vtkMRMLScalarVolumeNode Class Reference

#include <vtkMRMLScalarVolumeNode.h>

Inheritance diagram for vtkMRMLScalarVolumeNode:

List of all members.

Public Member Functions
virtual void	CalculateAutoLevels (vtkMRMLScalarVolumeDisplayNode *refNode=NULL, vtkImageData *refData=NULL)
virtual void	CalculateScalarAutoLevels (vtkMRMLScalarVolumeDisplayNode *refNode=NULL, vtkImageData *imageData=NULL)
void	CalculateStatisticsAutoLevels (vtkMRMLScalarVolumeDisplayNode *refNode=NULL, vtkImageData *imageData=NULL)
virtual void	Copy (vtkMRMLNode *node)
virtual vtkMRMLStorageNode *	CreateDefaultStorageNode ()
virtual vtkMRMLNode *	CreateNodeInstance ()
	MRMLNode methods.
int	GetLabelMap ()
virtual const char *	GetNodeTagName ()
virtual vtkMRMLScalarVolumeDisplayNode *	GetScalarVolumeDisplayNode ()
void	LabelMapOff ()
void	LabelMapOn ()
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	ReadXMLAttributes (const char **atts)
void	SetLabelMap (int)
virtual void	UpdateFromMRML ()
virtual void	UpdateScene (vtkMRMLScene *scene)
	vtkTypeMacro (vtkMRMLScalarVolumeNode, vtkMRMLVolumeNode)
virtual void	WriteXML (ostream &of, int indent)
Static Public Member Functions
static void	CreateNoneNode (vtkMRMLScene *scene)
static vtkMRMLScalarVolumeNode *	New ()
Protected Member Functions
void	operator= (const vtkMRMLScalarVolumeNode &)
	vtkMRMLScalarVolumeNode (const vtkMRMLScalarVolumeNode &)
	vtkMRMLScalarVolumeNode ()
	~vtkMRMLScalarVolumeNode ()
Protected Attributes
vtkImageAccumulateDiscrete *	Accumulate
vtkImageBimodalAnalysis *	Bimodal
int	CalculatingAutoLevels

---

Constructor & Destructor Documentation

vtkMRMLScalarVolumeNode::vtkMRMLScalarVolumeNode

(

)

[protected]

References Accumulate, Bimodal, CalculatingAutoLevels, New(), and vtkMRMLNode::SetAttribute().

vtkMRMLScalarVolumeNode::~vtkMRMLScalarVolumeNode

(

)

[protected]

References Accumulate, and Bimodal.

vtkMRMLScalarVolumeNode::vtkMRMLScalarVolumeNode

(

const vtkMRMLScalarVolumeNode &

)

[protected]

---

Member Function Documentation

virtual void vtkMRMLScalarVolumeNode::CalculateAutoLevels	(	vtkMRMLScalarVolumeDisplayNode *	refNode = NULL,
		vtkImageData *	refData = NULL
	)			[inline, virtual]

Calculate good default viewing parameters, uses input image data if not null, otherwise this node's image data

Reimplemented in vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, and vtkMRMLVectorVolumeNode.

Referenced by vtkSlicerApplicationLogic::ProcessReadNodeData(), and UpdateScene().

void vtkMRMLScalarVolumeNode::CalculateScalarAutoLevels	(	vtkMRMLScalarVolumeDisplayNode *	refNode = NULL,
		vtkImageData *	imageData = NULL
	)			[virtual]

References Accumulate, Bimodal, CalculatingAutoLevels, vtkMRMLNode::EndModify(), GetScalarVolumeDisplayNode(), max, min, New(), and vtkMRMLNode::StartModify().

Referenced by vtkMRMLVectorVolumeNode::CalculateAutoLevels(), vtkMRMLTensorVolumeNode::CalculateAutoLevels(), vtkMRMLDiffusionWeightedVolumeNode::CalculateAutoLevels(), vtkSlicerScalarVolumeDisplayWidget::ProcessWidgetEvents(), and UpdateFromMRML().

void vtkMRMLScalarVolumeNode::CalculateStatisticsAutoLevels	(	vtkMRMLScalarVolumeDisplayNode *	refNode = NULL,
		vtkImageData *	imageData = NULL
	)

Descriptoin: special case for statistics volumes

References Accumulate, Bimodal, vtkMRMLNode::EndModify(), GetScalarVolumeDisplayNode(), New(), vtkMRMLScalarVolumeDisplayNode::SetAutoWindowLevel(), and vtkMRMLNode::StartModify().

void vtkMRMLScalarVolumeNode::Copy

(

vtkMRMLNode *

node

)

[virtual]

Copy the node's attributes to this object

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

References vtkMRMLNode::EndModify(), GetLabelMap(), SetLabelMap(), and vtkMRMLNode::StartModify().

Referenced by vtkFourDImageLogic::AddDisplayBufferNode(), vtkFourDImageLogic::GenerateBundleFrames(), and vtkFourDImageLogic::UpdateDisplayBufferNode().

virtual vtkMRMLStorageNode* vtkMRMLScalarVolumeNode::CreateDefaultStorageNode

(

)

[inline, virtual]

Create default storage node or NULL if does not have one

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, and vtkMRMLVectorVolumeNode.

References vtkMRMLVolumeArchetypeStorageNode::New().

vtkMRMLNode * vtkMRMLScalarVolumeNode::CreateNodeInstance

(

)

[virtual]

MRMLNode methods.

Implements vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

References autoSlicerTracto2regions::ret.

void vtkMRMLScalarVolumeNode::CreateNoneNode

(

vtkMRMLScene *

scene

)

[static]

Make a 'None' volume node with blank image data

References vtkMRMLScene::AddNode(), slicerget::id, mathExample::n, and New().

int vtkMRMLScalarVolumeNode::GetLabelMap

(

)

Indicates if this volume is a label map, which is the output of segmentation that labels each voxel according to its tissue type. The alternative is a gray-level or color image.

References vtkMRMLNode::GetAttribute().

Referenced by vtkCommandLineModuleLogic::ApplyTask(), Copy(), vtkPharmacokineticsGUI::GeneratePlotNodes(), vtkPharmacokineticsGUI::ProcessGUIEvents(), vtkSlicerApplicationLogic::ProcessReadNodeData(), vtkFetchMILogic::SetSlicerDataTypeOnVolumeNodes(), vtkEMSegmentKWLogic::StartSegmentationWithoutPreprocessing(), vtkSlicerVolumesGUI::UpdateFramesFromMRML(), vtkSlicerVolumeHeaderWidget::UpdateWidgetFromMRML(), and WriteXML().

virtual const char* vtkMRMLScalarVolumeNode::GetNodeTagName

(

)

[inline, virtual]

Get node XML tag name (like Volume, Model)

Implements vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

Referenced by vtkKWMimxImportImageGroup::FillModelComboBox().

virtual vtkMRMLScalarVolumeDisplayNode* vtkMRMLScalarVolumeNode::GetScalarVolumeDisplayNode

(

)

[inline, virtual]

Associated display MRML node

References vtkMRMLDisplayableNode::GetDisplayNode().

Referenced by vtkQueryAtlasGUI::AutoWinLevThreshStatisticsVolume(), CalculateScalarAutoLevels(), CalculateStatisticsAutoLevels(), and vtkSlicerVolumeHeaderWidget::UpdateWidgetFromMRML().

void vtkMRMLScalarVolumeNode::LabelMapOff

(

)

References SetLabelMap().

void vtkMRMLScalarVolumeNode::LabelMapOn

(

)

References SetLabelMap().

Referenced by vtkEMSegmentKWLogic::StartSegmentationWithoutPreprocessing().

vtkMRMLScalarVolumeNode * vtkMRMLScalarVolumeNode::New

(

)

[static]

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

References autoSlicerTracto2regions::ret.

Referenced by AddNewScalarArchetypeVolume(), CalculateScalarAutoLevels(), CalculateStatisticsAutoLevels(), CreateNoneNode(), vtkMRMLScalarVolumeNode(), and vtkMRMLVolumeArchetypeStorageNodeTest2().

void vtkMRMLScalarVolumeNode::operator=

(

const vtkMRMLScalarVolumeNode &

)

[protected]

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

void vtkMRMLScalarVolumeNode::PrintSelf	(	ostream &	os,
		vtkIndent	indent
	)

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

void vtkMRMLScalarVolumeNode::ReadXMLAttributes

(

const char **

atts

)

[virtual]

Set node attributes

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

References vtkMRMLNode::EndModify(), SetLabelMap(), vtkMRMLNode::StartModify(), and ModifyHeader::val.

void vtkMRMLScalarVolumeNode::SetLabelMap

(

int

flag

)

References vtkMRMLNode::GetAttribute(), vtkMRMLNode::Modified(), and vtkMRMLNode::SetAttribute().

Referenced by vtkSlicerVolumesLogic::AddArchetypeScalarVolume(), vtkSlicerVolumesLogic::AddHeaderVolume(), AddNewScalarArchetypeVolume(), Copy(), vtkSlicerVolumesLogic::CreateLabelVolume(), vtkIGTLToMRMLImage::CreateNewNode(), vtkEMSegmentLogic::CreateOutputVolumeNode(), LabelMapOff(), LabelMapOn(), and ReadXMLAttributes().

void vtkMRMLScalarVolumeNode::UpdateFromMRML

(

)

[virtual]

Subclasses can define actions to take when the mrml scene passes an event that the image data has changed, usually call CalculateAutoLevels

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionWeightedVolumeNode, and vtkMRMLTensorVolumeNode.

References CalculateScalarAutoLevels().

void vtkMRMLScalarVolumeNode::UpdateScene

(

vtkMRMLScene *

scene

)

[virtual]

Finds the storage node and read the data

Reimplemented from vtkMRMLVolumeNode.

References CalculateAutoLevels().

vtkMRMLScalarVolumeNode::vtkTypeMacro	(	vtkMRMLScalarVolumeNode	,
		vtkMRMLVolumeNode
	)

void vtkMRMLScalarVolumeNode::WriteXML	(	ostream &	of,
		int	indent
	)			[virtual]

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLVolumeNode.

Reimplemented in vtkMRMLDiffusionImageVolumeNode, vtkMRMLDiffusionTensorVolumeNode, vtkMRMLDiffusionWeightedVolumeNode, vtkMRMLTensorVolumeNode, vtkMRMLVectorVolumeNode, and vtkMRMLFiniteElementImageNode.

References GetLabelMap().

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Member Data Documentation

vtkImageAccumulateDiscrete* vtkMRMLScalarVolumeNode::Accumulate [protected]

Used internally in CalculateScalarAutoLevels and CalculateStatisticsAutoLevels

Referenced by CalculateScalarAutoLevels(), CalculateStatisticsAutoLevels(), vtkMRMLScalarVolumeNode(), and ~vtkMRMLScalarVolumeNode().

vtkImageBimodalAnalysis* vtkMRMLScalarVolumeNode::Bimodal [protected]

Referenced by CalculateScalarAutoLevels(), CalculateStatisticsAutoLevels(), vtkMRMLScalarVolumeNode(), and ~vtkMRMLScalarVolumeNode().

int vtkMRMLScalarVolumeNode::CalculatingAutoLevels [protected]

Referenced by CalculateScalarAutoLevels(), and vtkMRMLScalarVolumeNode().

---

The documentation for this class was generated from the following files:

• Libs/MRML/vtkMRMLScalarVolumeNode.h
• Libs/MRML/vtkMRMLScalarVolumeNode.cxx