vtkMRMLDiffusionTensorVolumeDisplayNode Class Reference

#include <vtkMRMLDiffusionTensorVolumeDisplayNode.h>

Inheritance diagram for vtkMRMLDiffusionTensorVolumeDisplayNode:

Public Member Functions
virtual void	AddSliceGlyphDisplayNodes (vtkMRMLVolumeNode *node)
virtual void	Copy (vtkMRMLNode *node)
virtual vtkMRMLNode *	CreateNodeInstance ()
virtual vtkImageData *	GetImageData ()
virtual const char *	GetNodeTagName ()
virtual const char *	GetScalarInvariantAsString ()
virtual std::vector < vtkMRMLGlyphableVolumeSliceDisplayNode * >	GetSliceGlyphDisplayNodes (vtkMRMLVolumeNode *node)
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	ProcessMRMLEvents (vtkObject , unsigned long, void )
virtual void	ReadXMLAttributes (const char **atts)
virtual void	SetImageData (vtkImageData *imageData)
	Display Information.
void	SetScalarInvariantToFractionalAnisotropy ()
void	SetScalarInvariantToLinearMeasure ()
void	SetScalarInvariantToPlanarMeasure ()
void	SetScalarInvariantToRelativeAnisotropy ()
	Set scalar invariant to relative anisotropy.
void	SetScalarInvariantToSphericalMeasure ()
void	SetScalarInvariantToTrace ()
virtual void	UpdateImageDataPipeline ()
virtual void	UpdateReferenceID (const char oldID, const char newID)
virtual void	UpdateReferences ()
virtual void	UpdateScene (vtkMRMLScene *scene)
	vtkGetMacro (ScalarInvariant, int)
	vtkGetObjectMacro (ShiftScale, vtkImageShiftScale)
	vtkGetObjectMacro (DTIMathematicsAlpha, vtkDiffusionTensorMathematicsSimple)
	vtkGetObjectMacro (DTIMathematics, vtkDiffusionTensorMathematicsSimple)
	vtkSetMacro (ScalarInvariant, int)
	vtkTypeMacro (vtkMRMLDiffusionTensorVolumeDisplayNode, vtkMRMLGlyphableVolumeDisplayNode)
virtual void	WriteXML (ostream &of, int indent)
Static Public Member Functions
static vtkMRMLDiffusionTensorVolumeDisplayNode *	New ()
Protected Member Functions
void	operator= (const vtkMRMLDiffusionTensorVolumeDisplayNode &)
	vtkMRMLDiffusionTensorVolumeDisplayNode (const vtkMRMLDiffusionTensorVolumeDisplayNode &)
	vtkMRMLDiffusionTensorVolumeDisplayNode ()
	~vtkMRMLDiffusionTensorVolumeDisplayNode ()
Protected Attributes
vtkDiffusionTensorGlyph *	DiffusionTensorGlyphFilter
vtkDiffusionTensorMathematicsSimple *	DTIMathematics
	used for main scalar invarant (can be 1 or 3 component)
vtkDiffusionTensorMathematicsSimple *	DTIMathematicsAlpha
	used for calculating single component magnitude for color images
vtkImageExtractComponents *	ExtractComponents
vtkImageCast *	ImageCast
vtkImageMathematics *	ImageMath
int	ScalarInvariant
	Scalar display parameters.
vtkImageShiftScale *	ShiftScale

Constructor & Destructor Documentation

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkMRMLDiffusionTensorVolumeDisplayNode ( ) [protected]

References DiffusionTensorGlyphFilter, DTIMathematics, DTIMathematicsAlpha, ExtractComponents, vtkMRMLDiffusionTensorDisplayPropertiesNode::FractionalAnisotropy, ImageCast, ImageMath, vtkMRMLScalarVolumeDisplayNode::MapToWindowLevelColors, New(), ScalarInvariant, ShiftScale, TestScriptedActor::sphere, vtkMRMLScalarVolumeDisplayNode::Threshold, and vtkMRMLGlyphableVolumeDisplayNode::VisualizationMode.

vtkMRMLDiffusionTensorVolumeDisplayNode::~vtkMRMLDiffusionTensorVolumeDisplayNode ( ) [protected]

References DiffusionTensorGlyphFilter, DTIMathematics, DTIMathematicsAlpha, ExtractComponents, ImageCast, ImageMath, and ShiftScale.

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkMRMLDiffusionTensorVolumeDisplayNode ( const vtkMRMLDiffusionTensorVolumeDisplayNode & ) [protected]

Member Function Documentation

void vtkMRMLDiffusionTensorVolumeDisplayNode::AddSliceGlyphDisplayNodes ( vtkMRMLVolumeNode * node ) [virtual]

add slice glyph display nodes if not already present and return it

References vtkMRMLDisplayableNode::AddAndObserveDisplayNodeID(), vtkMRMLScene::AddNode(), vtkMRMLNode::EndModify(), vtkMRMLNode::GetScene(), GetSliceGlyphDisplayNodes(), New(), vtkMRMLDisplayNode::SetAndObserveColorNodeID(), vtkMRMLDiffusionTensorVolumeSliceDisplayNode::SetAndObserveDiffusionTensorDisplayPropertiesNodeID(), vtkMRMLDiffusionTensorDisplayPropertiesNode::SetLineGlyphResolution(), and vtkMRMLNode::StartModify().

void vtkMRMLDiffusionTensorVolumeDisplayNode::Copy ( vtkMRMLNode * node ) [virtual]

Copy the node's attributes to this object

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References vtkMRMLNode::EndModify(), ScalarInvariant, and vtkMRMLNode::StartModify().

vtkMRMLNode * vtkMRMLDiffusionTensorVolumeDisplayNode::CreateNodeInstance ( ) [virtual]

Create instance of the default node. Like New only virtual NOTE: Subclasses should implement this method

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References autoSlicerTracto2regions::ret.

vtkImageData * vtkMRMLDiffusionTensorVolumeDisplayNode::GetImageData ( ) [virtual]

Gets ImageData converted from the real data in the node

Reimplemented from vtkMRMLScalarVolumeDisplayNode.

References vtkMRMLScalarVolumeDisplayNode::AppendComponents, DTIMathematics, and UpdateImageDataPipeline().

virtual const char* vtkMRMLDiffusionTensorVolumeDisplayNode::GetNodeTagName ( ) [inline, virtual]

Get node XML tag name (like Volume, Model)

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

virtual const char* vtkMRMLDiffusionTensorVolumeDisplayNode::GetScalarInvariantAsString ( ) [inline, virtual]

Return a text string describing the ScalarInvariant variable

References vtkMRMLDiffusionTensorDisplayPropertiesNode::GetScalarEnumAsString().

Referenced by vtkSlicerDiffusionTensorVolumeDisplayWidget::UpdateWidgetFromMRML().

std::vector< vtkMRMLGlyphableVolumeSliceDisplayNode * > vtkMRMLDiffusionTensorVolumeDisplayNode::GetSliceGlyphDisplayNodes ( vtkMRMLVolumeNode * node ) [virtual]

get associated slice glyph display node or NULL if not set

References vtkMRMLDisplayableNode::GetNthDisplayNode(), vtkMRMLDisplayableNode::GetNumberOfDisplayNodes(), and mathExample::n.

Referenced by AddSliceGlyphDisplayNodes(), vtkSlicerDiffusionTestingWidget::CreateGlyphs(), vtkSlicerDiffusionTensorVolumeGlyphDisplayWidget::SetDiffusionTensorVolumeNode(), and vtkSlicerDiffusionTestingWidget::UpdateGlyphSpacing().

vtkMRMLDiffusionTensorVolumeDisplayNode * vtkMRMLDiffusionTensorVolumeDisplayNode::New ( ) [static]

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References autoSlicerTracto2regions::ret.

Referenced by AddSliceGlyphDisplayNodes(), and vtkMRMLDiffusionTensorVolumeDisplayNode().

void vtkMRMLDiffusionTensorVolumeDisplayNode::operator= ( const vtkMRMLDiffusionTensorVolumeDisplayNode & ) [protected]

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

void vtkMRMLDiffusionTensorVolumeDisplayNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References ScalarInvariant.

void vtkMRMLDiffusionTensorVolumeDisplayNode::ProcessMRMLEvents	(	vtkObject *	caller,
		unsigned long	event,
		void *	callData
	)			`[virtual]`

alternative method to propagate events generated in Display nodes

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

void vtkMRMLDiffusionTensorVolumeDisplayNode::ReadXMLAttributes ( const char ** atts ) [virtual]

Set node attributes

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References vtkMRMLNode::EndModify(), and vtkMRMLNode::StartModify().

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetImageData ( vtkImageData * imageData ) [virtual]

Display Information.

MRML nodes that are observed Sets vtkImageData to be converted to displayable vtkImageData

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References DTIMathematics, and DTIMathematicsAlpha.

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToFractionalAnisotropy ( ) [inline]

Set scalar invariant to FA (normalized variance of eigenvalues)

References vtkMRMLDiffusionTensorDisplayPropertiesNode::FractionalAnisotropy.

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToLinearMeasure ( ) [inline]

Set scalar invariant to C_L (Westin's linear measure)

References vtkMRMLDiffusionTensorDisplayPropertiesNode::LinearMeasure.

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToPlanarMeasure ( ) [inline]

Set scalar invariant to C_P (Westin's planar measure)

References vtkMRMLDiffusionTensorDisplayPropertiesNode::PlanarMeasure.

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToRelativeAnisotropy ( ) [inline]

Set scalar invariant to relative anisotropy.

References vtkMRMLDiffusionTensorDisplayPropertiesNode::RelativeAnisotropy.

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToSphericalMeasure ( ) [inline]

Set scalar invariant to C_S (Westin's spherical measure)

References vtkMRMLDiffusionTensorDisplayPropertiesNode::SphericalMeasure.

void vtkMRMLDiffusionTensorVolumeDisplayNode::SetScalarInvariantToTrace ( ) [inline]

Set scalar invariant to trace (sum of eigenvalues).

References vtkMRMLDiffusionTensorDisplayPropertiesNode::Trace.

void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateImageDataPipeline ( ) [virtual]

Update the pipeline based on this node attributes

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References vtkMRMLScalarVolumeDisplayNode::AlphaLogic, vtkMRMLScalarVolumeDisplayNode::AppendComponents, vtkMRMLDiffusionTensorDisplayPropertiesNode::ColorMode, vtkMRMLDiffusionTensorDisplayPropertiesNode::ColorOrientation, vtkMRMLDiffusionTensorDisplayPropertiesNode::ColorOrientationMiddleEigenvector, vtkMRMLDiffusionTensorDisplayPropertiesNode::ColorOrientationMinEigenvector, DTIMathematics, DTIMathematicsAlpha, ExtractComponents, vtkMRMLDiffusionTensorDisplayPropertiesNode::FractionalAnisotropy, ImageCast, ImageMath, vtkMRMLScalarVolumeDisplayNode::Level, vtkMRMLScalarVolumeDisplayNode::MapToColors, vtkMRMLScalarVolumeDisplayNode::MapToWindowLevelColors, min, ShiftScale, vtkMRMLScalarVolumeDisplayNode::Threshold, and vtkMRMLScalarVolumeDisplayNode::Window.

Referenced by GetImageData().

void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateReferenceID	(	const char *	oldID,
		const char *	newID
	)			`[virtual]`

Update the stored reference to another node in the scene

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateReferences ( ) [virtual]

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

void vtkMRMLDiffusionTensorVolumeDisplayNode::UpdateScene ( vtkMRMLScene * scene ) [virtual]

Finds the storage node and read the data

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkGetMacro	(	ScalarInvariant	,
		int
	)

Get type of scalar invariant (tensor-derived scalar, invariant to tensor rotation) selected for display.

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkGetObjectMacro	(	ShiftScale	,
		vtkImageShiftScale
	)

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkGetObjectMacro	(	DTIMathematicsAlpha	,
		vtkDiffusionTensorMathematicsSimple
	)

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkGetObjectMacro	(	DTIMathematics	,
		vtkDiffusionTensorMathematicsSimple
	)

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkSetMacro	(	ScalarInvariant	,
		int
	)

Get type of scalar invariant (tensor-derived scalar, invariant to tensor rotation) selected for display.

vtkMRMLDiffusionTensorVolumeDisplayNode::vtkTypeMacro	(	vtkMRMLDiffusionTensorVolumeDisplayNode	,
		vtkMRMLGlyphableVolumeDisplayNode
	)

void vtkMRMLDiffusionTensorVolumeDisplayNode::WriteXML	(	ostream &	of,
		int	indent
	)			`[virtual]`

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLGlyphableVolumeDisplayNode.

References ScalarInvariant.

Member Data Documentation

vtkDiffusionTensorGlyph* vtkMRMLDiffusionTensorVolumeDisplayNode::DiffusionTensorGlyphFilter [protected]

Referenced by vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

vtkDiffusionTensorMathematicsSimple* vtkMRMLDiffusionTensorVolumeDisplayNode::DTIMathematics [protected]

used for main scalar invarant (can be 1 or 3 component)

Referenced by GetImageData(), SetImageData(), UpdateImageDataPipeline(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

vtkDiffusionTensorMathematicsSimple* vtkMRMLDiffusionTensorVolumeDisplayNode::DTIMathematicsAlpha [protected]

used for calculating single component magnitude for color images

Referenced by SetImageData(), UpdateImageDataPipeline(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

vtkImageExtractComponents* vtkMRMLDiffusionTensorVolumeDisplayNode::ExtractComponents [protected]

Referenced by UpdateImageDataPipeline(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

vtkImageCast* vtkMRMLDiffusionTensorVolumeDisplayNode::ImageCast [protected]

Referenced by UpdateImageDataPipeline(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

vtkImageMathematics* vtkMRMLDiffusionTensorVolumeDisplayNode::ImageMath [protected]

Referenced by UpdateImageDataPipeline(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

int vtkMRMLDiffusionTensorVolumeDisplayNode::ScalarInvariant [protected]

Scalar display parameters.

Referenced by Copy(), PrintSelf(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and WriteXML().

vtkImageShiftScale* vtkMRMLDiffusionTensorVolumeDisplayNode::ShiftScale [protected]

Referenced by UpdateImageDataPipeline(), vtkMRMLDiffusionTensorVolumeDisplayNode(), and ~vtkMRMLDiffusionTensorVolumeDisplayNode().

The documentation for this class was generated from the following files:

Libs/MRML/vtkMRMLDiffusionTensorVolumeDisplayNode.h
Libs/MRML/vtkMRMLDiffusionTensorVolumeDisplayNode.cxx

vtkMRMLDiffusionTensorVolumeDisplayNode Class Reference

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation