vtkMRMLEMSTreeParametersLeafNode Class Reference

#include <vtkMRMLEMSTreeParametersLeafNode.h>

Inheritance diagram for vtkMRMLEMSTreeParametersLeafNode:

List of all members.

Public Types
enum	{ DistributionSpecificationManual = 0, DistributionSpecificationManuallySample, DistributionSpecificationAutoSample }
Public Member Functions
virtual void	AddSamplePoint (double xyz[3])
virtual void	AddTargetInputChannel ()
virtual void	ClearSamplePoints ()
virtual void	Copy (vtkMRMLNode *node)
virtual vtkMRMLNode *	CreateNodeInstance ()
vtkstd::vector< vtkstd::vector < double > >	GetLogCovariance ()
virtual double	GetLogCovariance (int row, int column) const
vtkstd::vector< vtkstd::vector < double > >	GetLogCovarianceCorrection ()
virtual double	GetLogCovarianceCorrection (int row, int column) const
virtual double	GetLogMean (int index) const
virtual double	GetLogMeanCorrection (int index) const
virtual const char *	GetNodeTagName ()
virtual void	GetNthSamplePoint (int n, double xyz[3]) const
virtual int	GetNumberOfSamplePoints () const
virtual void	MoveNthTargetInputChannel (int fromIndex, int toIndex)
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	ReadXMLAttributes (const char **atts)
virtual void	RemoveNthSamplePoint (int n)
virtual void	RemoveNthTargetInputChannel (int index)
virtual void	SetLogCovariance (int row, int column, double value)
virtual void	SetLogCovarianceCorrection (int row, int column, double value)
virtual void	SetLogMean (int index, double value)
virtual void	SetLogMeanCorrection (int index, double value)
virtual void	SetNumberOfTargetInputChannels (unsigned int n)
	vtkGetMacro (DistributionSpecificationMethod, int)
	vtkGetMacro (PrintQuality, int)
	vtkGetMacro (IntensityLabel, int)
	vtkGetMacro (NumberOfTargetInputChannels, unsigned int)
	vtkGetStringMacro (SubParcellationVolumeName)
	vtkSetMacro (DistributionSpecificationMethod, int)
	vtkSetMacro (PrintQuality, int)
	vtkSetMacro (IntensityLabel, int)
	vtkSetStringMacro (SubParcellationVolumeName)
	vtkTypeMacro (vtkMRMLEMSTreeParametersLeafNode, vtkMRMLNode)
virtual void	WriteXML (ostream &of, int indent)
Static Public Member Functions
static vtkMRMLEMSTreeParametersLeafNode *	New ()
Protected Types
typedef vtkstd::vector< double >	PointType
typedef SamplePointListType::const_iterator	SamplePointListConstIterator
typedef SamplePointListType::iterator	SamplePointListIterator
typedef vtkstd::vector< PointType >	SamplePointListType
Protected Member Functions
void	operator= (const vtkMRMLEMSTreeParametersLeafNode &)
	vtkMRMLEMSTreeParametersLeafNode (const vtkMRMLEMSTreeParametersLeafNode &)
	vtkMRMLEMSTreeParametersLeafNode ()
	~vtkMRMLEMSTreeParametersLeafNode ()
Protected Attributes
SamplePointListType	DistributionSamplePointsRAS
int	DistributionSpecificationMethod
int	IntensityLabel
vtkstd::vector< vtkstd::vector < double > >	LogCovariance
vtkstd::vector< vtkstd::vector < double > >	LogCovarianceCorrection
vtkstd::vector< double >	LogMean
vtkstd::vector< double >	LogMeanCorrection
unsigned int	NumberOfTargetInputChannels
int	PrintQuality
char *	SubParcellationVolumeName

---

Member Typedef Documentation

typedef vtkstd::vector<double> vtkMRMLEMSTreeParametersLeafNode::PointType [protected]

typedef SamplePointListType::const_iterator vtkMRMLEMSTreeParametersLeafNode::SamplePointListConstIterator [protected]

typedef SamplePointListType::iterator vtkMRMLEMSTreeParametersLeafNode::SamplePointListIterator [protected]

typedef vtkstd::vector<PointType> vtkMRMLEMSTreeParametersLeafNode::SamplePointListType [protected]

---

Member Enumeration Documentation

anonymous enum

Enumerator:

DistributionSpecificationManual
DistributionSpecificationManuallySample
DistributionSpecificationAutoSample

---

Constructor & Destructor Documentation

vtkMRMLEMSTreeParametersLeafNode::vtkMRMLEMSTreeParametersLeafNode

(

)

[protected]

References DistributionSpecificationMethod, IntensityLabel, LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, NumberOfTargetInputChannels, PrintQuality, and SubParcellationVolumeName.

vtkMRMLEMSTreeParametersLeafNode::~vtkMRMLEMSTreeParametersLeafNode

(

)

[protected]

vtkMRMLEMSTreeParametersLeafNode::vtkMRMLEMSTreeParametersLeafNode

(

const vtkMRMLEMSTreeParametersLeafNode &

)

[protected]

---

Member Function Documentation

void vtkMRMLEMSTreeParametersLeafNode::AddSamplePoint

(

double

xyz[3]

)

[virtual]

References DistributionSamplePointsRAS.

Referenced by vtkEMSegmentMRMLManager::AddTreeNodeDistributionSamplePoint().

void vtkMRMLEMSTreeParametersLeafNode::AddTargetInputChannel

(

)

[virtual]

References LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, and NumberOfTargetInputChannels.

Referenced by vtkMRMLEMSTreeParametersNode::AddTargetInputChannel(), and vtkMRMLEMSTreeNode::AddTargetInputChannel().

void vtkMRMLEMSTreeParametersLeafNode::ClearSamplePoints

(

)

[virtual]

References DistributionSamplePointsRAS.

Referenced by vtkEMSegmentMRMLManager::RemoveAllTreeNodeDistributionSamplePoints().

void vtkMRMLEMSTreeParametersLeafNode::Copy

(

vtkMRMLNode *

node

)

[virtual]

References DistributionSamplePointsRAS, DistributionSpecificationMethod, IntensityLabel, LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, PrintQuality, SetNumberOfTargetInputChannels(), and SubParcellationVolumeName.

vtkMRMLNode * vtkMRMLEMSTreeParametersLeafNode::CreateNodeInstance

(

)

[virtual]

Create instance of the default node. Like New only virtual NOTE: Subclasses should implement this method

Implements vtkMRMLNode.

References autoSlicerTracto2regions::ret.

vtkstd::vector<vtkstd::vector<double> > vtkMRMLEMSTreeParametersLeafNode::GetLogCovariance

(

)

[inline]

double vtkMRMLEMSTreeParametersLeafNode::GetLogCovariance	(	int	row,
		int	column
	)			const [virtual]

References LogCovariance.

Referenced by vtkEMSegmentMRMLManager::GetTreeNodeDistributionLogCovariance(), vtkEMSegmentMRMLManager::GetTreeNodeDistributionLogCovarianceWithCorrection(), vtkEMSegmentMRMLManager::IsTreeNodeDistributionLogCovarianceWithCorrectionInvertableAndSemiDefinite(), and vtkEMSegmentMRMLManager::SetTreeNodeDistributionLogCovarianceWithCorrection().

vtkstd::vector<vtkstd::vector<double> > vtkMRMLEMSTreeParametersLeafNode::GetLogCovarianceCorrection

(

)

[inline]

double vtkMRMLEMSTreeParametersLeafNode::GetLogCovarianceCorrection	(	int	row,
		int	column
	)			const [virtual]

References LogCovarianceCorrection.

Referenced by vtkEMSegmentMRMLManager::GetTreeNodeDistributionLogCovarianceCorrection(), vtkEMSegmentMRMLManager::GetTreeNodeDistributionLogCovarianceWithCorrection(), and vtkEMSegmentMRMLManager::IsTreeNodeDistributionLogCovarianceWithCorrectionInvertableAndSemiDefinite().

double vtkMRMLEMSTreeParametersLeafNode::GetLogMean

(

int

index

)

const [virtual]

References LogMean.

Referenced by vtkEMSegmentMRMLManager::GetTreeNodeDistributionLogMean().

double vtkMRMLEMSTreeParametersLeafNode::GetLogMeanCorrection

(

int

index

)

const [virtual]

References LogMeanCorrection.

Referenced by vtkEMSegmentMRMLManager::GetTreeNodeDistributionLogMeanCorrection().

virtual const char* vtkMRMLEMSTreeParametersLeafNode::GetNodeTagName

(

)

[inline, virtual]

Get node XML tag name (like Volume, Model) NOTE: Subclasses should implement this method

Implements vtkMRMLNode.

void vtkMRMLEMSTreeParametersLeafNode::GetNthSamplePoint	(	int	n,
		double	xyz[3]
	)			const [virtual]

References DistributionSamplePointsRAS.

Referenced by vtkEMSegmentMRMLManager::GetTreeNodeDistributionSamplePoint().

int vtkMRMLEMSTreeParametersLeafNode::GetNumberOfSamplePoints

(

)

const [virtual]

References DistributionSamplePointsRAS.

Referenced by vtkEMSegmentMRMLManager::GetTreeNodeDistributionNumberOfSamples().

void vtkMRMLEMSTreeParametersLeafNode::MoveNthTargetInputChannel	(	int	fromIndex,
		int	toIndex
	)			[virtual]

References LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, and NumberOfTargetInputChannels.

Referenced by vtkMRMLEMSTreeParametersNode::MoveNthTargetInputChannel(), and vtkMRMLEMSTreeNode::MoveNthTargetInputChannel().

vtkMRMLEMSTreeParametersLeafNode * vtkMRMLEMSTreeParametersLeafNode::New

(

)

[static]

Reimplemented from vtkMRMLNode.

References autoSlicerTracto2regions::ret.

void vtkMRMLEMSTreeParametersLeafNode::operator=

(

const vtkMRMLEMSTreeParametersLeafNode &

)

[protected]

Reimplemented from vtkMRMLNode.

void vtkMRMLEMSTreeParametersLeafNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkMRMLNode.

References Console::c, DistributionSamplePointsRAS, DistributionSpecificationMethod, IntensityLabel, LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, PrintQuality, and SubParcellationVolumeName.

void vtkMRMLEMSTreeParametersLeafNode::ReadXMLAttributes

(

const char **

atts

)

[virtual]

Set node attributes NOTE: Subclasses should implement this method NOTE: Call this method in the subclass impementation

Reimplemented from vtkMRMLNode.

References Console::c, autoSlicerTracto2regions::d, DistributionSamplePointsRAS, DistributionSpecificationMethod, IntensityLabel, LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, PrintQuality, SetNumberOfTargetInputChannels(), and ModifyHeader::val.

void vtkMRMLEMSTreeParametersLeafNode::RemoveNthSamplePoint

(

int

n

)

[virtual]

References DistributionSamplePointsRAS.

Referenced by vtkEMSegmentMRMLManager::RemoveTreeNodeDistributionSamplePoint().

void vtkMRMLEMSTreeParametersLeafNode::RemoveNthTargetInputChannel

(

int

index

)

[virtual]

References LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, and NumberOfTargetInputChannels.

Referenced by vtkMRMLEMSTreeParametersNode::RemoveNthTargetInputChannel(), and vtkMRMLEMSTreeNode::RemoveNthTargetInputChannel().

void vtkMRMLEMSTreeParametersLeafNode::SetLogCovariance	(	int	row,
		int	column,
		double	value
	)			[virtual]

References LogCovariance, and vtkMRMLNode::Modified().

Referenced by vtkEMSegmentMRMLManager::SetTreeNodeDistributionLogCovarianceOffDiagonal(), vtkEMSegmentKWLogic::UpdateIntensityDistributionAuto(), and vtkEMSegmentMRMLManager::UpdateIntensityDistributionFromSample().

void vtkMRMLEMSTreeParametersLeafNode::SetLogCovarianceCorrection	(	int	row,
		int	column,
		double	value
	)			[virtual]

References LogCovarianceCorrection, and vtkMRMLNode::Modified().

Referenced by vtkEMSegmentMRMLManager::ResetTreeNodeDistributionLogCovarianceCorrection(), vtkEMSegmentMRMLManager::SetTreeNodeDistributionLogCovarianceOffDiagonal(), and vtkEMSegmentMRMLManager::SetTreeNodeDistributionLogCovarianceWithCorrection().

void vtkMRMLEMSTreeParametersLeafNode::SetLogMean	(	int	index,
		double	value
	)			[virtual]

References LogMean, and vtkMRMLNode::Modified().

Referenced by vtkEMSegmentMRMLManager::SetTreeNodeDistributionLogMean(), vtkEMSegmentKWLogic::UpdateIntensityDistributionAuto(), and vtkEMSegmentMRMLManager::UpdateIntensityDistributionFromSample().

void vtkMRMLEMSTreeParametersLeafNode::SetLogMeanCorrection	(	int	index,
		double	value
	)			[virtual]

References LogMeanCorrection, and vtkMRMLNode::Modified().

Referenced by vtkEMSegmentMRMLManager::ResetTreeNodeDistributionLogMeanCorrection(), and vtkEMSegmentMRMLManager::SetTreeNodeDistributionLogMeanCorrection().

void vtkMRMLEMSTreeParametersLeafNode::SetNumberOfTargetInputChannels

(

unsigned int

n

)

[virtual]

References LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, and NumberOfTargetInputChannels.

Referenced by Copy(), ReadXMLAttributes(), vtkMRMLEMSTreeParametersNode::SetNumberOfTargetInputChannels(), and vtkMRMLEMSTreeNode::SetNumberOfTargetInputChannels().

vtkMRMLEMSTreeParametersLeafNode::vtkGetMacro	(	DistributionSpecificationMethod	,
		int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkGetMacro	(	PrintQuality	,
		int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkGetMacro	(	IntensityLabel	,
		int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkGetMacro	(	NumberOfTargetInputChannels	,
		unsigned	int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkGetStringMacro

(

SubParcellationVolumeName

)

vtkMRMLEMSTreeParametersLeafNode::vtkSetMacro	(	DistributionSpecificationMethod	,
		int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkSetMacro	(	PrintQuality	,
		int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkSetMacro	(	IntensityLabel	,
		int
	)

vtkMRMLEMSTreeParametersLeafNode::vtkSetStringMacro

(

SubParcellationVolumeName

)

vtkMRMLEMSTreeParametersLeafNode::vtkTypeMacro	(	vtkMRMLEMSTreeParametersLeafNode	,
		vtkMRMLNode
	)

void vtkMRMLEMSTreeParametersLeafNode::WriteXML	(	ostream &	of,
		int	indent
	)			[virtual]

Write this node's information to a MRML file in XML format. NOTE: Subclasses should implement this method NOTE: Call this method in the subclass impementation

Reimplemented from vtkMRMLNode.

References Console::c, DistributionSamplePointsRAS, DistributionSpecificationMethod, IntensityLabel, LogCovariance, LogCovarianceCorrection, LogMean, LogMeanCorrection, PrintQuality, and SubParcellationVolumeName.

---

Member Data Documentation

SamplePointListType vtkMRMLEMSTreeParametersLeafNode::DistributionSamplePointsRAS [protected]

Referenced by AddSamplePoint(), ClearSamplePoints(), Copy(), GetNthSamplePoint(), GetNumberOfSamplePoints(), PrintSelf(), ReadXMLAttributes(), RemoveNthSamplePoint(), and WriteXML().

int vtkMRMLEMSTreeParametersLeafNode::DistributionSpecificationMethod [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

int vtkMRMLEMSTreeParametersLeafNode::IntensityLabel [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

vtkstd::vector<vtkstd::vector<double> > vtkMRMLEMSTreeParametersLeafNode::LogCovariance [protected]

Referenced by AddTargetInputChannel(), Copy(), GetLogCovariance(), MoveNthTargetInputChannel(), PrintSelf(), ReadXMLAttributes(), RemoveNthTargetInputChannel(), SetLogCovariance(), SetNumberOfTargetInputChannels(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

vtkstd::vector<vtkstd::vector<double> > vtkMRMLEMSTreeParametersLeafNode::LogCovarianceCorrection [protected]

Referenced by AddTargetInputChannel(), Copy(), GetLogCovarianceCorrection(), MoveNthTargetInputChannel(), PrintSelf(), ReadXMLAttributes(), RemoveNthTargetInputChannel(), SetLogCovarianceCorrection(), SetNumberOfTargetInputChannels(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

vtkstd::vector<double> vtkMRMLEMSTreeParametersLeafNode::LogMean [protected]

Referenced by AddTargetInputChannel(), Copy(), GetLogMean(), MoveNthTargetInputChannel(), PrintSelf(), ReadXMLAttributes(), RemoveNthTargetInputChannel(), SetLogMean(), SetNumberOfTargetInputChannels(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

vtkstd::vector<double> vtkMRMLEMSTreeParametersLeafNode::LogMeanCorrection [protected]

Referenced by AddTargetInputChannel(), Copy(), GetLogMeanCorrection(), MoveNthTargetInputChannel(), PrintSelf(), ReadXMLAttributes(), RemoveNthTargetInputChannel(), SetLogMeanCorrection(), SetNumberOfTargetInputChannels(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

unsigned int vtkMRMLEMSTreeParametersLeafNode::NumberOfTargetInputChannels [protected]

Referenced by AddTargetInputChannel(), MoveNthTargetInputChannel(), RemoveNthTargetInputChannel(), SetNumberOfTargetInputChannels(), and vtkMRMLEMSTreeParametersLeafNode().

int vtkMRMLEMSTreeParametersLeafNode::PrintQuality [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

char* vtkMRMLEMSTreeParametersLeafNode::SubParcellationVolumeName [protected]

Referenced by Copy(), PrintSelf(), vtkMRMLEMSTreeParametersLeafNode(), and WriteXML().

---

The documentation for this class was generated from the following files:

• Modules/EMSegment/MRML/vtkMRMLEMSTreeParametersLeafNode.h
• Modules/EMSegment/MRML/vtkMRMLEMSTreeParametersLeafNode.cxx