vtkImageEMLocalClass Class Reference

#include <vtkImageEMLocalClass.h>

Inheritance diagram for vtkImageEMLocalClass:

Public Member Functions
int	CheckAndAssignPCAImageData (vtkImageData *inData, int ImageIndex)
double *	GetLogCovariance (int i)
double **	GetLogCovariance ()
double *	GetLogMu ()
double *	GetPCAEigenValues ()
int	GetPCAEigenVectorIncY (int index, int type)
int	GetPCAEigenVectorIncZ (int index, int type)
void *	GetPCAEigenVectorPtr (int index, int type)
int	GetPCAMeanShapeIncY (int Type)
int	GetPCAMeanShapeIncZ (int Type)
void *	GetPCAMeanShapePtr (int Type)
int	GetPCANumberOfEigenModes ()
float *	GetPCAShapeParameters ()
vtkImageData *	GetReferenceStandard ()
void	PrintPCAParameters (ostream &os, vtkIndent indent)
void	PrintSelf (ostream &os, vtkIndent indent)
void	SetLogCovariance (double value, int y, int x)
void	SetLogMu (double mu, int x)
void	SetNumInputImages (int number)
void	SetPCAEigenValues (int index, double value)
void	SetPCAEigenVector (vtkImageData *image, int index)
void	SetPCAMeanShape (vtkImageData *image)
void	SetPCANumberOfEigenModes (int init)
void	SetPCAShapeParameters (float *init)
void	SetPrintQuality (int init)
void	SetReferenceStandard (vtkImageData *image)
	vtkGetMacro (PCALogisticSlope, float)
	vtkGetMacro (PCALogisticBoundary, float)
	vtkGetMacro (PCALogisticMin, float)
	vtkGetMacro (PCALogisticMax, float)
	vtkGetMacro (PrintPCA, int)
	vtkGetMacro (PrintQuality, int)
	vtkSetMacro (PCALogisticSlope, float)
	vtkSetMacro (PCALogisticBoundary, float)
	vtkSetMacro (PCALogisticMin, float)
	vtkSetMacro (PCALogisticMax, float)
	vtkSetMacro (PrintPCA, int)
	vtkSetMacro (Label, short)
	vtkTypeMacro (vtkImageEMLocalClass, vtkObject)
Static Public Member Functions
static vtkImageEMLocalClass *	New ()
Protected Member Functions
void	DeleteClassVariables ()
void	DeletePCAParameters ()
void	ExecuteData (vtkDataObject *)
void	operator= (const vtkImageEMLocalClass &)
void	ThreadedExecute (vtkImageData *vtkNotUsed(inData), vtkImageData vtkNotUsed(outData), int vtkNotUsed(outExt)[6], int vtkNotUsed(id))
	vtkImageEMLocalClass (const vtkImageEMLocalClass &)
	vtkImageEMLocalClass ()
	~vtkImageEMLocalClass ()
Protected Attributes
double **	LogCovariance
double *	LogMu
double *	PCAEigenValues
vtkImageData **	PCAEigenVectorImageData
float	PCALogisticBoundary
float	PCALogisticMax
float	PCALogisticMin
float	PCALogisticSlope
vtkImageData *	PCAMeanShapeImageData
int	PCANumberOfEigenModes
float *	PCAShapeParameters
int	PrintPCA
int	PrintQuality
vtkImageData *	ReferenceStandardPtr

Constructor & Destructor Documentation

vtkImageEMLocalClass::vtkImageEMLocalClass ( ) [protected]

References LogCovariance, LogMu, PCAEigenValues, PCAEigenVectorImageData, PCALogisticBoundary, PCALogisticMax, PCALogisticMin, PCALogisticSlope, PCAMeanShapeImageData, PCANumberOfEigenModes, PCAShapeParameters, PrintPCA, PrintQuality, vtkImageEMGenericClass::ProbDataWeight, and ReferenceStandardPtr.

vtkImageEMLocalClass::~vtkImageEMLocalClass ( ) [inline, protected]

vtkImageEMLocalClass::vtkImageEMLocalClass ( const vtkImageEMLocalClass & ) [protected]

Member Function Documentation

int vtkImageEMLocalClass::CheckAndAssignPCAImageData	(	vtkImageData *	inData,
		int	ImageIndex
	)

References vtkImageEMLocalGenericClass::CheckInputImage(), PCAEigenVectorImageData, and PCAMeanShapeImageData.

Referenced by ExecuteData().

void vtkImageEMLocalClass::DeleteClassVariables ( ) [protected]

References DeletePCAParameters(), LogCovariance, LogMu, vtkImageEMGenericClass::NumInputImages, vtkImageEMLocalGenericClass::ProbImageData, and ReferenceStandardPtr.

Referenced by SetNumInputImages().

void vtkImageEMLocalClass::DeletePCAParameters ( ) [protected]

References PCAEigenValues, PCAEigenVectorImageData, PCANumberOfEigenModes, and PCAShapeParameters.

Referenced by DeleteClassVariables(), and SetPCANumberOfEigenModes().

void vtkImageEMLocalClass::ExecuteData ( vtkDataObject * ) [protected]

Reimplemented from vtkImageEMLocalGenericClass.

References CheckAndAssignPCAImageData(), vtkImageEMGenericClass::GetErrorFlag(), vtkImageEMGenericClass::GetErrorMessages(), j, k, vtkImageEMGenericClass::Label, LogCovariance, LogMu, vtkImageEMGenericClass::NumInputImages, PCANumberOfEigenModes, PrintSelf(), vtkImageEMGenericClass::ProbDataWeight, vtkImageEMGenericClass::ResetErrorMessage(), vtkImageEMGenericClass::ResetWarningMessage(), return, vtkEMAddErrorMessage, and vtkEMAddWarningMessage.

double* vtkImageEMLocalClass::GetLogCovariance ( int i ) [inline]

double** vtkImageEMLocalClass::GetLogCovariance ( ) [inline]

double* vtkImageEMLocalClass::GetLogMu ( ) [inline]

double* vtkImageEMLocalClass::GetPCAEigenValues ( ) [inline]

int vtkImageEMLocalClass::GetPCAEigenVectorIncY	(	int	index,
		int	type
	)			`[inline]`

References vtkImageEMLocalGenericClass::GetImageDataInc().

int vtkImageEMLocalClass::GetPCAEigenVectorIncZ	(	int	index,
		int	type
	)			`[inline]`

References vtkImageEMLocalGenericClass::GetImageDataInc().

void* vtkImageEMLocalClass::GetPCAEigenVectorPtr	(	int	index,
		int	type
	)			`[inline]`

References vtkImageEMLocalGenericClass::GetDataPtr().

int vtkImageEMLocalClass::GetPCAMeanShapeIncY ( int Type ) [inline]

References vtkImageEMLocalGenericClass::GetImageDataInc().

int vtkImageEMLocalClass::GetPCAMeanShapeIncZ ( int Type ) [inline]

References vtkImageEMLocalGenericClass::GetImageDataInc().

void* vtkImageEMLocalClass::GetPCAMeanShapePtr ( int Type ) [inline]

References vtkImageEMLocalGenericClass::GetDataPtr().

int vtkImageEMLocalClass::GetPCANumberOfEigenModes ( ) [inline]

float* vtkImageEMLocalClass::GetPCAShapeParameters ( ) [inline]

vtkImageData* vtkImageEMLocalClass::GetReferenceStandard ( ) [inline]

vtkImageEMLocalClass * vtkImageEMLocalClass::New ( ) [static]

Reimplemented from vtkImageEMLocalGenericClass.

References autoSlicerTracto2regions::ret.

void vtkImageEMLocalClass::operator= ( const vtkImageEMLocalClass & ) [protected]

Reimplemented from vtkImageEMLocalGenericClass.

void vtkImageEMLocalClass::PrintPCAParameters	(	ostream &	os,
		vtkIndent	indent
	)

References PCAEigenValues, PCAEigenVectorImageData, PCALogisticBoundary, PCALogisticMax, PCALogisticMin, PCALogisticSlope, PCAMeanShapeImageData, and PCANumberOfEigenModes.

Referenced by PrintSelf().

void vtkImageEMLocalClass::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkImageEMLocalGenericClass.

References LogCovariance, LogMu, vtkImageEMGenericClass::NumInputImages, PrintPCA, PrintPCAParameters(), PrintQuality, and ReferenceStandardPtr.

Referenced by ExecuteData().

void vtkImageEMLocalClass::SetLogCovariance	(	double	value,
		int	y,
		int	x
	)

References LogCovariance, vtkImageEMGenericClass::NumInputImages, and vtkEMAddErrorMessage.

Referenced by vtkEMSegmentLogic::CopyTreeLeafDataToSegmenter().

void vtkImageEMLocalClass::SetLogMu	(	double	mu,
		int	x
	)

References LogMu, vtkImageEMGenericClass::NumInputImages, and vtkEMAddErrorMessage.

Referenced by vtkEMSegmentLogic::CopyTreeLeafDataToSegmenter().

void vtkImageEMLocalClass::SetNumInputImages ( int number )

Reimplemented from vtkImageEMGenericClass.

References DeleteClassVariables(), LogCovariance, LogMu, and vtkImageEMGenericClass::NumInputImages.

Referenced by vtkEMSegmentLogic::CopyTreeDataToSegmenter().

void vtkImageEMLocalClass::SetPCAEigenValues	(	int	index,
		double	value
	)			`[inline]`

void vtkImageEMLocalClass::SetPCAEigenVector	(	vtkImageData *	image,
		int	index
	)

References PCANumberOfEigenModes, and vtkEMAddErrorMessage.

void vtkImageEMLocalClass::SetPCAMeanShape ( vtkImageData * image ) [inline]

void vtkImageEMLocalClass::SetPCANumberOfEigenModes ( int init )

References DeletePCAParameters(), PCAEigenValues, PCAEigenVectorImageData, PCANumberOfEigenModes, and PCAShapeParameters.

void vtkImageEMLocalClass::SetPCAShapeParameters ( float * init ) [inline]

void vtkImageEMLocalClass::SetPrintQuality ( int init )

References EMSEGMENT_NUM_OF_QUALITY_MEASURE, PrintQuality, and vtkEMAddErrorMessage.

Referenced by vtkEMSegmentLogic::CopyTreeLeafDataToSegmenter().

void vtkImageEMLocalClass::SetReferenceStandard ( vtkImageData * image ) [inline]

void vtkImageEMLocalClass::ThreadedExecute	(	vtkImageData **	vtkNotUsedinData,
		vtkImageData *	vtkNotUsedoutData,
		int	vtkNotUsed(outExt)[6],
		int	vtkNotUsedid
	)			`[inline, protected]`

Reimplemented from vtkImageEMGenericClass.

vtkImageEMLocalClass::vtkGetMacro	(	PCALogisticSlope	,
		float
	)

vtkImageEMLocalClass::vtkGetMacro	(	PCALogisticBoundary	,
		float
	)

vtkImageEMLocalClass::vtkGetMacro	(	PCALogisticMin	,
		float
	)

vtkImageEMLocalClass::vtkGetMacro	(	PCALogisticMax	,
		float
	)

vtkImageEMLocalClass::vtkGetMacro	(	PrintPCA	,
		int
	)

vtkImageEMLocalClass::vtkGetMacro	(	PrintQuality	,
		int
	)

vtkImageEMLocalClass::vtkSetMacro	(	PCALogisticSlope	,
		float
	)

vtkImageEMLocalClass::vtkSetMacro	(	PCALogisticBoundary	,
		float
	)

vtkImageEMLocalClass::vtkSetMacro	(	PCALogisticMin	,
		float
	)

vtkImageEMLocalClass::vtkSetMacro	(	PCALogisticMax	,
		float
	)

vtkImageEMLocalClass::vtkSetMacro	(	PrintPCA	,
		int
	)

vtkImageEMLocalClass::vtkSetMacro	(	Label	,
		short
	)

vtkImageEMLocalClass::vtkTypeMacro	(	vtkImageEMLocalClass	,
		vtkObject
	)

Reimplemented from vtkImageEMLocalGenericClass.

Member Data Documentation

double** vtkImageEMLocalClass::LogCovariance [protected]

Referenced by DeleteClassVariables(), ExecuteData(), PrintSelf(), SetLogCovariance(), SetNumInputImages(), and vtkImageEMLocalClass().

double* vtkImageEMLocalClass::LogMu [protected]

Referenced by DeleteClassVariables(), ExecuteData(), PrintSelf(), SetLogMu(), SetNumInputImages(), and vtkImageEMLocalClass().

double* vtkImageEMLocalClass::PCAEigenValues [protected]

Referenced by DeletePCAParameters(), PrintPCAParameters(), SetPCANumberOfEigenModes(), and vtkImageEMLocalClass().

vtkImageData** vtkImageEMLocalClass::PCAEigenVectorImageData [protected]

Referenced by CheckAndAssignPCAImageData(), DeletePCAParameters(), PrintPCAParameters(), SetPCANumberOfEigenModes(), and vtkImageEMLocalClass().

float vtkImageEMLocalClass::PCALogisticBoundary [protected]

Referenced by PrintPCAParameters(), and vtkImageEMLocalClass().

float vtkImageEMLocalClass::PCALogisticMax [protected]

Referenced by PrintPCAParameters(), and vtkImageEMLocalClass().

float vtkImageEMLocalClass::PCALogisticMin [protected]

Referenced by PrintPCAParameters(), and vtkImageEMLocalClass().

float vtkImageEMLocalClass::PCALogisticSlope [protected]

Referenced by PrintPCAParameters(), and vtkImageEMLocalClass().

vtkImageData* vtkImageEMLocalClass::PCAMeanShapeImageData [protected]

Referenced by CheckAndAssignPCAImageData(), PrintPCAParameters(), and vtkImageEMLocalClass().

int vtkImageEMLocalClass::PCANumberOfEigenModes [protected]

Referenced by DeletePCAParameters(), ExecuteData(), PrintPCAParameters(), SetPCAEigenVector(), SetPCANumberOfEigenModes(), and vtkImageEMLocalClass().

float* vtkImageEMLocalClass::PCAShapeParameters [protected]

Referenced by DeletePCAParameters(), SetPCANumberOfEigenModes(), and vtkImageEMLocalClass().

int vtkImageEMLocalClass::PrintPCA [protected]

Referenced by PrintSelf(), and vtkImageEMLocalClass().

int vtkImageEMLocalClass::PrintQuality [protected]

Referenced by PrintSelf(), SetPrintQuality(), and vtkImageEMLocalClass().

vtkImageData* vtkImageEMLocalClass::ReferenceStandardPtr [protected]

Referenced by DeleteClassVariables(), PrintSelf(), and vtkImageEMLocalClass().

The documentation for this class was generated from the following files:

Modules/EMSegment/Algorithm/vtkImageEMLocalClass.h
Modules/EMSegment/Algorithm/vtkImageEMLocalClass.cxx

vtkImageEMLocalClass Class Reference

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation