VT-NAMIC Workflow Slicer-related issues

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Home < VT-NAMIC Workflow Slicer-related issues
  • Transforms loaded as .mat cannot be saved as .mat. Is there a loss of precision in transform shuffling?
  • EM segmenter does not save some fields in the MRML
  • extensions are not in Slicer path
  • BRAINSFit version as of Oct 8 is broken -- need to revert to 301 that was used by AF earlier
  • Slicer slider has inconsistent response to the clicks to the side of slider -- ignores clicks, then jumps -- very hard to do small adjustments
  • See the directions matrix feature available in Slicer2 missing
  • sometime when the transform is modified, it shows up as "Modified" in Slicer save dialog, but the checkbox is not set
  • EM segmenter bugs submitted: 651, 652, 653, 654

Slicer-related, but not Slicer issues:

  • N4ITK with the threaded bspline filter cannot handle tilted FOV volumes
  • confirm N4ITK doesn't work with OrientedImage class
  • BRAINSFit extension is totally broken as of Oct 9 svn
  • investigate the cause of BRAINSFit failing in BSPline registration when mask is used and FOV tilted