Referenced by vtkSlicerColorLogic::AddDefaultColorNodes(), vtkMRMLAnnotationRulerNode::ApplyTransform(), vtkMRMLAnnotationAngleNode::ApplyTransform(), vtkMRMLMeasurementsRulerNode::ApplyTransform(), vtkMRMLMeasurementsAngleNode::ApplyTransform(), vtkMRMLROINode::ApplyTransform(), vtkMRMLFiducialListNode::ApplyTransform(), vtkTransRectalFiducialCalibrationAlgo::CalculateCircleCenterMean(), CompareTwoVolumes(), ComputeAdjacency(), EMLocalRegistrationCostFunction::ComputeCostFunction(), vtkSlicerVolumeTextureMapper3D::ComputePolygons(), vtkSlicerViewControlGUI::ConfigureNavigationWidgetRender(), EMLocalRegistrationCostFunction::CostFunction_Sum_WeightxProbability(), vtkFourDImageLogic::CreateFileListFromDir(), vtkPETCTFusionLogic::DecayCorrection(), RectSource::DefineLine(), RectSource::DefineX(), vtkSlicerViewControlGUI::DeviceCoordinatesToXYZ(), vtkSlicerViewerInteractorStyle::Dolly(), EMAtlasSegment_CalcWeightedCovariance(), EMLocalInterface_Interpolation(), EMLocalShapeCostFunction_CalculateCostFunction(), vtkFourDImageLogic::GenerateBundleFrames(), vtkPharmacokineticsIntensityCurves::GenerateIntensityCurve(), vtkMimxBoundingBoxSurfaceMesh::GenerateNodes(), vtkPharmacokineticsLogic::GenerateParameterMap(), vtkPharmacokineticsLogic::GenerateParameterMapInMask(), vtkMimxApplyImageBasedMaterialProperties::GetAverageSubRegionIntensityValue(), vtkMimxApplyImageBasedMaterialProperties::GetMaximumSubRegionIntensityValue(), vtkPharmacokineticsIntensityCurves::GetMeanIntensity(), vtkPharmacokineticsIntensityCurves::GetMeanMaxMinIntensity(), vtkMimxApplyImageBasedMaterialProperties::GetMedianSubRegionIntensityValue(), vtkPharmacokineticsIntensityCurves::GetSDIntensity(), ipGetDataSize(), itkEMLocalOptimization_Registration_Start(), vtkFourDImageLogic::LoadImagesByList(), main(), MatrixMultiply(), vtkImageMeanIntensityNormalization::MeanMRI(), mexFunction(), NormaliseColumnsSwitched(), OptimizeGreedySwarm(), OptimizeGreedySwarm2(), OptimizeGreedySwarm3(), OptimizeGreedySwarmX(), vtkSlicerViewerInteractorStyle::Pan(), ReadBrainWeb(), vtkEMSegmentRunSegmentationStep::ResetROICenter(), vtkChangeTrackerROIStep::ResetROICenter(), vtkSlicerViewControlGUI::RockView(), vtkEMSegmentRunSegmentationStep::ROIMapShow(), vtkChangeTrackerROIStep::ROIMapShow(), vtkSlicerViewerInteractorStyle::Rotate(), vtkFourDImageLogic::SaveImagesToDir(), vtkTclHelper::SendImageDataTensors(), vtkTclHelper::SendImageDataTensors_UndoSlicerTransform(), vtkBSplineInterpolateImageFunction::SetDerivativeWeights(), vtkBSplineInterpolateImageFunction::SetInterpolationWeights(), vtkMRMLSliceNode::SetLayoutGrid(), vtkMRMLSliceNode::SetLayoutGridColumns(), vtkMRMLSliceNode::SetLayoutGridRows(), vtkImageEMMarkov::setMatrixTest(), vtkMRMLFiducial::SetOrientationWXYZFromMatrix4x4(), vtkEMSegmentRunSegmentationStep::SetRedGreenYellowAllVolumes(), vtkImageEMMarkov::setVectorTest(), vtkChangeTrackerSecondScanStep::ShowUserInterface(), SmallCovarianceMatrixSwitched(), vtkFourDImageLogic::SortFilesFromDirToCreateFileList(), SparseFieldLS::SparseFieldLS(), vtkSlicerViewerInteractorStyle::Spin(), SubtractMeanColumn(), SubtractMeanColumn_DistanceMapSwitched(), time_lapse::time_lapse(), EMLocalShapeCostFunction::Transfere_DistanceMap_Into_SpatialPrior(), vtkSeedTracts::TransformStreamlinesToRASAndAppendToPolyData(), vtkPETCTFusionLogic::UndoDecayCorrection(), vtkPichonFastMarchingPDF::update(), vtkSlicerAnnotationRulerManager::Update3DWidgetVisibility(), vtkSlicerVolumeTextureMapper3D::UpdateColorLookup(), vtkFourDImageGUI::UpdateFrameList(), vtkDiffusionTensorMathematicsExecute1Eigen(), vtkDiffusionTensorMathematicsSimpleExecute1Eigen(), vtkImageEMAtlasSegmenter_MeanFieldApproximation3DPrivate(), vtkImagePCATrainingExecute(), vtkIndirectLookupTableMapDataExact(), vtkSlicerGPUMultiVolumeMapperComputeGradients(), vtkSlicerGPUMultiVolumeMapperComputeScalars(), vtkSlicerGPUVolumeMapperComputeGradients(), vtkSlicerGPUVolumeMapperComputeScalars(), vtkSlicerGPUVolumeTextureMapper3DComputeGradients(), vtkSlicerGPUVolumeTextureMapper3DComputeScalars(), vtkSlicerVolumeTextureMapper3DComputeGradients(), vtkSlicerVolumeTextureMapper3DComputeScalars(), vtkTeemEstimateDiffusionTensorExecute(), vtkIndirectLookupTable::WindowLevel(), itk::WriteEncodedDoubleVector(), and time_lapse::~time_lapse().