicer3Helper::AddDataIOToScene(), vtkEMSegmentLogic::CreatePackageDirectories(), vtkEMSegmentLogic::CreatePackageFilenames(), EMSLogic, New(), Slicer3Helper::RemoveDataIOFromScene(), vtkMRMLScene::SetRootDirectory(), vtkMRMLScene::SetURL(), SlicerApp, and vtkEMSegmentLogic::WritePackagedScene().

Referenced by SaveIntermediateResults().

bool vtkEMSegmentKWLogic::SaveIntermediateResults

(

vtkSlicerApplicationLogic *

appLogic

)

[virtual]

References EMSLogic, ErrorMsg, and PackageAndWriteData().

Referenced by StartSegmentationWithoutPreprocessing().

int vtkEMSegmentKWLogic::SourcePreprocessingTclFiles

(

)

[virtual]

References EMSLogic, vtkSlicerModuleLogic::GetModuleShareDirectory(), SourceTaskFiles(), and SourceTclFile().

Referenced by RunPreprocessing().

int vtkEMSegmentKWLogic::SourceTaskFiles

(

)

[virtual]

References DefineTclTaskFileFromMRML(), DefineTclTaskFullPathName(), vtkMRMLEMSGlobalParametersNode::GetDefaultTaskTclFileName(), and SourceTclFile().

Referenced by SourcePreprocessingTclFiles().

int vtkEMSegmentKWLogic::SourceTclFile

(

const char *

tclFile

)

[virtual]

References SlicerApp.

Referenced by SourcePreprocessingTclFiles(), and SourceTaskFiles().

int vtkEMSegmentKWLogic::StartSegmentationWithoutPreprocessing

(

vtkSlicerApplicationLogic *

appLogic

)

[virtual]

References vtkEMSegmentLogic::CopyDataToSegmenter(), vtkMRMLVolumeNode::CopyOrientation(), EMSLogic, ErrorMsg, vtkMRMLDisplayableNode::GetDisplayNode(), vtkMRMLScalarVolumeNode::GetLabelMap(), vtkMRMLScalarVolumeNode::LabelMapOn(), New(), vtkImageEMLocalSegmenter::PrintSelf(), SaveIntermediateResults(), vtkMRMLDisplayNode::SetAndObserveColorNodeID(), vtkMRMLVolumeNode::SetAndObserveImageData(), vtkMRMLTransformableNode::SetAndObserveTransformNodeID(), vtkImageIslandFilter::SetNeighborhoodDim3D(), and vtkEMSegmentLogic::SubParcelateSegmentation().

Referenced by main(), and vtkEMSegmentRunSegmentationStep::StartSegmentationCallback().

void vtkEMSegmentKWLogic::UpdateIntensityDistributionAuto

(

vtkIdType

nodeID

)

References Console::c, EMSLogic, vtkMRMLEMSVolumeCollectionNode::GetNthVolumeNodeID(), vtkMRMLEMSVolumeCollectionNode::GetNumberOfVolumes(), return, vtkMRMLEMSTreeParametersLeafNode::SetLogCovariance(), vtkMRMLEMSTreeParametersLeafNode::SetLogMean(), and SlicerApp.

Referenced by ComputeIntensityDistributionsFromSpatialPrior().

int vtkEMSegmentKWLogic::UpdateTasks

(

)

References vtkHTTPHandler::CanHandleURI(), vtkMRMLScene::FindURIHandlerByName(), vtkSlicerApplication::GetMRMLScene(), vtkSlicerApplication::GetSvnRevision(), vtkSlicerApplication::GetTemporaryDirectory(), GetTemporaryTaskDirectory(), SlicerApp, and vtkHTTPHandler::StageFileRead().

vtkEMSegmentKWLogic::vtkGetObjectMacro	(	EMSLogic	,
		vtkEMSegmentLogic
	)

vtkEMSegmentKWLogic::vtkSetObjectMacro	(	EMSLogic	,
		vtkEMSegmentLogic
	)

vtkEMSegmentKWLogic::vtkSetObjectMacro	(	SlicerApp	,
		vtkSlicerApplication
	)

vtkEMSegmentKWLogic::vtkTypeMacro	(	vtkEMSegmentKWLogic	,
		vtkObject
	)

---

Member Data Documentation

vtkEMSegmentLogic* vtkEMSegmentKWLogic::EMSLogic [private]

Referenced by ComputeIntensityDistributionsFromSpatialPrior(), CreateDefaultTasksList(), DefineTclTaskFileFromMRML(), GetTclTaskDirectory(), PackageAndWriteData(), SaveIntermediateResults(), SourcePreprocessingTclFiles(), StartSegmentationWithoutPreprocessing(), UpdateIntensityDistributionAuto(), and vtkEMSegmentKWLogic().

std::string vtkEMSegmentKWLogic::ErrorMsg [private]

Referenced by SaveIntermediateResults(), and StartSegmentationWithoutPreprocessing().

vtkSlicerApplication* vtkEMSegmentKWLogic::SlicerApp [private]

Referenced by GetTclTaskDirectory(), GetTemporaryTaskDirectory(), PackageAndWriteData(), SourceTclFile(), UpdateIntensityDistributionAuto(), UpdateTasks(), and vtkEMSegmentKWLogic().

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The documentation for this class was generated from the following files:

• Modules/EMSegment/KWWidgets/vtkEMSegmentKWLogic.h
• Modules/EMSegment/KWWidgets/vtkEMSegmentKWLogic.cxx