vtkMRMLDiffusionWeightedVolumeNode Class Reference

#include <vtkMRMLDiffusionWeightedVolumeNode.h>

Inheritance diagram for vtkMRMLDiffusionWeightedVolumeNode:

Public Member Functions
virtual void	CalculateAutoLevels (vtkMRMLScalarVolumeDisplayNode refNode=NULL, vtkImageData refData=NULL)
virtual void	Copy (vtkMRMLNode *node)
virtual vtkMRMLStorageNode *	CreateDefaultStorageNode ()
virtual vtkMRMLNode *	CreateNodeInstance ()
	MRMLNode methods.
double	GetBValue (int val)
	Work around issue that GetBValue is defined as a macro in windows.h.
void	GetDiffusionGradient (int val, double g[3])
double *	GetDiffusionGradient (int val)
virtual vtkMRMLDiffusionWeightedVolumeDisplayNode *	GetDiffusionWeightedVolumeDisplayNode ()
void	GetMeasurementFrameMatrix (vtkMatrix4x4 *mat)
void	GetMeasurementFrameMatrix (double mf[3][3])
virtual const char *	GetNodeTagName ()
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	ReadXMLAttributes (const char **atts)
void	SetBValue (int val, const double b)
void	SetBValues (vtkDoubleArray *bValue)
void	SetDiffusionGradient (int val, const double g[3])
void	SetDiffusionGradients (vtkDoubleArray *grad)
void	SetMeasurementFrameMatrix (vtkMatrix4x4 *mat)
void	SetMeasurementFrameMatrix (const double xr, const double xa, const double xs, const double yr, const double ya, const double ys, const double zr, const double za, const double zs)
void	SetMeasurementFrameMatrix (const double mf[3][3])
void	SetNumberOfGradients (int val)
virtual void	UpdateFromMRML ()
	vtkGetMacro (NumberOfGradients, int)
	vtkGetObjectMacro (BValues, vtkDoubleArray)
	vtkGetObjectMacro (DiffusionGradients, vtkDoubleArray)
	vtkTypeMacro (vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLScalarVolumeNode)
virtual void	WriteXML (ostream &of, int indent)
Static Public Member Functions
static vtkMRMLDiffusionWeightedVolumeNode *	New ()
Protected Member Functions
void	operator= (const vtkMRMLDiffusionWeightedVolumeNode &)
	vtkMRMLDiffusionWeightedVolumeNode (const vtkMRMLDiffusionWeightedVolumeNode &)
	vtkMRMLDiffusionWeightedVolumeNode ()
	~vtkMRMLDiffusionWeightedVolumeNode ()
Protected Attributes
vtkDoubleArray *	BValues
vtkDoubleArray *	DiffusionGradients
vtkImageExtractComponents *	ExtractComponents
double	MeasurementFrameMatrix [3][3]
int	NumberOfGradients

Constructor & Destructor Documentation

vtkMRMLDiffusionWeightedVolumeNode::vtkMRMLDiffusionWeightedVolumeNode ( ) [protected]

References BValues, DiffusionGradients, ExtractComponents, j, MeasurementFrameMatrix, New(), and NumberOfGradients.

vtkMRMLDiffusionWeightedVolumeNode::~vtkMRMLDiffusionWeightedVolumeNode ( ) [protected]

References BValues, DiffusionGradients, and ExtractComponents.

vtkMRMLDiffusionWeightedVolumeNode::vtkMRMLDiffusionWeightedVolumeNode ( const vtkMRMLDiffusionWeightedVolumeNode & ) [protected]

Member Function Documentation

void vtkMRMLDiffusionWeightedVolumeNode::CalculateAutoLevels	(	vtkMRMLScalarVolumeDisplayNode *	refNode = `NULL`,
		vtkImageData *	refData = `NULL`
	)			`[virtual]`

Extract the diffusion component and pass it to CalculateScalarAutoLevel

Reimplemented from vtkMRMLScalarVolumeNode.

References vtkMRMLScalarVolumeNode::CalculateScalarAutoLevels(), ExtractComponents, vtkMRMLDisplayableNode::GetDisplayNode(), vtkMRMLVolumeNode::ImageData, and New().

Referenced by UpdateFromMRML().

void vtkMRMLDiffusionWeightedVolumeNode::Copy ( vtkMRMLNode * node ) [virtual]

Copy the node's attributes to this object

Reimplemented from vtkMRMLScalarVolumeNode.

References BValues, DiffusionGradients, vtkMRMLNode::EndModify(), j, MeasurementFrameMatrix, NumberOfGradients, and vtkMRMLNode::StartModify().

Referenced by vtkSlicerDiffusionEditorLogic::SaveStateForUndoRedo().

virtual vtkMRMLStorageNode* vtkMRMLDiffusionWeightedVolumeNode::CreateDefaultStorageNode ( ) [inline, virtual]

Create default storage node or NULL if does not have one

Reimplemented from vtkMRMLScalarVolumeNode.

References vtkMRMLNRRDStorageNode::New().

vtkMRMLNode * vtkMRMLDiffusionWeightedVolumeNode::CreateNodeInstance ( ) [virtual]

MRMLNode methods.

Reimplemented from vtkMRMLScalarVolumeNode.

References autoSlicerTracto2regions::ret.

double vtkMRMLDiffusionWeightedVolumeNode::GetBValue ( int val )

Work around issue that GetBValue is defined as a macro in windows.h.

References BValues.

Referenced by itk::MRMLIDImageIO::SetDWDictionaryValues().

void vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionGradient	(	int	val,
		double	g[3]
	)

References DiffusionGradients.

double * vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionGradient ( int val )

References DiffusionGradients.

Referenced by itk::MRMLIDImageIO::SetDWDictionaryValues().

virtual vtkMRMLDiffusionWeightedVolumeDisplayNode* vtkMRMLDiffusionWeightedVolumeNode::GetDiffusionWeightedVolumeDisplayNode ( ) [inline, virtual]

Associated display MRML node

References vtkMRMLDisplayableNode::GetDisplayNode().

void vtkMRMLDiffusionWeightedVolumeNode::GetMeasurementFrameMatrix ( vtkMatrix4x4 * mat )

References j, and MeasurementFrameMatrix.

void vtkMRMLDiffusionWeightedVolumeNode::GetMeasurementFrameMatrix ( double mf[3][3] )

References j, and MeasurementFrameMatrix.

Referenced by itk::MRMLIDImageIO::SetDWDictionaryValues(), vtkSlicerDiffusionEditorLogic::UpdateActiveVolumeNode(), and vtkSlicerMeasurementFrameWidget::UpdateWidget().

virtual const char* vtkMRMLDiffusionWeightedVolumeNode::GetNodeTagName ( ) [inline, virtual]

Get node XML tag name (like Volume, Model)

Reimplemented from vtkMRMLScalarVolumeNode.

vtkMRMLDiffusionWeightedVolumeNode * vtkMRMLDiffusionWeightedVolumeNode::New ( ) [static]

Reimplemented from vtkMRMLScalarVolumeNode.

References autoSlicerTracto2regions::ret.

Referenced by CalculateAutoLevels(), and vtkMRMLDiffusionWeightedVolumeNode().

void vtkMRMLDiffusionWeightedVolumeNode::operator= ( const vtkMRMLDiffusionWeightedVolumeNode & ) [protected]

Reimplemented from vtkMRMLScalarVolumeNode.

void vtkMRMLDiffusionWeightedVolumeNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkMRMLScalarVolumeNode.

References BValues, DiffusionGradients, j, k, and MeasurementFrameMatrix.

void vtkMRMLDiffusionWeightedVolumeNode::ReadXMLAttributes ( const char ** atts ) [virtual]

Set node attributes

Reimplemented from vtkMRMLScalarVolumeNode.

References BValues, DiffusionGradients, vtkMRMLNode::EndModify(), j, MeasurementFrameMatrix, NumberOfGradients, vtkMRMLNode::StartModify(), and ModifyHeader::val.

void vtkMRMLDiffusionWeightedVolumeNode::SetBValue	(	int	val,
		const double	b
	)

References BValues, and vtkMRMLNode::Modified().

Referenced by itk::MRMLIDImageIO::SetDWNodeValues().

void vtkMRMLDiffusionWeightedVolumeNode::SetBValues ( vtkDoubleArray * bValue )

References BValues, and vtkMRMLNode::Modified().

Referenced by vtkSlicerDiffusionEditorLogic::AddGradients(), vtkSlicerGradientsWidget::SaveGradients(), and vtkSlicerDiffusionEditorLogic::UpdateActiveVolumeNode().

void vtkMRMLDiffusionWeightedVolumeNode::SetDiffusionGradient	(	int	val,
		const double	g[3]
	)

References DiffusionGradients, and vtkMRMLNode::Modified().

Referenced by itk::MRMLIDImageIO::SetDWNodeValues().

void vtkMRMLDiffusionWeightedVolumeNode::SetDiffusionGradients ( vtkDoubleArray * grad )

References DiffusionGradients, vtkMRMLNode::Modified(), and NumberOfGradients.

Referenced by vtkSlicerDiffusionEditorLogic::AddGradients(), vtkSlicerGradientsWidget::SaveGradients(), and vtkSlicerDiffusionEditorLogic::UpdateActiveVolumeNode().

void vtkMRMLDiffusionWeightedVolumeNode::SetMeasurementFrameMatrix ( vtkMatrix4x4 * mat )

References j, and MeasurementFrameMatrix.

void vtkMRMLDiffusionWeightedVolumeNode::SetMeasurementFrameMatrix	(	const double	xr,
		const double	xa,
		const double	xs,
		const double	yr,
		const double	ya,
		const double	ys,
		const double	zr,
		const double	za,
		const double	zs
	)

References MeasurementFrameMatrix.

void vtkMRMLDiffusionWeightedVolumeNode::SetMeasurementFrameMatrix ( const double mf[3][3] )

Set/Get measurement frame that relates the coordinate system where the tensor measurements are given with the RAS coordinate system

References j, and MeasurementFrameMatrix.

Referenced by vtkSlicerMeasurementFrameWidget::SaveMatrix(), itk::MRMLIDImageIO::SetDWNodeValues(), and vtkSlicerDiffusionEditorLogic::UpdateActiveVolumeNode().

void vtkMRMLDiffusionWeightedVolumeNode::SetNumberOfGradients ( int val )

References BValues, DiffusionGradients, vtkMRMLNode::Modified(), and NumberOfGradients.

Referenced by itk::MRMLIDImageIO::SetDWNodeValues().

void vtkMRMLDiffusionWeightedVolumeNode::UpdateFromMRML ( ) [virtual]

Call CalculateAutoLevels

Reimplemented from vtkMRMLScalarVolumeNode.

References CalculateAutoLevels().

vtkMRMLDiffusionWeightedVolumeNode::vtkGetMacro	(	NumberOfGradients	,
		int
	)

vtkMRMLDiffusionWeightedVolumeNode::vtkGetObjectMacro	(	BValues	,
		vtkDoubleArray
	)

vtkMRMLDiffusionWeightedVolumeNode::vtkGetObjectMacro	(	DiffusionGradients	,
		vtkDoubleArray
	)

vtkMRMLDiffusionWeightedVolumeNode::vtkTypeMacro	(	vtkMRMLDiffusionWeightedVolumeNode	,
		vtkMRMLScalarVolumeNode
	)

void vtkMRMLDiffusionWeightedVolumeNode::WriteXML	(	ostream &	of,
		int	indent
	)			`[virtual]`

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLScalarVolumeNode.

References BValues, DiffusionGradients, j, k, and MeasurementFrameMatrix.

Member Data Documentation

vtkDoubleArray* vtkMRMLDiffusionWeightedVolumeNode::BValues [protected]

Referenced by Copy(), GetBValue(), PrintSelf(), ReadXMLAttributes(), SetBValue(), SetBValues(), SetNumberOfGradients(), vtkMRMLDiffusionWeightedVolumeNode(), WriteXML(), and ~vtkMRMLDiffusionWeightedVolumeNode().

vtkDoubleArray* vtkMRMLDiffusionWeightedVolumeNode::DiffusionGradients [protected]

Referenced by Copy(), GetDiffusionGradient(), PrintSelf(), ReadXMLAttributes(), SetDiffusionGradient(), SetDiffusionGradients(), SetNumberOfGradients(), vtkMRMLDiffusionWeightedVolumeNode(), WriteXML(), and ~vtkMRMLDiffusionWeightedVolumeNode().

vtkImageExtractComponents* vtkMRMLDiffusionWeightedVolumeNode::ExtractComponents [protected]

Referenced by CalculateAutoLevels(), vtkMRMLDiffusionWeightedVolumeNode(), and ~vtkMRMLDiffusionWeightedVolumeNode().

double vtkMRMLDiffusionWeightedVolumeNode::MeasurementFrameMatrix[3][3] [protected]

Referenced by Copy(), GetMeasurementFrameMatrix(), PrintSelf(), ReadXMLAttributes(), SetMeasurementFrameMatrix(), vtkMRMLDiffusionWeightedVolumeNode(), and WriteXML().

int vtkMRMLDiffusionWeightedVolumeNode::NumberOfGradients [protected]

Referenced by Copy(), ReadXMLAttributes(), SetDiffusionGradients(), SetNumberOfGradients(), and vtkMRMLDiffusionWeightedVolumeNode().

The documentation for this class was generated from the following files:

Libs/MRML/vtkMRMLDiffusionWeightedVolumeNode.h
Libs/MRML/vtkMRMLDiffusionWeightedVolumeNode.cxx

vtkMRMLDiffusionWeightedVolumeNode Class Reference

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation