vtkFourDImageLogic Class Reference

#include <vtkFourDImageLogic.h>

Inheritance diagram for vtkFourDImageLogic:

List of all members.

Classes
struct	CoordType
struct	CurveDataSetType
struct	CurveDataType
struct	StatusMessageType
Public Types
enum	{ StatusUpdateEvent = 50001, ProgressDialogEvent = 50002 }
enum	{ TYPE_MEAN, TYPE_SD }
typedef std::map< int, CurveDataType >	CurveDataListType
typedef std::vector< std::string >	FrameNodeVectorType
typedef std::vector< CoordType >	IndexTableType
typedef short	PixelValueType
typedef itk::ImageSeriesReader < VolumeType >	ReaderType
typedef std::map< std::string, std::string >	RegistrationParametersType
typedef itk::OrientedImage < PixelValueType, 3 >	VolumeType
Public Member Functions
vtkMRMLScalarVolumeNode *	AddDisplayBufferNode (vtkMRMLTimeSeriesBundleNode *bundleNode, int index)
vtkMRMLTimeSeriesBundleNode *	AddNewFourDBundleNode ()
void	CreateFileListFromDir (const char *path, std::vector< ReaderType::FileNamesContainer > &fileNamesContainerList, const char *order, const char *filter, int nFrames, int nSlices, int nChannels, int channel)
int	CreateFileListFromDir (const char *path, std::vector< ReaderType::FileNamesContainer > &fileNamesContainerList)
int	GenerateBundleFrames (vtkMRMLTimeSeriesBundleNode *inputBundleNode, vtkMRMLTimeSeriesBundleNode *outputBundleNode)
vtkSlicerApplication *	GetApplication ()
const char *	GetFrameNodeID (int index)
int	GetNumberOfFrames ()
const char *	GetRegisteredFrameNodeID (int index)
vtkMRMLTimeSeriesBundleNode *	LoadImagesByList (const char *bundleNodeName, std::vector< ReaderType::FileNamesContainer > &fileNamesContainerList)
vtkMRMLTimeSeriesBundleNode *	LoadImagesFromDir (const char *path, const char *bundleNodeName, const char *order, const char *filter, int nFrames, int nSlices, int nChannels, int channel)
vtkMRMLTimeSeriesBundleNode *	LoadImagesFromDir (const char *path, const char *bundleNodeName)
void	PrintSelf (ostream &, vtkIndent)
int	SaveImagesToDir (const char *path, const char *bundleID, const char *prefix, const char *suffix)
void	SetApplication (vtkSlicerApplication *app)
int	SortFilesFromDirToCreateFileList (const char *path, std::vector< ReaderType::FileNamesContainer > &fileNamesContainerList)
void	UpdateDisplayBufferNode (vtkMRMLTimeSeriesBundleNode *bundleNode, int index)
	vtkTypeRevisionMacro (vtkFourDImageLogic, vtkObject)
Static Public Member Functions
static vtkFourDImageLogic *	New ()
	The Usual vtk class functions.
Protected Member Functions
void	operator= (const vtkFourDImageLogic &)
virtual void	ProcessLogicEvents (vtkObject *, unsigned long, void *)
void	UpdateAll ()
	vtkFourDImageLogic (const vtkFourDImageLogic &)
	vtkFourDImageLogic ()
	~vtkFourDImageLogic ()
Static Protected Member Functions
static void	DataCallback (vtkObject *, unsigned long, void *, void *)
Protected Attributes
vtkSlicerApplication *	Application
vtkCallbackCommand *	DataCallbackCommand
Private Attributes
FrameNodeVectorType	FrameNodeVector
FrameNodeVectorType	RegisteredFrameNodeVector
std::string	RegisteredVolumeBundleID
std::string	VolumeBundleID

---

Member Typedef Documentation

typedef std::map<int, CurveDataType> vtkFourDImageLogic::CurveDataListType

typedef std::vector<std::string> vtkFourDImageLogic::FrameNodeVectorType

typedef std::vector<CoordType> vtkFourDImageLogic::IndexTableType

typedef short vtkFourDImageLogic::PixelValueType

typedef itk::ImageSeriesReader< VolumeType > vtkFourDImageLogic::ReaderType

typedef std::map<std::string, std::string> vtkFourDImageLogic::RegistrationParametersType

typedef itk::OrientedImage< PixelValueType, 3 > vtkFourDImageLogic::VolumeType

---

Member Enumeration Documentation

anonymous enum

Enumerator:

StatusUpdateEvent
ProgressDialogEvent

anonymous enum

Enumerator:

TYPE_MEAN
TYPE_SD

---

Constructor & Destructor Documentation

vtkFourDImageLogic::vtkFourDImageLogic

(

)

[protected]

References DataCallback(), DataCallbackCommand, FrameNodeVector, New(), RegisteredVolumeBundleID, and VolumeBundleID.

vtkFourDImageLogic::~vtkFourDImageLogic

(

)

[protected]

References DataCallbackCommand.

vtkFourDImageLogic::vtkFourDImageLogic

(

const vtkFourDImageLogic &

)

[protected]

---

Member Function Documentation

vtkMRMLScalarVolumeNode * vtkFourDImageLogic::AddDisplayBufferNode	(	vtkMRMLTimeSeriesBundleNode *	bundleNode,
		int	index
	)

References vtkMRMLScene::AddNode(), vtkMRMLScalarVolumeNode::Copy(), vtkSlicerColorLogic::GetDefaultVolumeColorNodeID(), vtkMRMLTimeSeriesBundleNode::GetFrameNode(), New(), vtkMRMLDisplayNode::SetAndObserveColorNodeID(), vtkMRMLDisplayableNode::SetAndObserveDisplayNodeID(), vtkMRMLVolumeNode::SetAndObserveImageData(), vtkMRMLTransformableNode::SetAndObserveTransformNodeID(), vtkMRMLScalarVolumeDisplayNode::SetAutoWindowLevel(), vtkMRMLTimeSeriesBundleNode::SetDisplayBufferNodeID(), and vtkMRMLNode::SetScene().

Referenced by GenerateBundleFrames(), and LoadImagesByList().

vtkMRMLTimeSeriesBundleNode * vtkFourDImageLogic::AddNewFourDBundleNode

(

)

References vtkMRMLScene::AddNode(), vtkMRMLScene::CreateNodeByClass(), vtkMRMLScene::GetUniqueNameByString(), vtkSlicerLogic::MRMLScene, slicerget::name, and vtkMRMLNode::SetScene().

Referenced by vtkFourDImageGUI::GetActiveTimeSeriesBundleNode().

void vtkFourDImageLogic::CreateFileListFromDir	(	const char *	path,
		std::vector< ReaderType::FileNamesContainer > &	fileNamesContainerList,
		const char *	order,
		const char *	filter,
		int	nFrames,
		int	nSlices,
		int	nChannels,
		int	channel
	)

References New(), and ipTk::s.

int vtkFourDImageLogic::CreateFileListFromDir	(	const char *	path,
		std::vector< ReaderType::FileNamesContainer > &	fileNamesContainerList
	)

References double(), birnlexvis::filenames, j, vtkFourDImageLogic::StatusMessageType::message, New(), vtkFourDImageLogic::StatusMessageType::progress, ProgressDialogEvent, vtkFourDImageLogic::StatusMessageType::show, and ModifyHeader::tag.

Referenced by LoadImagesFromDir().

static void vtkFourDImageLogic::DataCallback	(	vtkObject *	,
		unsigned	long,
		void *	,
		void *
	)			[static, protected]

Referenced by vtkFourDImageLogic().

int vtkFourDImageLogic::GenerateBundleFrames	(	vtkMRMLTimeSeriesBundleNode *	inputBundleNode,
		vtkMRMLTimeSeriesBundleNode *	outputBundleNode
	)

References AddDisplayBufferNode(), vtkMRMLTimeSeriesBundleNode::AddFrame(), vtkMRMLScene::AddNode(), vtkMRMLScalarVolumeNode::Copy(), double(), vtkSlicerColorLogic::GetDefaultVolumeColorNodeID(), vtkMRMLTimeSeriesBundleNode::GetDisplayBufferNode(), vtkMRMLTimeSeriesBundleNode::GetFrameNode(), vtkMRMLTimeSeriesBundleNode::GetNumberOfFrames(), vtkFourDImageLogic::StatusMessageType::message, New(), vtkFourDImageLogic::StatusMessageType::progress, ProgressDialogEvent, vtkMRMLTimeSeriesBundleNode::RemoveFrame(), vtkMRMLDisplayNode::SetAndObserveColorNodeID(), vtkMRMLDisplayableNode::SetAndObserveDisplayNodeID(), vtkMRMLVolumeNode::SetAndObserveImageData(), vtkMRMLTransformableNode::SetAndObserveTransformNodeID(), vtkMRMLNode::SetScene(), vtkFourDImageLogic::StatusMessageType::show, and vtkMRMLTransformableNode::TransformModifiedEvent.

vtkSlicerApplication* vtkFourDImageLogic::GetApplication

(

)

[inline]

Referenced by SaveImagesToDir().

const char * vtkFourDImageLogic::GetFrameNodeID

(

int

index

)

References FrameNodeVector.

int vtkFourDImageLogic::GetNumberOfFrames

(

)

References FrameNodeVector.

const char * vtkFourDImageLogic::GetRegisteredFrameNodeID

(

int

index

)

References RegisteredFrameNodeVector.

vtkMRMLTimeSeriesBundleNode * vtkFourDImageLogic::LoadImagesByList	(	const char *	bundleNodeName,
		std::vector< ReaderType::FileNamesContainer > &	fileNamesContainerList
	)

References AddDisplayBufferNode(), vtkMRMLStorageNode::AddFileName(), vtkMRMLTimeSeriesBundleNode::AddFrame(), vtkMRMLScene::AddNode(), double(), FrameNodeVector, vtkSlicerColorLogic::GetDefaultVolumeColorNodeID(), vtkMRMLTimeSeriesBundleNode::GetDisplayBufferNode(), vtkFourDImageLogic::StatusMessageType::message, vtkMRMLTimeSeriesBundleNode::TimeStamp::nanosecond, New(), vtkFourDImageLogic::StatusMessageType::progress, ProgressDialogEvent, vtkMRMLVolumeArchetypeStorageNode::ReadData(), vtkMRMLStorageNode::ResetFileNameList(), vtkMRMLScene::SaveStateForUndo(), vtkMRMLTimeSeriesBundleNode::TimeStamp::second, vtkMRMLDisplayNode::SetAndObserveColorNodeID(), vtkMRMLDisplayableNode::SetAndObserveDisplayNodeID(), vtkMRMLStorableNode::SetAndObserveStorageNodeID(), vtkMRMLTransformableNode::SetAndObserveTransformNodeID(), vtkMRMLScalarVolumeDisplayNode::SetAutoWindowLevel(), vtkMRMLNode::SetScene(), vtkMRMLTimeSeriesBundleNode::SetTimeStamp(), vtkFourDImageLogic::StatusMessageType::show, slicerget::size, vtkMRMLTransformableNode::TransformModifiedEvent, and UpdateDisplayBufferNode().

Referenced by LoadImagesFromDir().

vtkMRMLTimeSeriesBundleNode * vtkFourDImageLogic::LoadImagesFromDir	(	const char *	path,
		const char *	bundleNodeName,
		const char *	order,
		const char *	filter,
		int	nFrames,
		int	nSlices,
		int	nChannels,
		int	channel
	)

References CreateFileListFromDir(), and LoadImagesByList().

vtkMRMLTimeSeriesBundleNode * vtkFourDImageLogic::LoadImagesFromDir	(	const char *	path,
		const char *	bundleNodeName
	)

References LoadImagesByList(), and SortFilesFromDirToCreateFileList().

static vtkFourDImageLogic* vtkFourDImageLogic::New

(

)

[static]

The Usual vtk class functions.

Reimplemented from vtkSlicerModuleLogic.

Referenced by AddDisplayBufferNode(), CreateFileListFromDir(), GenerateBundleFrames(), LoadImagesByList(), SortFilesFromDirToCreateFileList(), UpdateDisplayBufferNode(), and vtkFourDImageLogic().

void vtkFourDImageLogic::operator=

(

const vtkFourDImageLogic &

)

[protected]

Reimplemented from vtkSlicerModuleLogic.

void vtkFourDImageLogic::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkSlicerModuleLogic.

virtual void vtkFourDImageLogic::ProcessLogicEvents	(	vtkObject *	,
		unsigned	long,
		void *
	)			[protected, virtual]

Reimplemented from vtkSlicerLogic.

int vtkFourDImageLogic::SaveImagesToDir	(	const char *	path,
		const char *	bundleID,
		const char *	prefix,
		const char *	suffix
	)

References NodeSelector::app, double(), fileName, GetApplication(), vtkMRMLTimeSeriesBundleNode::GetFrameNode(), vtkSlicerApplication::GetModuleGUIByName(), vtkMRMLTimeSeriesBundleNode::GetNumberOfFrames(), vtkFourDImageLogic::StatusMessageType::message, vtkFourDImageLogic::StatusMessageType::progress, ProgressDialogEvent, and vtkFourDImageLogic::StatusMessageType::show.

void vtkFourDImageLogic::SetApplication

(

vtkSlicerApplication *

app

)

[inline]

int vtkFourDImageLogic::SortFilesFromDirToCreateFileList	(	const char *	path,
		std::vector< ReaderType::FileNamesContainer > &	fileNamesContainerList
	)

References double(), birnlexvis::filenames, j, vtkFourDImageLogic::StatusMessageType::message, New(), vtkFourDImageLogic::StatusMessageType::progress, ProgressDialogEvent, vtkFourDImageLogic::StatusMessageType::show, and ModifyHeader::tag.

Referenced by LoadImagesFromDir().

void vtkFourDImageLogic::UpdateAll

(

)

[protected]

void vtkFourDImageLogic::UpdateDisplayBufferNode	(	vtkMRMLTimeSeriesBundleNode *	bundleNode,
		int	index
	)

References vtkMRMLScalarVolumeNode::Copy(), vtkSlicerColorLogic::GetDefaultVolumeColorNodeID(), vtkMRMLTimeSeriesBundleNode::GetDisplayBufferNode(), vtkMRMLDisplayableNode::GetDisplayNode(), vtkMRMLTimeSeriesBundleNode::GetFrameNode(), vtkMRMLNode::Modified(), New(), vtkMRMLVolumeNode::SetAndObserveImageData(), and vtkMRMLTransformableNode::SetAndObserveTransformNodeID().

Referenced by LoadImagesByList().

vtkFourDImageLogic::vtkTypeRevisionMacro	(	vtkFourDImageLogic	,
		vtkObject
	)

Reimplemented from vtkSlicerLogic.

---

Member Data Documentation

vtkSlicerApplication* vtkFourDImageLogic::Application [protected]

vtkCallbackCommand* vtkFourDImageLogic::DataCallbackCommand [protected]

Referenced by vtkFourDImageLogic(), and ~vtkFourDImageLogic().

FrameNodeVectorType vtkFourDImageLogic::FrameNodeVector [private]

Referenced by GetFrameNodeID(), GetNumberOfFrames(), LoadImagesByList(), and vtkFourDImageLogic().

FrameNodeVectorType vtkFourDImageLogic::RegisteredFrameNodeVector [private]

Referenced by GetRegisteredFrameNodeID().

std::string vtkFourDImageLogic::RegisteredVolumeBundleID [private]

Referenced by vtkFourDImageLogic().

std::string vtkFourDImageLogic::VolumeBundleID [private]

Referenced by vtkFourDImageLogic().

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The documentation for this class was generated from the following files:

• Modules/FourDImage/vtkFourDImageLogic.h
• Modules/FourDImage/vtkFourDImageLogic.cxx