vtkMRMLTransRectalProstateRobotNode Class Reference

#include <vtkMRMLTransRectalProstateRobotNode.h>

Inheritance diagram for vtkMRMLTransRectalProstateRobotNode:
vtkMRMLRobotNode vtkMRMLTransformableNode vtkMRMLNode vtkObject

List of all members.

Public Member Functions

virtual void ApplyTransform (vtkMatrix4x4 *transformMatrix)
virtual void Copy (vtkMRMLNode *node)
virtual
vtkMRMLTransRectalProstateRobotNode * 		CreateNodeInstance ()
const
TRProstateBiopsyCalibrationData & 		GetCalibrationData ()
vtkMRMLFiducialListNode * GetCalibrationPointListNode ()
vtkMRMLScalarVolumeNode * GetCalibrationVolumeNode ()
double GetMarkerSegmentationThreshold (int i)
virtual bool GetNeedleDirectionAtTarget (vtkProstateNavTargetDescriptor *targetDesc, NeedleDescriptorStruct *needle, double *needleDirection)
virtual const char * GetNodeTagName ()
virtual bool GetRobotBaseTransform (vtkMatrix4x4 *transform)
virtual const char * GetRobotModelId ()
virtual std::string GetTargetInfoText (vtkProstateNavTargetDescriptor *targetDesc, NeedleDescriptorStruct *needle)
virtual const char * GetWorkflowStepsString ()
virtual const char * GetWorkspaceObjectModelId ()
virtual int Init (vtkSlicerApplication *app, const char *moduleShareDir)
void PrintSelf (ostream &os, vtkIndent indent)
virtual void ProcessMRMLEvents (vtkObject *caller, unsigned long event, void *callData)
virtual void ReadXMLAttributes (const char **atts)
void RemoveAllCalibrationMarkers ()
virtual void RemoveChildNodes ()
void ResetCalibrationData ()
void SetAndObserveCalibrationPointListNodeID (const char *childNodeID)
void SetAndObserveCalibrationVolumeNodeID (const char *childNodeID)
void SetCalibrationInputs (const char *calibVolRef, double thresh[CALIB_MARKER_COUNT], double fidDimsMm[3], double radiusMm, double initialAngle, bool enableAutomaticCenterpointAdjustment)
void SetModelAxesVisible (bool visible)
virtual bool ShowRobotAtTarget (vtkProstateNavTargetDescriptor *targetDesc, NeedleDescriptorStruct *needle)
virtual void UpdateReferenceID (const char *oldID, const char *newID)
virtual void UpdateReferences ()
virtual void UpdateScene (vtkMRMLScene *scene)
 vtkGetMacro (RobotInitialAngle, double)
 vtkGetMacro (MarkerRadiusMm, double)
 vtkGetMacro (EnableAutomaticMarkerCenterpointAdjustment, bool)
 vtkGetMacro (ModelAxesVisible, bool)
 vtkGetStringMacro (CalibrationStatusDescription)
 vtkGetStringMacro (CalibrationVolumeNodeID)
 vtkGetStringMacro (CalibrationPointListNodeID)
 vtkGetVectorMacro (MarkerDimensionsMm, double, 3)
 vtkTypeMacro (vtkMRMLTransRectalProstateRobotNode, vtkMRMLRobotNode)
virtual void WriteXML (ostream &of, int indent)

Static Public Member Functions

static
vtkMRMLTransRectalProstateRobotNode * 		New ()

Protected Member Functions

const char * AddModelNode (const char *nodeName, double colorR=0.7, double colorG=0.7, double colorB=0.7)
vtkMRMLModelNode * GetRobotModelNode ()
vtkMRMLModelNode * GetWorkspaceModelNode ()
void operator= (const vtkMRMLTransRectalProstateRobotNode &)
virtual void TransformCalibrationData (vtkMatrix4x4 *transformMatrix)
virtual void TransformRobotModelMarkers (vtkMatrix4x4 *transformMatrix)
void UpdateCalibration ()
void UpdateRobotModel ()
void UpdateRobotModelAxes ()
void UpdateRobotModelMarker (int markerInd, vtkImageData *imagedata, vtkMatrix4x4 *ijkToRAS)
void UpdateRobotModelNeedle (vtkProstateNavTargetDescriptor *targetDesc, NeedleDescriptorStruct *needle)
void UpdateRobotModelProbe ()
void UpdateWorkspaceModel ()
 vtkGetStringMacro (WorkspaceModelNodeRef)
 vtkGetStringMacro (RobotModelNodeRef)
 vtkMRMLTransRectalProstateRobotNode (const vtkMRMLTransRectalProstateRobotNode &)
 vtkMRMLTransRectalProstateRobotNode ()
 vtkSetReferenceStringMacro (CalibrationVolumeNodeID)
 vtkSetReferenceStringMacro (CalibrationPointListNodeID)
 vtkSetReferenceStringMacro (WorkspaceModelNodeRef)
 vtkSetReferenceStringMacro (RobotModelNodeRef)
 vtkSetStringMacro (CalibrationStatusDescription)
virtual ~vtkMRMLTransRectalProstateRobotNode ()

Protected Attributes

TRProstateBiopsyCalibrationData CalibrationData
vtkMRMLFiducialListNode * CalibrationPointListNode
char * CalibrationPointListNodeID
char * CalibrationStatusDescription
vtkMRMLScalarVolumeNode * CalibrationVolumeNode
char * CalibrationVolumeNodeID
bool EnableAutomaticMarkerCenterpointAdjustment
double MarkerDimensionsMm [3]
double MarkerRadiusMm
double MarkerSegmentationThreshold [CALIB_MARKER_COUNT]
vtkPolyData * ModelAxes
bool ModelAxesVisible
vtkPolyData * ModelMarkers [CALIB_MARKER_COUNT]
vtkPolyData * ModelNeedle
vtkPolyData * ModelProbe
double RobotInitialAngle
char * RobotModelNodeRef
char * WorkspaceModelNodeRef

Constructor & Destructor Documentation

vtkMRMLTransRectalProstateRobotNode::vtkMRMLTransRectalProstateRobotNode (  )  [protected]

References CALIB_MARKER_COUNT, CalibrationPointListNode, CalibrationPointListNodeID, CalibrationStatusDescription, CalibrationVolumeNode, CalibrationVolumeNodeID, EnableAutomaticMarkerCenterpointAdjustment, MarkerDimensionsMm, MarkerRadiusMm, MarkerSegmentationThreshold, ModelAxes, ModelAxesVisible, ModelMarkers, ModelNeedle, ModelProbe, New(), ResetCalibrationData(), RobotInitialAngle, RobotModelNodeRef, and WorkspaceModelNodeRef.

vtkMRMLTransRectalProstateRobotNode::~vtkMRMLTransRectalProstateRobotNode (  )  [protected, virtual]

References CALIB_MARKER_COUNT, GetCalibrationPointListNode(), ModelAxes, ModelMarkers, ModelNeedle, ModelProbe, SetAndObserveCalibrationPointListNodeID(), SetAndObserveCalibrationVolumeNodeID(), and vtkMRMLTransformableNode::SetAndObserveTransformNodeID().

vtkMRMLTransRectalProstateRobotNode::vtkMRMLTransRectalProstateRobotNode ( const vtkMRMLTransRectalProstateRobotNode &   )  [protected]

Member Function Documentation

const char * vtkMRMLTransRectalProstateRobotNode::AddModelNode ( const char *  nodeName,
double  colorR = 0.7,
double  colorG = 0.7,
double  colorB = 0.7 
) [protected]

References vtkMRMLScene::AddNode(), New(), and vtkMRMLNode::Scene.

Referenced by Init().

void vtkMRMLTransRectalProstateRobotNode::ApplyTransform ( vtkMatrix4x4 *  transformMatrix  )  [virtual]

Reimplemented from vtkMRMLRobotNode.

References TransformCalibrationData(), and TransformRobotModelMarkers().

void vtkMRMLTransRectalProstateRobotNode::Copy ( vtkMRMLNode *  node  )  [virtual]

Copy the node's attributes to this object

Reimplemented from vtkMRMLRobotNode.

References CALIB_MARKER_COUNT, CalibrationData, CalibrationPointListNodeID, CalibrationVolumeNodeID, EnableAutomaticMarkerCenterpointAdjustment, MarkerDimensionsMm, MarkerRadiusMm, MarkerSegmentationThreshold, ModelAxes, ModelAxesVisible, ModelMarkers, ModelNeedle, ModelProbe, RobotInitialAngle, RobotModelNodeRef, SetAndObserveCalibrationPointListNodeID(), SetAndObserveCalibrationVolumeNodeID(), and WorkspaceModelNodeRef.

vtkMRMLTransRectalProstateRobotNode * vtkMRMLTransRectalProstateRobotNode::CreateNodeInstance (  )  [virtual]

Create instance of the default node. Like New only virtual NOTE: Subclasses should implement this method

Reimplemented from vtkMRMLRobotNode.

References autoSlicerTracto2regions::ret.

const TRProstateBiopsyCalibrationData& vtkMRMLTransRectalProstateRobotNode::GetCalibrationData (  )  [inline]

Referenced by vtkProstateNavFiducialCalibrationStep::PopulateCalibrationResults(), and vtkProstateNavFiducialCalibrationStep::UpdateGUI().

vtkMRMLFiducialListNode * vtkMRMLTransRectalProstateRobotNode::GetCalibrationPointListNode (  ) 

References CalibrationPointListNodeID, vtkMRMLScene::GetNodeByID(), and vtkMRMLNode::GetScene().

Referenced by vtkProstateNavFiducialCalibrationStep::GetCalibrationPointListNode(), vtkProstateNavFiducialCalibrationStep::HideUserInterface(), Init(), RemoveAllCalibrationMarkers(), RemoveChildNodes(), SetAndObserveCalibrationPointListNodeID(), UpdateCalibration(), and ~vtkMRMLTransRectalProstateRobotNode().

vtkMRMLScalarVolumeNode * vtkMRMLTransRectalProstateRobotNode::GetCalibrationVolumeNode (  ) 

References CalibrationVolumeNodeID, vtkMRMLScene::GetNodeByID(), and vtkMRMLNode::GetScene().

Referenced by SetAndObserveCalibrationVolumeNodeID(), and UpdateCalibration().

double vtkMRMLTransRectalProstateRobotNode::GetMarkerSegmentationThreshold ( int  i  ) 

References CALIB_MARKER_COUNT, and MarkerSegmentationThreshold.

Referenced by vtkProstateNavFiducialCalibrationStep::UpdateGUI().

bool vtkMRMLTransRectalProstateRobotNode::GetNeedleDirectionAtTarget ( vtkProstateNavTargetDescriptor *  targetDesc,
NeedleDescriptorStruct *  needle,
double *  needleDirection 
) [virtual]

Reimplemented from vtkMRMLRobotNode.

References CalibrationData, vtkTransRectalFiducialCalibrationAlgo::FindTargetingParams(), TRProstateBiopsyTargetingParams::HingePosition, and TRProstateBiopsyTargetingParams::TargetingParametersValid.

virtual const char* vtkMRMLTransRectalProstateRobotNode::GetNodeTagName (  )  [inline, virtual]

Get node XML tag name (like Volume, Model)

Reimplemented from vtkMRMLRobotNode.

bool vtkMRMLTransRectalProstateRobotNode::GetRobotBaseTransform ( vtkMatrix4x4 *  transform  )  [virtual]

Reimplemented from vtkMRMLRobotNode.

References TRProstateBiopsyCalibrationData::AxesAngleDegrees, CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, zf::Cross(), TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::v1, and TRProstateBiopsyCalibrationData::v2.

Referenced by UpdateRobotModelProbe(), and UpdateWorkspaceModel().

virtual const char* vtkMRMLTransRectalProstateRobotNode::GetRobotModelId (  )  [inline, virtual]

Reimplemented from vtkMRMLRobotNode.

vtkMRMLModelNode * vtkMRMLTransRectalProstateRobotNode::GetRobotModelNode (  )  [protected]

References vtkMRMLNode::GetScene(), and RobotModelNodeRef.

Referenced by Init(), RemoveChildNodes(), and UpdateRobotModel().

std::string vtkMRMLTransRectalProstateRobotNode::GetTargetInfoText ( vtkProstateNavTargetDescriptor *  targetDesc,
NeedleDescriptorStruct *  needle 
) [virtual]

Reimplemented from vtkMRMLRobotNode.

References TRProstateBiopsyTargetingParams::AxisRotation, CalibrationData, TRProstateBiopsyTargetingParams::DepthCM, vtkTransRectalFiducialCalibrationAlgo::FindTargetingParams(), TRProstateBiopsyCalibrationData::FoR, vtkProstateNavTargetDescriptor::GetName(), vtkProstateNavTargetDescriptor::GetRASLocationString(), vtkMRMLRobotNode::GetTargetInfoSectionSeparator(), vtkProstateNavTargetDescriptor::GetTargetingVolumeFoR(), TRProstateBiopsyTargetingParams::IsOutsideReach, NeedleDescriptorStruct::mDescription, TRProstateBiopsyTargetingParams::NeedleAngle, result, and TRProstateBiopsyTargetingParams::TargetingParametersValid.

virtual const char* vtkMRMLTransRectalProstateRobotNode::GetWorkflowStepsString (  )  [inline, virtual]

Reimplemented from vtkMRMLRobotNode.

vtkMRMLModelNode * vtkMRMLTransRectalProstateRobotNode::GetWorkspaceModelNode (  )  [protected]

References vtkMRMLNode::GetScene(), and WorkspaceModelNodeRef.

Referenced by Init(), RemoveChildNodes(), and UpdateWorkspaceModel().

virtual const char* vtkMRMLTransRectalProstateRobotNode::GetWorkspaceObjectModelId (  )  [inline, virtual]

Reimplemented from vtkMRMLRobotNode.

int vtkMRMLTransRectalProstateRobotNode::Init ( vtkSlicerApplication *  app,
const char *  moduleShareDir 
) [virtual]

Reimplemented from vtkMRMLRobotNode.

References AddModelNode(), vtkMRMLScene::AddNode(), GetCalibrationPointListNode(), GetRobotModelNode(), GetWorkspaceModelNode(), New(), vtkMRMLNode::Scene, and SetAndObserveCalibrationPointListNodeID().

vtkMRMLTransRectalProstateRobotNode * vtkMRMLTransRectalProstateRobotNode::New (  )  [static]

Reimplemented from vtkMRMLRobotNode.

References autoSlicerTracto2regions::ret.

Referenced by AddModelNode(), Init(), SetAndObserveCalibrationPointListNodeID(), TransformRobotModelMarkers(), UpdateCalibration(), UpdateRobotModel(), UpdateRobotModelAxes(), UpdateRobotModelMarker(), UpdateRobotModelNeedle(), UpdateRobotModelProbe(), UpdateWorkspaceModel(), and vtkMRMLTransRectalProstateRobotNode().

void vtkMRMLTransRectalProstateRobotNode::operator= ( const vtkMRMLTransRectalProstateRobotNode &   )  [protected]

Reimplemented from vtkMRMLRobotNode.

void vtkMRMLTransRectalProstateRobotNode::PrintSelf ( ostream &  os,
vtkIndent  indent 
)

Reimplemented from vtkMRMLRobotNode.

References TRProstateBiopsyCalibrationData::AxesAngleDegrees, TRProstateBiopsyCalibrationData::AxesDistance, CALIB_MARKER_COUNT, CalibrationData, CalibrationPointListNodeID, TRProstateBiopsyCalibrationData::CalibrationValid, CalibrationVolumeNodeID, EnableAutomaticMarkerCenterpointAdjustment, TRProstateBiopsyCalibrationData::FoR, TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::I2, MarkerDimensionsMm, MarkerRadiusMm, MarkerSegmentationThreshold, ModelAxesVisible, RobotInitialAngle, RobotModelNodeRef, TRProstateBiopsyCalibrationData::RobotRegistrationAngleDegrees, TRProstateBiopsyCalibrationData::v1, TRProstateBiopsyCalibrationData::v2, and WorkspaceModelNodeRef.

void vtkMRMLTransRectalProstateRobotNode::ProcessMRMLEvents ( vtkObject *  ,
unsigned long  long,
void *   
) [virtual]

alternative method to propagate events generated in Transform nodes

Reimplemented from vtkMRMLRobotNode.

References CalibrationPointListNode, CalibrationVolumeNode, vtkMRMLFiducialListNode::DisplayModifiedEvent, vtkMRMLFiducialListNode::FiducialModifiedEvent, vtkMRMLScene::NodeAddedEvent, vtkMRMLScene::NodeRemovedEvent, and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::ReadXMLAttributes ( const char **  atts  )  [virtual]

Read node attributes from XML file

Reimplemented from vtkMRMLRobotNode.

References TRProstateBiopsyCalibrationData::AxesAngleDegrees, TRProstateBiopsyCalibrationData::AxesDistance, CALIB_MARKER_COUNT, CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, EnableAutomaticMarkerCenterpointAdjustment, TRProstateBiopsyCalibrationData::FoR, TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::I2, MarkerDimensionsMm, MarkerRadiusMm, MarkerSegmentationThreshold, ModelAxesVisible, RobotInitialAngle, SetAndObserveCalibrationPointListNodeID(), SetAndObserveCalibrationVolumeNodeID(), TRProstateBiopsyCalibrationData::v1, and TRProstateBiopsyCalibrationData::v2.

void vtkMRMLTransRectalProstateRobotNode::RemoveAllCalibrationMarkers (  ) 

References GetCalibrationPointListNode(), and vtkMRMLFiducialListNode::RemoveAllFiducials().

Referenced by vtkProstateNavFiducialCalibrationStep::Reset().

void vtkMRMLTransRectalProstateRobotNode::RemoveChildNodes (  )  [virtual]

Reimplemented from vtkMRMLRobotNode.

References GetCalibrationPointListNode(), vtkMRMLDisplayableNode::GetDisplayNode(), GetRobotModelNode(), vtkMRMLNode::GetScene(), GetWorkspaceModelNode(), vtkMRMLScene::RemoveNode(), vtkMRMLDisplayableNode::SetAndObserveDisplayNodeID(), and vtkMRMLTransformableNode::SetAndObserveTransformNodeID().

void vtkMRMLTransRectalProstateRobotNode::ResetCalibrationData (  ) 

References TRProstateBiopsyCalibrationData::AxesAngleDegrees, TRProstateBiopsyCalibrationData::AxesDistance, CALIB_MARKER_COUNT, CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::I2, ModelAxes, vtkMRMLNode::Modified(), TRProstateBiopsyCalibrationData::RobotRegistrationAngleDegrees, UpdateRobotModel(), UpdateRobotModelAxes(), UpdateRobotModelMarker(), UpdateRobotModelNeedle(), UpdateRobotModelProbe(), TRProstateBiopsyCalibrationData::v1, and TRProstateBiopsyCalibrationData::v2.

Referenced by vtkProstateNavFiducialCalibrationStep::Reset(), UpdateCalibration(), and vtkMRMLTransRectalProstateRobotNode().

void vtkMRMLTransRectalProstateRobotNode::SetAndObserveCalibrationPointListNodeID ( const char *  childNodeID  ) 

References CalibrationPointListNode, vtkMRMLFiducialListNode::DisplayModifiedEvent, vtkMRMLFiducialListNode::FiducialModifiedEvent, GetCalibrationPointListNode(), New(), vtkMRMLScene::NodeAddedEvent, vtkMRMLScene::NodeRemovedEvent, vtkSetAndObserveMRMLObjectEventsMacro, and vtkSetAndObserveMRMLObjectMacro.

Referenced by Copy(), Init(), ReadXMLAttributes(), UpdateReferenceID(), UpdateReferences(), UpdateScene(), and ~vtkMRMLTransRectalProstateRobotNode().

void vtkMRMLTransRectalProstateRobotNode::SetAndObserveCalibrationVolumeNodeID ( const char *  childNodeID  ) 

References CalibrationVolumeNode, GetCalibrationVolumeNode(), and vtkSetAndObserveMRMLObjectMacro.

Referenced by Copy(), ReadXMLAttributes(), SetCalibrationInputs(), UpdateReferenceID(), UpdateReferences(), UpdateScene(), and ~vtkMRMLTransRectalProstateRobotNode().

void vtkMRMLTransRectalProstateRobotNode::SetCalibrationInputs ( const char *  calibVolRef,
double  thresh[CALIB_MARKER_COUNT],
double  fidDimsMm[3],
double  radiusMm,
double  initialAngle,
bool  enableAutomaticCenterpointAdjustment 
)

References CalibrationVolumeNodeID, EnableAutomaticMarkerCenterpointAdjustment, j, MarkerDimensionsMm, MarkerRadiusMm, MarkerSegmentationThreshold, vtkMRMLNode::Modified(), RobotInitialAngle, SetAndObserveCalibrationVolumeNodeID(), and UpdateCalibration().

Referenced by vtkProstateNavFiducialCalibrationStep::UpdateMRML().

void vtkMRMLTransRectalProstateRobotNode::SetModelAxesVisible ( bool  visible  ) 

References ModelAxesVisible, and UpdateRobotModel().

Referenced by vtkProstateNavFiducialCalibrationStep::HideUserInterface(), and vtkProstateNavFiducialCalibrationStep::ShowAxesIn3DView().

bool vtkMRMLTransRectalProstateRobotNode::ShowRobotAtTarget ( vtkProstateNavTargetDescriptor *  targetDesc,
NeedleDescriptorStruct *  needle 
) [virtual]

Reimplemented from vtkMRMLRobotNode.

References UpdateRobotModel(), and UpdateRobotModelNeedle().

void vtkMRMLTransRectalProstateRobotNode::TransformCalibrationData ( vtkMatrix4x4 *  transformMatrix  )  [protected, virtual]

References CalibrationData, TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::I2, TRProstateBiopsyCalibrationData::v1, and TRProstateBiopsyCalibrationData::v2.

Referenced by ApplyTransform(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::TransformRobotModelMarkers ( vtkMatrix4x4 *  transformMatrix  )  [protected, virtual]

References CALIB_MARKER_COUNT, ModelMarkers, and New().

Referenced by ApplyTransform(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateCalibration (  )  [protected]

References CALIB_MARKER_COUNT, CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, EnableAutomaticMarkerCenterpointAdjustment, TRProstateBiopsyCalibrationFromImageInput::FoR, GetCalibrationPointListNode(), GetCalibrationVolumeNode(), vtkMRMLVolumeNode::GetIJKToRASMatrix(), vtkMRMLTransformNode::GetMatrixTransformToNode(), vtkMRMLTransformNode::GetMatrixTransformToWorld(), vtkMRMLVolumeNode::GetMetaDataDictionary(), vtkMRMLFiducialListNode::GetNthFiducialLabelText(), vtkMRMLFiducialListNode::GetNthFiducialXYZ(), vtkMRMLFiducialListNode::GetNumberOfFiducials(), vtkMRMLTransformableNode::GetParentTransformNode(), MARKER_LABEL_NAMES, MarkerDimensionsMm, TRProstateBiopsyCalibrationFromImageInput::MarkerDimensionsMm, TRProstateBiopsyCalibrationFromImageInput::MarkerInitialPositions, MarkerRadiusMm, TRProstateBiopsyCalibrationFromImageInput::MarkerRadiusMm, MarkerSegmentationThreshold, TRProstateBiopsyCalibrationFromImageInput::MarkerSegmentationThreshold, vtkMRMLNode::Modified(), New(), vtkMRMLFiducialListNode::RemoveFiducial(), ResetCalibrationData(), RobotInitialAngle, TRProstateBiopsyCalibrationFromImageInput::RobotInitialAngle, vtkMRMLFiducialListNode::SetNthFiducialLabelText(), TransformCalibrationData(), TransformRobotModelMarkers(), UpdateRobotModel(), UpdateRobotModelAxes(), UpdateRobotModelMarker(), UpdateRobotModelNeedle(), UpdateRobotModelProbe(), UpdateWorkspaceModel(), TRProstateBiopsyCalibrationFromImageInput::VolumeIJKToRASMatrix, and TRProstateBiopsyCalibrationFromImageInput::VolumeImageData.

Referenced by ProcessMRMLEvents(), SetCalibrationInputs(), and UpdateScene().

void vtkMRMLTransRectalProstateRobotNode::UpdateReferenceID ( const char *  oldID,
const char *  newID 
) [virtual]

Update the stored reference to another node in the scene

Reimplemented from vtkMRMLRobotNode.

References CalibrationPointListNodeID, CalibrationVolumeNodeID, RobotModelNodeRef, SetAndObserveCalibrationPointListNodeID(), SetAndObserveCalibrationVolumeNodeID(), and WorkspaceModelNodeRef.

void vtkMRMLTransRectalProstateRobotNode::UpdateReferences (  )  [virtual]

Updates this node if it depends on other nodes when the node is deleted in the scene

Reimplemented from vtkMRMLRobotNode.

References CalibrationPointListNodeID, CalibrationVolumeNodeID, vtkMRMLScene::GetNodeByID(), RobotModelNodeRef, vtkMRMLNode::Scene, SetAndObserveCalibrationPointListNodeID(), SetAndObserveCalibrationVolumeNodeID(), and WorkspaceModelNodeRef.

void vtkMRMLTransRectalProstateRobotNode::UpdateRobotModel (  )  [protected]

References CALIB_MARKER_COUNT, CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, vtkMRMLDisplayableNode::GetDisplayNode(), GetRobotModelNode(), ModelAxes, ModelAxesVisible, ModelMarkers, ModelNeedle, ModelProbe, New(), and vtkMRMLModelNode::SetAndObservePolyData().

Referenced by ResetCalibrationData(), SetModelAxesVisible(), ShowRobotAtTarget(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateRobotModelAxes (  )  [protected]

References CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::I2, ModelAxes, New(), TRProstateBiopsyCalibrationData::v1, and TRProstateBiopsyCalibrationData::v2.

Referenced by ResetCalibrationData(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateRobotModelMarker ( int  markerInd,
vtkImageData *  imagedata,
vtkMatrix4x4 *  ijkToRAS 
) [protected]

References ModelMarkers, and New().

Referenced by ResetCalibrationData(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateRobotModelNeedle ( vtkProstateNavTargetDescriptor *  targetDesc,
NeedleDescriptorStruct *  needle 
) [protected]

References CalibrationData, vtkTransRectalFiducialCalibrationAlgo::FindTargetingParams(), NeedleDescriptorStruct::GetExtension(), NeedleDescriptorStruct::GetTargetCenter(), TRProstateBiopsyTargetingParams::HingePosition, slicerget::line, NeedleDescriptorStruct::mLength, ModelNeedle, NeedleDescriptorStruct::mTargetLength, New(), and TRProstateBiopsyTargetingParams::TargetingParametersValid.

Referenced by ResetCalibrationData(), ShowRobotAtTarget(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateRobotModelProbe (  )  [protected]

References CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, GetRobotBaseTransform(), ModelProbe, vtkMRMLRobotNode::ModuleShareDirectory, and New().

Referenced by ResetCalibrationData(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateScene ( vtkMRMLScene *  scene  )  [virtual]

Observe the reference transform node

Reimplemented from vtkMRMLRobotNode.

References CalibrationPointListNodeID, CalibrationVolumeNodeID, SetAndObserveCalibrationPointListNodeID(), SetAndObserveCalibrationVolumeNodeID(), and UpdateCalibration().

void vtkMRMLTransRectalProstateRobotNode::UpdateWorkspaceModel (  )  [protected]

References CalibrationData, TRProstateBiopsyCalibrationData::CalibrationValid, vtkMRMLDisplayableNode::GetDisplayNode(), GetRobotBaseTransform(), GetWorkspaceModelNode(), vtkMRMLRobotNode::ModuleShareDirectory, New(), and vtkMRMLModelNode::SetAndObservePolyData().

Referenced by UpdateCalibration().

vtkMRMLTransRectalProstateRobotNode::vtkGetMacro ( RobotInitialAngle  ,
double   
)
vtkMRMLTransRectalProstateRobotNode::vtkGetMacro ( MarkerRadiusMm  ,
double   
)
vtkMRMLTransRectalProstateRobotNode::vtkGetMacro ( EnableAutomaticMarkerCenterpointAdjustment  ,
bool   
)
vtkMRMLTransRectalProstateRobotNode::vtkGetMacro ( ModelAxesVisible  ,
bool   
)
vtkMRMLTransRectalProstateRobotNode::vtkGetStringMacro ( WorkspaceModelNodeRef   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkGetStringMacro ( RobotModelNodeRef   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkGetStringMacro ( CalibrationStatusDescription   ) 
vtkMRMLTransRectalProstateRobotNode::vtkGetStringMacro ( CalibrationVolumeNodeID   ) 
vtkMRMLTransRectalProstateRobotNode::vtkGetStringMacro ( CalibrationPointListNodeID   ) 
vtkMRMLTransRectalProstateRobotNode::vtkGetVectorMacro ( MarkerDimensionsMm  ,
double  ,
3   
)
vtkMRMLTransRectalProstateRobotNode::vtkSetReferenceStringMacro ( CalibrationVolumeNodeID   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkSetReferenceStringMacro ( CalibrationPointListNodeID   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkSetReferenceStringMacro ( WorkspaceModelNodeRef   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkSetReferenceStringMacro ( RobotModelNodeRef   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkSetStringMacro ( CalibrationStatusDescription   )  [protected]
vtkMRMLTransRectalProstateRobotNode::vtkTypeMacro ( vtkMRMLTransRectalProstateRobotNode  ,
vtkMRMLRobotNode   
)
void vtkMRMLTransRectalProstateRobotNode::WriteXML ( ostream &  of,
int  indent 
) [virtual]

Write this node's information to a MRML file in XML format.

Reimplemented from vtkMRMLRobotNode.

References TRProstateBiopsyCalibrationData::AxesAngleDegrees, TRProstateBiopsyCalibrationData::AxesDistance, CALIB_MARKER_COUNT, CalibrationData, CalibrationPointListNodeID, TRProstateBiopsyCalibrationData::CalibrationValid, CalibrationVolumeNodeID, EnableAutomaticMarkerCenterpointAdjustment, TRProstateBiopsyCalibrationData::FoR, TRProstateBiopsyCalibrationData::I1, TRProstateBiopsyCalibrationData::I2, MarkerDimensionsMm, MarkerRadiusMm, MarkerSegmentationThreshold, ModelAxesVisible, RobotInitialAngle, RobotModelNodeRef, TRProstateBiopsyCalibrationData::RobotRegistrationAngleDegrees, TRProstateBiopsyCalibrationData::v1, TRProstateBiopsyCalibrationData::v2, and WorkspaceModelNodeRef.

Member Data Documentation

TRProstateBiopsyCalibrationData vtkMRMLTransRectalProstateRobotNode::CalibrationData [protected]

Referenced by Copy(), GetNeedleDirectionAtTarget(), GetRobotBaseTransform(), GetTargetInfoText(), PrintSelf(), ReadXMLAttributes(), ResetCalibrationData(), TransformCalibrationData(), UpdateCalibration(), UpdateRobotModel(), UpdateRobotModelAxes(), UpdateRobotModelNeedle(), UpdateRobotModelProbe(), UpdateWorkspaceModel(), and WriteXML().

vtkMRMLFiducialListNode* vtkMRMLTransRectalProstateRobotNode::CalibrationPointListNode [protected]

Referenced by ProcessMRMLEvents(), SetAndObserveCalibrationPointListNodeID(), and vtkMRMLTransRectalProstateRobotNode().

char* vtkMRMLTransRectalProstateRobotNode::CalibrationPointListNodeID [protected]

Referenced by Copy(), GetCalibrationPointListNode(), PrintSelf(), UpdateReferenceID(), UpdateReferences(), UpdateScene(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

char* vtkMRMLTransRectalProstateRobotNode::CalibrationStatusDescription [protected]

Referenced by vtkMRMLTransRectalProstateRobotNode().

vtkMRMLScalarVolumeNode* vtkMRMLTransRectalProstateRobotNode::CalibrationVolumeNode [protected]

Referenced by ProcessMRMLEvents(), SetAndObserveCalibrationVolumeNodeID(), and vtkMRMLTransRectalProstateRobotNode().

char* vtkMRMLTransRectalProstateRobotNode::CalibrationVolumeNodeID [protected]

Referenced by Copy(), GetCalibrationVolumeNode(), PrintSelf(), SetCalibrationInputs(), UpdateReferenceID(), UpdateReferences(), UpdateScene(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

bool vtkMRMLTransRectalProstateRobotNode::EnableAutomaticMarkerCenterpointAdjustment [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), SetCalibrationInputs(), UpdateCalibration(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

double vtkMRMLTransRectalProstateRobotNode::MarkerDimensionsMm[3] [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), SetCalibrationInputs(), UpdateCalibration(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

double vtkMRMLTransRectalProstateRobotNode::MarkerRadiusMm [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), SetCalibrationInputs(), UpdateCalibration(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

double vtkMRMLTransRectalProstateRobotNode::MarkerSegmentationThreshold[CALIB_MARKER_COUNT] [protected]

Referenced by Copy(), GetMarkerSegmentationThreshold(), PrintSelf(), ReadXMLAttributes(), SetCalibrationInputs(), UpdateCalibration(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

vtkPolyData* vtkMRMLTransRectalProstateRobotNode::ModelAxes [protected]

Referenced by Copy(), ResetCalibrationData(), UpdateRobotModel(), UpdateRobotModelAxes(), vtkMRMLTransRectalProstateRobotNode(), and ~vtkMRMLTransRectalProstateRobotNode().

bool vtkMRMLTransRectalProstateRobotNode::ModelAxesVisible [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), SetModelAxesVisible(), UpdateRobotModel(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

vtkPolyData* vtkMRMLTransRectalProstateRobotNode::ModelMarkers[CALIB_MARKER_COUNT] [protected]

Referenced by Copy(), TransformRobotModelMarkers(), UpdateRobotModel(), UpdateRobotModelMarker(), vtkMRMLTransRectalProstateRobotNode(), and ~vtkMRMLTransRectalProstateRobotNode().

vtkPolyData* vtkMRMLTransRectalProstateRobotNode::ModelNeedle [protected]

Referenced by Copy(), UpdateRobotModel(), UpdateRobotModelNeedle(), vtkMRMLTransRectalProstateRobotNode(), and ~vtkMRMLTransRectalProstateRobotNode().

vtkPolyData* vtkMRMLTransRectalProstateRobotNode::ModelProbe [protected]

Referenced by Copy(), UpdateRobotModel(), UpdateRobotModelProbe(), vtkMRMLTransRectalProstateRobotNode(), and ~vtkMRMLTransRectalProstateRobotNode().

double vtkMRMLTransRectalProstateRobotNode::RobotInitialAngle [protected]

Referenced by Copy(), PrintSelf(), ReadXMLAttributes(), SetCalibrationInputs(), UpdateCalibration(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

char* vtkMRMLTransRectalProstateRobotNode::RobotModelNodeRef [protected]

Referenced by Copy(), GetRobotModelNode(), PrintSelf(), UpdateReferenceID(), UpdateReferences(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

char* vtkMRMLTransRectalProstateRobotNode::WorkspaceModelNodeRef [protected]

Referenced by Copy(), GetWorkspaceModelNode(), PrintSelf(), UpdateReferenceID(), UpdateReferences(), vtkMRMLTransRectalProstateRobotNode(), and WriteXML().

The documentation for this class was generated from the following files:
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