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Title

Authors

2013

Collection

Reference

Towards Improved Ultrasound-based Analysis and 3D Visualization of the Fetal Brain using 3D Slicer

Oyama R., Jakab M., Terata M., Isurugi C., Kaido Y., Knasugi T., Kikuchi A., Sugiyama T., Kikinis R., Pujol S.

Apr-2013

SPL, SLICER

Ultrasound Obstet Gynecol. 2013 Apr 10.

Multi-modality MRI-based Atlas of the Brain

Halle M., Talos I-F., Jakab M., Makris N., Meier D., Wald L., Fischl B., Kikinis R.

Apr-2013

SPL, Download Data, NAC, SLICER

SPL 2013 April;

GBM Volumetry using the 3D Slicer Medical Image Computing Platform

Egger J., Kapur T., Fedorov A., Pieper S., Miller J.V., Veeraraghavan H., Freisleben B., Golby A.J., Nimsky C., Kikinis R.

Mar-2013

NCIGT, NA-MIC, SLICER, SPL

Sci Rep. 2013 Mar 4;3:1364.

Lateral Ventricle Morphology Analysis via Mean Latitude Axis

Paniagua B., Lyall A., Berger J-B., Vachet C., Hamer R.M., Woolson S., Lin W., Gilmore J., Styner M.

Mar-2013

NA-MIC, SLICER

Proc Soc Photo Opt Instrum Eng. 2013 Mar 29;8672.

Comparative Study of NOTES Alone versus NOTES Guided by a New Image Registration System for Navigation in the Mediastinum: A Study in a Porcine Model

Córdova H., San José Estépar R., Rodríguez-D'Jesús A., Martínez-Pallí G., Arguis P., Rodríguez de Miguel C., Navarro-Ripoll R., Perdomo J.M., Cuatrecasas M., Llach J., Vosburgh K.G., Fernández-Esparrach G.

Jan-2013

NCIGT, CIGL, LMI, SLICER

Gastrointest Endosc. 2013 Jan;77(1):102-7.

Fiber Tractography Based on Diffusion Tensor Imaging Compared with High-Angular-Resolution Diffusion Imaging with Compressed Sensing: Initial Experience

Kuhnt D., Bauer M., Egger J., Richter M., Kapur T., Sommer J., Merhof D., Nimsky C.

Jan-2013

SPL, NCIGT, SLICER

Neurosurgery. 2013 Jan;72 Suppl 1:A165-75.

Title

Authors

2012

Collection

Reference

A Prospective Study of Physician-Observed Concussion During a Varsity University Hockey Season: White Matter Integrity in Ice Hockey Players

Koerte I.K., Kaufmann D., Hartl E., Bouix S., Pasternak O., Kubicki M., Rauscher A., Li D.K.B., Dadachanji S.B., Taunton J.A., Forwell L.A., Johnson A.M., Echlin P.S., Shenton M.E.

Dec-2012

PNL, SLICER

Neurosurg Focus. 2012 Dec;33(6):E3.

Labeled Needle Rendering Solution for Image Guided Brachytherapy

Pernelle G.

Dec-2012

NCIGT, SLICER, SPL

Master's Thesis, Technische Universität, München, Germany, 2012.

Pituitary Adenoma Volumetry with 3D Slicer

Egger J., Kapur T., Nimsky C., Kikinis R.

Dec-2012

SPL, NCIGT, SLICER

PLoS One. 2012;7(12):e51788.

SPL Abdominal Atlas

Talos I-F., Jakab M., Kikinis R.

Nov-2012

SPL, Download Data, NAC, SLICER

SPL 2012 November;

3D Slicer as an Image Computing Platform for the Quantitative Imaging Network

Fedorov A., Beichel R., Kalpathy-Cramer J., Finet J., Fillion-Robin J-C., Pujol S., Bauer C., Jennings D., Fennessy F., Sonka M., Buatti J., Aylward S.R., Miller J.V., Pieper S., Kikinis R.

Nov-2012

SPL, NA-MIC, NAC, Prostate Group, SLICER

Magn Reson Imaging. 2012 Nov;30(9):1323-41.

Differences in Simple Morphological Variables in Ruptured and Unruptured Middle Cerebral Artery Aneurysms

Lin N., Ho A., Gross B.A., Pieper S., Frerichs K.U., Day A.L., Du R.

Nov-2012

SPL, NA-MIC, SLICER

J Neurosurg. 2012 Nov;117(5):913-9.

A Bayesian Nonrigid Registration Method to Enhance Intraoperative Target Definition in Image-Guided Prostate Procedures through Uncertainty Characterization

Pursley J., Risholm P., Fedorov A., Tuncali K., Fennessy F.M., Wells III W.M., Tempany C.M., Cormack R.A.

Nov-2012

NCIGT, Prostate Group, SLICER, SPL

Med Phys. 2012 Nov;39(11):6858-67.

SPL Knee Atlas

Richolt J.A., Jakab M., Kikinis R.

Nov-2012

SPL, Download Data, NAC, SLICER

SPL 2012 November;

Informatics Methods to Enable Sharing of Quantitative Imaging Research Data

Levy M., Freymann J.B., Kirby J.S., Fedorov A., Fennessy F.M., Enschrich S.A., Berglund A.E., Fenstermacher D.A., Tan Y., Guo X., Casavant T.L., Brown B.J., Braun T.A., Dekker A., Roelofs E., Mountz J.M., Boada F., Laymon C., Oborski M., Rubin D.L.

Nov-2012

Prostate Group, SLICER, SPL

Magn Reson Imaging. 2012 Nov;30(9):1249-56.

Head and Neck Atlas

Jakab M., Kikinis R.

Nov-2012

SPL, Download Data, NAC, SLICER

SPL 2012 November;

Image Registration for Targeted MRI-guided Transperineal Prostate Biopsy

Fedorov A., Tuncali K., Fennessy F.M., Tokuda J., Hata N., Wells III W.M., Kikinis R., Tempany C.M.

Oct-2012

Prostate Group, NA-MIC, NAC, NCIGT, SLICER, SNR, SPL

J Magn Reson Imaging. 2012 Oct;36(4):987-92.

Derivation of Fiber Tracts Representing the Corticospinal Tract using Anatomical Landmarks

Matsui J.T., Kim E.Y., Magnotta V., Johnson H.

Oct-2012

NA-MIC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). DTI Tractography Challenge Workshop.

Neuroimaging of Structural Pathology and Connectomics in Traumatic Brain Injury: Toward Personalized Outcome Prediction

Irimia A., Wang B., Aylward S.R., Prastawa M.W., Pace D.F., Gerig G., Hovda D.A., Kikinis R., Vespa P.M., Van Horn J.D.

Oct-2012

NA-MIC, SLICER, SPL

NeuroImage: Clinical. 2012; 1(1):1-17.

SlicerRT – Radiation Therapy Research Toolkit for 3D Slicer

Pinter C., Lasso A., Wang A., Jaffray D., Fichtinger G.

Oct-2012

SLICER, NA-MIC

Medical Physics. 2012 Oct;39(10):6332-7.

Integration of the OpenIGTLink Network Protocol for Image-guided Therapy with the Medical Platform MeVisLab

Egger J., Tokuda J., Chauvin L., Freisleben B., Nimsky C., Kapur T., Wells III W.M.

Sep-2012

NCIGT, NA-MIC, SLICER, SNR, SPL

Int J Med Robot. 2012 Sep;8(3):282-90.

Anterior Limb of the Internal Capsule in Schizophrenia: a Diffusion Tensor Tractography Study

Rosenberger G., Nestor P.G., Oh J.S., Levitt J.J., Kindleman G., Bouix S., Fitzsimmons J., Niznikiewicz M., Westin C-F., Kikinis R., McCarley R.W., Shenton M.E., Kubicki M.

Sep-2012

PNL, LMI, NA-MIC, NAC, NCIGT, SLICER, SPL

Brain Imaging Behav. 2012 Sep;6(3):417-25.

A 3D Interactive Multi-object Segmentation Tool using Local Robust Statistics Driven Active Contours

Gao Y., Kikinis R., Bouix S., Shenton M., Tannenbaum A.

Aug-2012

NA-MIC, NAC, PNL, SLICER, SPL

Med Image Anal. 2012 Aug;16(6):1216-27.

Two Solutions for Registration of Ultrasound to MRI for Image-guided Prostate Interventions

Moradi M., Janoos F., Fedorov A., Risholm P., Kapur T., Wolfsberger L.D., Nguyen P.L., Tempany C.M., Wells III W.M.

Aug-2012

NCIGT, Prostate Group, SLICER, SPL

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:1129-32.

Practical Considerations in T1 Mapping of Prostate for Dynamic Contrast Enhancement Pharmacokinetic Analyses

Fennessy F.M., Fedorov A., Gupta S.N., Schmidt E.J., Tempany C.M., Mulkern R.V.

Aug-2012

Prostate Group, NCIGT, SLICER, SPL

Magn Reson Imaging. 2012 Nov;30(9):1224-33.

A Review of Magnetic Resonance Imaging and Diffusion Tensor Imaging Findings in Mild Traumatic Brain Injury

Shenton M.E., Hamoda H.M., Schneiderman J.S., Bouix S., Pasternak O., Rathi Y., Vu M-A., Purohit M.P., Helmer K., Koerte I., Lin A.P., Westin C-F., Kikinis R., Kubicki M., Stern R.A., Zafonte R.

Jun-2012

PNL, LMI, NA-MIC, NAC, SLICER, SPL

Brain Imaging Behav. 2012 Jun;6(2):137-92.

Chronic Traumatic Encephalopathy: Neurodegeneration Following Repetitive Concussive and Subconcussive Brain Trauma

Baugh C.M., Stamm J.M., Riley D.O., Gavett B.E., Shenton M.E., Lin A., Nowinski C.J., Cantu R.C., McKee A.C., Stern R.A.

Jun-2012

PNL, SLICER

Brain Imaging Behav. 2012 Jun;6(2):244-54.

Visual Pathway Study using in vivo DTI Tractography to Complement Classical Anatomy

Wu W., Rigolo L., Norton I., Shriver S., Golby A.J.

Mar-2012

NCIGT, SLICER

Neurosurgery. 2012 Mar;70(1 Suppl Operative):145-56; discussion 156.

fMRI-DTI Modeling via Landmark Distance Atlases for Prediction and Detection of Fiber Tracts

O'Donnell L., Rigolo L., Norton I., Wells III W.M., Westin C-F., Golby A.J.

Mar-2012

NCIGT, LMI, NAC, SLICER, SPL

Neuroimage. 2012 Mar;60(1):456-70.

MR-guided Prostate Biopsy pre- and intra-procedural MRI Registration Evaluation Dataset

Fedorov A., Tuncali K., Fennessy F.M., Tempany C.M.

Mar-2012

Prostate Group, Download Data, NA-MIC, NAC, NCIGT, SLICER, SPL

NCIGT 2012 March;

Towards Fast and Accurate Temperature Mapping with Proton Resonance Frequency-based MR Thermometry

Yuan J., Mei C-S., Panych L.P., McDannold N., Madore B.

Mar-2012

MIPG, NCIGT, SLICER

Quant Imaging Med Surg. 2012 March;2(1):21-32.

Patient-tailored Connectomics Visualization for the Assessment of White Matter Atrophy in Traumatic Brain Injury

Irimia A., Chambers M.C., Torgerson C.M., Filippou M., Hovda D.A., Alger J.R., Gerig G., Toga A.W., Vespa P.M., Kikinis R., Van Horn J.D.

Feb-2012

NA-MIC, NAC, SLICER, SPL

Front. Neur. 3(10):1-21.

Square-cut: A Segmentation Algorithm on the Basis of a Rectangle Shape

Egger J., Kapur T., Dukatz T., Kolodziej M., Zukić D., Freisleben B., Nimsky C.

Feb-2012

NCIGT, SLICER, SPL

PLoS One. 2012;7(2):e31064.

Voineskos A.N., Rajji T.K., Lobaugh N.J., Miranda D., Shenton M.E., Kennedy J.L., Pollock B.G., Mulsant B.H.

Jan-2012

NA-MIC, PNL, SLICER

Neurobiol Aging. 2012 Jan;33(1):21-34.

Title

Authors

2011

Collection

Reference

Atlas-Guided Segmentation of Vervet Monkey Brain MRI

Fedorov A., Li X., Pohl K.M., Bouix S., Styner M., Addicott M., Wyatt C., Daunais J.B., Wells III W.M., Kikinis R.

Dec-2011

NAC, NA-MIC, SLICER, SPL

Open Neuroimag J. 2011; 5:186–197.

Comparison of Acute and Chronic Traumatic Brain Injury using Semi-automatic Multimodal Segmentation of MR Volumes

Irimia A., Chambers M.C., Alger J.R., Filippou M., Prastawa M., Wang B., Hovda D., Gerig G., Toga A.W., Kikinis R., Vespa P.M., Van Horn J.D.

Nov-2011

NA-MIC, NAC, SLICER, SPL

J Neurotrauma. 2011 Nov;28(11):2287-306.

Fiber Geometry in the Corpus Callosum in Schizophrenia: Evidence for Transcallosal Misconnection

Whitford T.J., Savadjiev P., Kubicki M., O'Donnell L.J., Terry D.P., Bouix S., Westin C-F., Schneiderman J.S., Bobrow L., Rausch A.C., Niznikiewicz M., Nestor P.G., Pantelis C., Wood S.J., McCarley R.W., Shenton M.E.

Oct-2011

PNL, LMI, NA-MIC, NAC, SLICER, SPL

Schizophr Res. 2011 Oct;132(1):69-74.

Manual Refinement System for Graph-Based Segmentation Results in the Medical Domain

Egger J., Colen R.R., Freisleben B., Nimsky C.

Oct-2011

SPL, SLICER

J Med Syst. 2012 Oct;36(5):2829-39.

Multiple Costal Cartilage Graft Reconstruction for the Treatment of a Full-length Laryngotracheal Stenosis after an Inhalation Burn

Furák J., Szakács L., Nagy A., Rovó L.

Oct-2011

SLICER

Interact Cardiovasc Thorac Surg. 2011 Oct;13(4):453-5.

Sheet-Like White Matter Fiber Tracts: Representation, Clustering, and Quantitative Analysis

Maddah M., Miller J.V., Sullivan E.V., Pfefferbaum A., Rohlfing T.

Sep-2011

NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):191-9.

Improving Registration using Multi-channel Diffeomorphic Demons Combined with Certainty Maps

Forsberg D., Rathi Y., Bouix S., Wassermann D., Knutsson H., Westin C-F.

Sep-2011

LMI, NAC, PNL, SLICER

Proceedings of the First international conference on Multimodal brain image analysis 2011;19-26.

Voxel-based Morphometry (VBM) Studies in Schizophrenia-Can White Matter Changes Be Reliably Detected with VBM?

Melonakos E.D., Shenton M.E., Rathi Y., Terry D.P., Bouix S., Kubicki M.

Aug-2011

PNL, NA-MIC, SLICER

Psychiatry Res. 2011 Aug 30;193(2):65-70.

3D Slicer as a Tool for Interactive Brain Tumor Segmentation

Kikinis R., Pieper S.

Aug-2011

SPL, NA-MIC, NAC, NCIGT, SLICER

Conf Proc IEEE Eng Med Biol Soc. 2011 Aug;2011:6982-4.

White Matter Bundle Registration and Population Analysis Based on Gaussian Processes

Wassermann D., Rathi Y., Bouix S., Kubicki M., Kikinis R., Shenton M.E., Westin C-F.

Jul-2011

NAC, LMI, NA-MIC, NCIGT, PNL, SLICER, SPL

Inf Process Med Imaging. 2011;22:320-32.

Combining Two-dimensional Spatially Selective RF Excitation, Parallel Imaging, and UNFOLD for Accelerated MR Thermometry Imaging

Mei C-S., Panych L.P., Yuan J., McDannold N., Treat L.H., Jing Y., Madore B.

Jul-2011

NCIGT, FUS, MIPG, SLICER

Magn Reson Med. 2011 Jul;66(1):112-22.

Radiogenomic Mapping of Edema/Cellular Invasion MRI-Phenotypes in Glioblastoma Multiforme

Zinn P.O., Majadan B., Sathyan P., Singh S.K., Majumder S., Jolesz F.A., Colen R.R.

Jun-2011

NCIGT, SLICER

PLoS One. 2011;6(10):e25451.

Optimal Transseptal Puncture Location for Robot Assisted Left Atrial Catheter Ablation

Jayender J., Patel R.V., Michaud G.F., Hata N.

Jun-2011

SNR, SLICER, SPL

Int J Med Robot. 2011 Jun;7(2):193-201.

Statistical Analysis of Fiber Bundles using Multi-tensor Tractography: Application to First-episode Schizophrenia

Rathi Y., Kubicki M., Bouix S., Westin C-F., Goldstein J., Seidman L., Mesholam-Gately R., McCarley R.W., Shenton M.E.

May-2011

PNL, LMI, NAC, SLICER, SPL

Magn Reson Imaging. 2011 May;29(4):507-15.

Consistent Neuroanatomical Age-related Volume Differences Across Multiple Samples

Walhovd K.B., Westlye L.T., Amlien I., Espeseth T., Reinvang I., Raz N., Agartz I., Salat D.H., Greve D.N., Fischl B., Dale A.M., Fjell A.M.

May-2011

SLICER

Neurobiol Aging. 2011 May;32(5):916-32.

Active Learning Guided Interactions for Consistent Image Segmentation with Reduced User Interactions

Veeraraghavan H., Miller J.V.

Apr-2011

NAC, NA-MIC, SLICER

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2011; 1645–1648.

Deformable Image Registration of Sliding Organs Using Anisotropic Diffusive Regularization

Pace D., Enquobahrie A., Yang H., Aylward S.R., Niethammer M.

Apr-2011

NA-MIC, SLICER

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2011;407-413.

Brain Regional Lesion Burden and Impaired Mobility in the Elderly

Moscufo N., Guttmann C.R.G., Meier D., Csapo I., Hildenbrand P.G., Healy B., Schmidt J., Wolfson L.

Apr-2011

NAC, CNI, SLICER

Neurobiol Aging. 2011 Apr;32(4):646-54.

Stochastic Tractography Study of Inferior Frontal Gyrus Anatomical Connectivity in Schizophrenia

Kubicki M., Alvarado J.L., Westin C-F., Tate D.F., Markant D., Terry D.P., Whitford T.J., De Siebenthal J., Bouix S., McCarley R.W., Kikinis R., Shenton M.E.

Apr-2011

PNL, LMI, NA-MIC, NAC, SLICER, SPL

Neuroimage. 2011 Apr 15;55(4):1657-64.

DTI Registration in Atlas Based Fiber Analysis of Infantile Krabbe Disease

Wang Y., Gupta A., Liu Z., Zhang H., Escolar M.L., Gilmore J.H., Gouttard S., Fillard P., Maltbie E., Gerig G., Styner M.

Apr-2011

NA-MIC, SLICER

Neuroimage. 2011 Apr 15;55(4):1577-86.

A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients

Pohl K.M., Konukoglu E., Novellas S., Ayache N., Fedorov A., Talos I-F., Golby A., Wells III W.M., Kikinis R., Black P.M.

Mar-2011

SPL, NA-MIC, NAC, NCIGT, SLICER

Neurosurgery. 2011 Mar;68(1 Suppl Operative):225-33.

Lung Volumes and Emphysema in Smokers with Interstitial Lung Abnormalities

Washko G.R., Hunninghake G.M., Fernández I.E., Nishino M., Okajima Y., Yamashiro T., Ross J.C., San José Estépar R., Lynch D.A., Brehm J.M., Andriole K.P., Diaz A.A., Khorasani R., D'Aco K., Sciurba F.C., Silverman E.K., Hatabu H., Rosas I.O.

Mar-2011

LMI, SLICER, SPL

N Engl J Med. 2011 Mar 10;364(10):897-906.

Interactive Diffusion Tensor Tractography Visualization for Neurosurgical Planning

Golby A.J., Kindlmann G., Norton I., Yarmarkovich A., Pieper S., Kikinis R.

Feb-2011

NCIGT, NA-MIC, NAC, SLICER, SPL

Neurosurgery. 2011 Feb; 68(2):496-505.

Development of Stereotactic Mass Spectrometry for Brain Tumor Surgery

Agar N.Y.R., Golby A.J., Ligon K.L., Norton I., Mohan V., Wiseman J.M., Tannenbaum A., Jolesz F.A.

Feb-2011

SMIL, NA-MIC, NAC, SLICER

Neurosurgery. 2011 Feb;68(2):280-89; discussion 290.

Intra-operative Real-time Querying of White Matter Tracts during Frameless Stereotactic Neuronavigation

Elhawary H., Liu H., Patel P., Norton I., Rigolo L., Papademetris X., Hata N., Golby A.J.

Feb-2011

NCIGT, SLICER, SNR

Neurosurgery. 2011 Feb;68(2):506-16; discussion 516.

Anisotropy of Transcallosal Motor Fibres Indicates Functional Impairment in Children with Periventricular Leukomalacia

Koerte I.K., Pelavin P., Kirmess B., Fuchs T., Berweck S., Laubender R.P., Borggraefe I., Schroeder S., Danek A., Rummeny C., Reiser M., Kubicki M., Shenton M.E., Ertl-Wagner B., Heinen F.

Feb-2011

PNL, NA-MIC, SLICER

Dev Med Child Neurol. 2011 Feb;53(2):179-186.

Efficient, Graph-based White Matter Connectivity from Orientation Distribution Functions via Multi-directional Graph Propagation

Boucharin A., Oguz I., Vachet C., Shi Y., Sanchez M., Styner M.

Feb-2011

NA-MIC, SLICER

Proceedings of SPIE 2011; 7962(79620S):1-8.

Predicting Inter-hemispheric Transfer Time from the Diffusion Properties of the Corpus Callosum in Healthy Individuals and Schizophrenia Patients: A Combined ERP and DTI Study

Whitford T.J., Kubicki M., Ghorashi S., Schneiderman J.S., Hawley K.J., McCarley R.W., Shenton M.E., Spencer K.M.

Feb-2011

PNL, SLICER

Neuroimage. 2011 Feb 1;54(3):2318-29.

Image Registration of Pre-procedural MRI and Intra-procedural CT Images to Aid CT-guided Percutaneous Cryoablation of Renal Tumors

Oguro S., Tuncali K., Elhawary H., Morrison P.R., Hata N., Silverman S.G.

Jan-2011

NCIGT, NA-MIC, SLICER, SNR

Int J Comput Assist Radiol Surg. 2011 Jan;6(1):111-7.

Title

Authors

2010

Collection

Reference

Structural Neuroimaging in Schizophrenia: From Methods to Insights to Treatments

Shenton M.E., Whitford T.J., Kubicki M.

Dec-2010

NA-MIC, PNL, SLICER

Dialogues Clin Neurosci. 2010;12(3):317-32.

The Role of a Computed Tomography-based Image Registered Navigation System for Natural Orifice Transluminal Endoscopic Surgery: a Comparative Study in a Porcine Model

Fernández-Esparrach G., San José Estépar R., Guarner-Argente C., Martínez-Pallí G., Navarro R., Rodríguez de Miguel C., Córdova H., Thompson C.C., Lacy A.M., Donoso L., Ayuso-Colella J.R., Ginès A., Pellisé M., Llach J., Vosburgh K.G.

Dec-2010

NCIGT, CIGL, SLICER

Endoscopy. 2010 Dec;42(12):1096-103.

Multimodality Non-rigid Image Registration for Planning, Targeting and Monitoring during CT-guided Percutaneous Liver Tumor Cryoablation

Elhawary H., Oguro S., Tuncali K., Morrison P.R., Tatli S., Shyn P.B., Silverman S.G., Hata N.

Nov-2010

NCIGT, NA-MIC, SLICER, SNR

Acad Radiol. 2010 Nov;17(11):1334-44.

Multimodality Intraoperative MRI for Brain Tumor Surgery

Colen R.R., Kekhia H., Jolesz F.A.

Oct-2010

NCIGT, SLICER

Expert Rev Neurother. 2010 Oct;10(10):1545-58.

Preliminary Evaluation of a MRI-compatible Modular Robotic System for MRI-guided Prostate Interventions

Song S-E., Cho N., Tokuda J., Hata N., Tempany C.M., Fichtinger G., Iordachita I.

Sep-2010

NCIGT, Prostate Group, SLICER, SNR

Proc IEEE RAS EMBS Int Conf Biomed Robot Biomechatron. 2010 Sep 26;2010:796-801.

Multivariate Varying Coefficient Models for DTI Tract Statistics

Zhu H., Styner M., Li Y., Kong L., Shi Y., Lin W., Coe C., Gilmore J.H.

Sep-2010

NA-MIC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2010;13(Pt 1):690-7.

The Fiber Laterality Histogram: A New Way to Measure White Matter Asymmetry

O'Donnell L., Westin C-F., Norton I., Whalen S., Rigolo L., Propper R., Golby A.J.

Sep-2010

NAC, LMI, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2010;13(Pt 2):225-32.

The Effects of Young’s Modulus on Predicting Prostate Deformation for MRI-guided Interventions

McAnearney S., Fedorov A., Joldes G., Hata N., Tempany C.M., Miller K., Wittek A.

Sep-2010

Prostate Group, NCIGT, SLICER, SNR, SPL

Int Conf Med Image Comput Comput Assist Interv. 2010;13(WS); Workshop on Computational Biomechanics for Medicine

Factors in Sensory Processing of Prosody in Schizotypal Personality Disorder: An fMRI Experiment

Dickey C.C., Mórocz I.A., Minney D., Niznikiewicz M.A., Voglmaier M.M., Panych L.P., Khan U., Zacks R., Terry D.P., Shenton M.E., McCarley R.W.

Aug-2010

PNL, CAFE, MIPG, SLICER

Schizophr Res. 2010 Aug;121(1-3):75-89.

Tensor Kernels for Simultaneous Fiber Model Estimation and Tractography

Rathi Y., Malcolm J.G., Michailovich O.V., Westin C-F., Shenton M.E., Bouix S.

Jul-2010

PNL, LMI, NA-MIC, NAC, SLICER

Magn Reson Med. 2010 Jul;64(1):138-48.

Corpus Callosum Abnormalities and their Association with Psychotic Symptoms in Patients with Schizophrenia

Whitford T.J., Kubicki M., Schneiderman J.S., O'Donnell L.J., King R., Alvarado J.L., Khan U., Markant D., Nestor P.G., Niznikiewicz M., McCarley R.W., Westin C-F., Shenton M.E.

Jul-2010

PNL, LMI, NA-MIC, SLICER

Biol Psychiatry. 2010 Jul 1;68(1):70-7.

A Combined FMRI and DTI Examination of Functional Language Lateralization and Arcuate Fasciculus Structure: Effects of Degree Versus Direction of Hand Preference

Propper R.E., O'Donnell L.J., Whalen S., Tie Y., Norton I.H., Suarez R.O., Zöllei L., Radmanesh A., Golby A.J.

Jul-2010

NCIGT, SLICER

Brain Cogn. 2010 Jul;73(2):85-92.

Open Core Control Software for Surgical Robots

Arata J., Kozuka H., Kim H.W., Takesue N., Vladimirov B., Sakaguchi M., Tokuda J., Hata N., Chinzei K., Fujimoto H.

May-2010

NCIGT, NA-MIC, SLICER, SNR

Int J Comput Assist Radiol Surg. 2010 May;5(3):211-20.

JHU-MNI-ss Atlas

Oishi K., Faria A.V., Mori S.

May-2010

Download Data, SLICER

JHU 2010 May;

Finite Element Modeling of Subcutaneous Implantable Defibrillator Electrodes in an Adult Torso

Jolley M., Stinstra J., Tate J., Pieper S., Macleod R., Chu L., Wang P., Triedman J.K.

May-2010

NAC, SLICER, SPL

Heart Rhythm. 2010 May;7(5):692-8.

Diffusion Tensor Tractography Findings in Schizophrenia Across the Adult Lifespan

Voineskos A.N., Lobaugh N.J., Bouix S., Rajji T.K., Miranda D., Kennedy J.L., Mulsant B.H., Pollock B.G., Shenton M.E.

May-2010

PNL, SLICER

Brain. 2010 May;133(Pt 5):1494-504.

Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities

Covington K., McCreedy E.S., Chen M., Carass A., Aucoin N., Landman B.A.

May-2010

SLICER, SPL

Annu ORNL Biomed Sci Eng Cent Conf. 2010 May 25;2010:1-4.

Affine Registration of Label Maps in Label Space

Rathi Y., Malcolm J., Bouix S., Tannenbaum A.

Apr-2010

PNL, NA-MIC, NAC, SLICER

J Computing 2010;2(4):1–11.

FRATS: Functional Regression Analysis of DTI Tract Statistics

Zhu H., Styner M., Tang N., Liu Z., Lin W., Gilmore J.H.

Apr-2010

NA-MIC, SLICER

IEEE Trans Med Imaging. 2010 Apr;29(4):1039-49.

Morphological Characteristics of Brain Tumors Causing Seizures

Lee J.W., Wen P.Y., Hurwitz S., Black P., Kesari S., Drappatz J., Golby A.J., Wells III W.M., Warfield S.K., Kikinis R., Bromfield E.B.

Mar-2010

NAC, CRL, NCIGT, SLICER, SPL

Arch Neurol. 2010 Mar;67(3):336-42.

Visualization of Image Data from Cells to Organisms

Walter T., Shattuck D.W., Baldock R., Bastin M.E., Carpenter A.E., Duce S., Ellenberg J., Fraser A., Hamilton N., Pieper S., Ragan M.A., Schneider J.E., Tomancak P., Hériché J-K.

Mar-2010

NA-MIC, NAC, SLICER

Nat Methods. 2010 Mar;7(3 Suppl):S26-41.

Comparison of Manual and Automated Determination of Hippocampal Volumes in MCI and Early AD

Shen L., Saykin A.J., Kim S., Firpi H.A., West J.D., Risacher S.L., McDonald B.C., McHugh T.L., Wishart H.A., Flashman L.A.

Mar-2010

NA-MIC, SLICER

Brain Imaging Behav. 2010 Mar 1;4(1):86-95.

Local White Matter Geometry from Diffusion Tensor Gradients

Savadjiev P., Kindlmann G.L., Bouix S., Shenton M.E., Westin C-F.

Feb-2010

NA-MIC, LMI, NAC, NCIGT, PNL, SLICER

Neuroimage. 2010 Febr 15;49(4):3175-3186.

Coronary Artery Centerline Extraction in 3D Slicer using VMTK based Tools

Hähn D.

Feb-2010

SPL, NA-MIC, SLICER

Master's Thesis, University of Heidelberg, Germany, 2010.

Comparing Prefrontal Gray and White Matter Contributions to Intelligence and Decision Making in Schizophrenia and Healthy Controls

Nestor P.G., Kubicki M., Nakamura M., Niznikiewicz M., McCarley R.W., Shenton M.E.

Jan-2010

PNL, SLICER

Neuropsychology. 2010 Jan;24(1):121-9.

Perk Station-Percutaneous Surgery Training and Performance Measurement Platform

Vikal S., U-Thainual P., Carrino J.A., Iordachita I., Fischer G.S., Fichtinger G.

Jan-2010

SLICER, NA-MIC

Comput Med Imaging Graph. 2010 Jan;34(1):19-32.

Integrated Navigation and Control Software System for MRI-guided Robotic Prostate Interventions

Tokuda J., Fischer G.S., DiMaio S.P., Gobbi D.G., Csoma C., Mewes P.W., Fichtinger G., Tempany C.M., Hata N.

Jan-2010

NCIGT, NA-MIC, NAC, Prostate Group, SLICER, SNR

Comput Med Imaging Graph. 2010 Jan;34(1):3-8.

Title

Authors

2009

Collection

Reference

OpenIGTLink: an Open Network Protocol for Image-guided Therapy Environment

Tokuda J., Fischer G.S., Papademetris X., Yaniv Z., Ibanez L., Cheng P., Liu H., Blevins J., Arata J., Golby A.J., Kapur T., Pieper S., Burdette E.C., Fichtinger G., Tempany C.M., Hata N.

Dec-2009

NCIGT, NA-MIC, NAC, Prostate Group, SLICER, SNR

Int J Med Robot. 2009 Dec;5(4):423-34.

MRI Signal Intensity Based B-Spline Nonrigid Registration for Pre- and Intraoperative Imaging During Prostate Brachytherapy

Oguro S., Tokuda J., Elhawary H., Haker S., Kikinis R., Tempany C.M., Hata N.

Nov-2009

SNR, NA-MIC, NAC, NCIGT, Prostate Group, SLICER, SPL

J Magn Reson Imaging. 2009 Nov;30(5):1052-8.

Increased Sensitivity to Effects of Normal Aging and Alzheimer's Disease on Cortical Thickness by Adjustment for Local Variability in Gray/White Contrast: A Multi-sample MRI Study

Westlye L.T., Walhovd K.B., Dale A.M., Espeseth T., Reinvang I., Raz N., Agartz I., Greve D.N., Fischl B., Fjell A.M.

Oct-2009

NA-MIC, SLICER

Neuroimage. 2009 Oct 1;47(4):1545-57.

New Expectation Maximization Segmentation Pipeline in Slicer 3

Rannou N., Jaume S., Pieper S., Kikinis R.

Sep-2009

NA-MIC, SLICER, SPL

Insight Journal, Sep 15, 2009. pp.1-47.

Intra-operative Multimodal Non-rigid Registration of the Liver for Navigated Tumor Ablation

Elhawary H., Oguro S., Tuncali K., Morrison P.R., Shyn P.B., Tatli S., Silverman S.G., Hata N.

Sep-2009

SNR, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):837-844.

Towards Validation of DTI Tractography: Statistical Analysis of the Differences Observed Among Tractography Algorithms

Pujol S., Magnotta V., De Siebenthal J., Kubicki M., Hayes K., Westin C-F., Lemaire J-J., Kikinis R., Gollub R.L., Wells III W.M.

Sep-2009

NAC, LMI, NA-MIC, PNL, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(WS). Workshop on Diffusion Modelling and the Fibre Cup.

Optimal Transseptal Puncture Location for Robot Assisted Left Atrial Catheter Ablation

Jayender J., Patel R., Michaud G., Hata N.

Sep-2009

SNR, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):1-8.

An Open-source Real-time Ultrasound Reconstruction System for Four-dimensional Imaging of Moving Organs

Pace D., Gobbi D.G., Wedlake C., Gumprecht J., Boisvert J., Tokuda J., Hata N., Peters T.

Sep-2009

SLICER, NA-MIC, NAC, NCIGT, SNR, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(WS).

Local White Matter Geometry Indices from Diffusion Tensor Gradients

Savadjiev P., Kindlmann G.L., Bouix S., Shenton M.E., Westin C-F.

Sep-2009

NA-MIC, LMI, NAC, NCIGT, PNL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):345–352.

Comparison of Blocked and Event-related fMRI Designs for Pre-surgical Language Mapping

Tie Y., Suarez R.O., Whalen S., Radmanesh A., Norton I.H., Golby A.J.

Aug-2009

NCIGT, SLICER

Neuroimage. 2009 Aug;47 Suppl 2:T107-15.

Localization of Brain White Matter Hyperintensities and Urinary Incontinence in Community-dwelling Older Adults

Kuchel G.A., Moscufo N., Guttmann C.R.G., Zeevi N., Wakefield D., Schmidt J., Dubeau C.E., Wolfson L.

Aug-2009

CNI, SLICER

J Gerontol A Biol Sci Med Sci. 2009 Aug;64(8):902-9.

Neural Tractography using an Unscented Kalman Filter

Malcolm J.G., Shenton M.E., Rathi Y.

Jul-2009

PNL, NA-MIC, NAC, SLICER, SPL

Inf Process Med Imaging. 2009;21:126-38.

Parametric Surface Modeling and Registration for Comparison of Manual and Automated Segmentation of the Hippocampus

Shen L., Firpi H.A., Saykin A.J., West J.D.

Jun-2009

NA-MIC, SLICER

Hippocampus. 2009 Jun;19(6):588-95.

Relationship between White Matter Integrity, Attention, and Memory in Schizophrenia: A Diffusion Tensor Imaging Study

Kubicki M., Niznikiewicz M., Connor E., Nestor P., Bouix S., Dreusicke M., Kikinis R., McCarley R.W., Shenton M.E.

Jun-2009

PNL, NA-MIC, NAC, SLICER, SPL

Brain Imaging Behav. 2009 Jun 1;3(2):191-201.

Tumor Ablation Therapy of Liver Cancers with an Open Magnetic Resonance Imaging-based Navigation System

Maeda T., Hong J., Konishi K., Nakatsuji T., Yasunaga T., Yamashita Y., Taketomi A., Kotoh K., Enjoji M., Nakashima H., Tanoue K., Maehara Y., Hashizume M.

May-2009

SLICER, SNR

Surg Endosc. 2009 May;23(5):1048-53.

Shape Abnormalities of Caudate Nucleus in Schizotypal Personality Disorder

Levitt J.J., Styner M., Niethammer M., Bouix S., Koo M., Voglmaier M.M., Dickey C., Niznikiewicz M.A., Kikinis R., McCarley R.W., Shenton M.E.

May-2009

PNL, NA-MIC, NAC, SLICER, SPL

Schizophr Res. 2009 May;110(1-3):127-139.

Uncinate Fasciculus Abnormalities in Recent Onset Schizophrenia and Affective Psychosis: A Diffusion Tensor Imaging Study

Kawashima T., Nakamura M., Bouix S., Kubicki M., Salisbury D., Westin C-F., McCarley R.W., Shenton M.E.

May-2009

PNL, LMI, NA-MIC, SLICER

Schizophr Res. 2009 May;110(1-3):119-126.

Clinical Application of Curvilinear Distraction Osteogenesis for Correction of Mandibular Deformities

Kaban L.B., Seldin E.B., Kikinis R., Yeshwant K., Padwa B.L., Troulis M.J.

May-2009

NAC, SLICER, SPL

J Oral Maxillofac Surg. 2009 May;67(5):996-1008.

Quantitative Examination of a Novel Clustering Method using Magnetic Resonance Diffusion Tensor Tractography

Voineskos A.N., O'Donnell L., Lobaugh N., Markant D., Ameis S., Niethammer M., Mulsant B., Pollock B., Kennedy J., Westin C-F., Shenton M.E.

Apr-2009

PNL, LMI, NAC, NCIGT, SLICER

Neuroimage. 2009 Apr 1;45(2):370-6.

In Vivo Hippocampal Measurement and Memory: A Comparison of Manual Tracing and Automated Segmentation in a Large Community-based Sample

Cherbuin N., Anstey K.J., Réglade-Meslin C., Sachdev P.S.

Apr-2009

SLICER

PLoS One. 2009;4(4):e5265.

Integration of the Vascular Modeling Toolkit in 3D Slicer

Hähn D.

Apr-2009

SLICER, SPL

Student Research Project 2009 Apr;

Origins of Intraoperative MRI

Mislow J.M.K., Golby A.J., Black P.M.

Apr-2009

NCIGT, SLICER

Neurosurg Clin N Am. 2009 Apr;20(2):137-46.

Multimodal Imaging in Mild Cognitive Impairment: Metabolism, Morphometry and Diffusion of the Temporal-parietal Memory Network

Walhovd K.B., Fjell A.M., Amlien I., Grambaite R., Stenset V., Bjørnerud A., Reinvang I., Gjerstad L., Cappelen T., Due-Tønnessen P., Fladby T.

Mar-2009

SLICER

Neuroimage. 2009 Mar 1;45(1):215-23.

Data Synthesis and Tool Development for Exploring Imaging Genomic Patterns

Kim S., Shen L., Saykin A.J., West J.D.

Mar-2009

NA-MIC, SLICER

Proceedings of IEEE Symp Comput Intell Bioinforma Comput Biol 2009 Mar 30;2009:298-305

Demographic and Biological Influences on Cognitive Reserve

Kaplan R.F., Cohen R.A., Moscufo N., Guttmann C.R.G., Chasman J., Buttaro M., Hall C.H., Wolfson L.

Mar-2009

CNI, SLICER

J Clin Exp Neuropsychol. 2009 Mar 31:1-9.

Multimodal SPL Brain Atlas Data

Talos I-F., Wald L., Halle M., Kikinis R.

Feb-2009

NAC, Download Data, SLICER, SPL

SPL 2009 February;

Spiny Versus Stubby: 3D Reconstruction of Human Myenteric (type I) Neurons

Lindig T.M., Kumar V., Kikinis R., Pieper S., Schrödl F., Neuhuber W.L., Brehmer A.

Jan-2009

SLICER, NA-MIC, NAC, SPL

Histochem Cell Biol. 2009 Jan;131(1):1-12.

A Role for Self-gravity at Multiple Length Scales in the Process of Star Formation

Goodman A.A., Rosolowsky E.W., Borkin M.A., Foster J.B., Halle M., Kauffmann J., Pineda J.E.

Jan-2009

NA-MIC, NAC, SLICER, SPL

Nature. 2009 Jan 1;457(7225):63-6.

Diffusion Tractography of the Fornix in Schizophrenia

Fitzsimmons J., Kubicki M., Smith K., Bushell G., San José Estépar R., Westin C-F., Nestor P.G., Niznikiewicz M., Kikinis R., McCarley R.W., Shenton M.E.

Jan-2009

PNL, LMI, NA-MIC, NAC, SLICER, SPL

Schizophr Res 2009 Jan; 107:39–46.

MR-guided Prostate Interventions with 3D Slicer and the NA-MIC Kit

Pace D., Oguro S., Haker S., Hata N.

Jan-2009

NA-MIC, Download Data, NAC, NCIGT, Prostate Group, SLICER, SNR

NCIGT-SNR Tutorial. 2009 January;

Title

Authors

2008

Collection

Reference

An Integrated System for Planning, Navigation and Robotic Assistance for Skull Base Surgery

Xia T., Baird C., Jallo G., Hayes K., Nakajima N., Hata N., Kazanzides P.

Dec-2008

SLICER, NA-MIC, NAC, NCIGT, SNR, SPL

Int J Med Robot. 2008 Dec;4(4):321-30.

Image Guided Therapy in Slicer3: Planning for Image Guided Neurosurgery

Pace D., Hata N.

Nov-2008

NA-MIC, Download Data, NAC, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 November;

Uterine Leiomyomas: MR Imaging–guided Focused Ultrasound Surgery-Imaging Predictors of Success

Lénárd Z.M., McDannold N., Fennessy F.M., Stewart E.A., Jolesz F.A., Hynynen K., Tempany C.M.

Oct-2008

FUS, NCIGT, Prostate Group, SLICER

Radiology. 2008 Oct;249(1):187-94.

An MRI Study of Age-related White and Gray Matter Volume Changes in the Rhesus Monkey

Wisco J.J., Killiany R.J., Guttmann C.R.G., Warfield S.K., Moss M.B., Rosene D.L.

Oct-2008

CNI, CRL, NAC, SLICER

Neurobiol Aging. 2008 Oct;29(10):1563-75.

A Rhesus Monkey Reference Label Atlas for Template Driven Segmentation

Wisco J.J., Rosene D.L., Killiany R.J., Moss M.B., Warfield S.K., Egorova S., Wu Y., Liptak Z., Warner J., Guttmann C.R.G.

Oct-2008

CNI, NAC, SLICER

J Med Primatol. 2008 Oct;37(5):250-60.

The Relationship between Diffusion Tensor Imaging and Volumetry as Measures of White Matter Properties

Fjell A.M., Westlye L.T., Greve D.N., Fischl B., Benner T., van der Kouwe A.J.W., Salat D., Bjørnerud A., Due-Tønnessen P., Walhovd K.B.

Oct-2008

SLICER

Neuroimage. 2008 Oct 1;42(4):1654-68.

3D Modeling-based Surgical Planning in Transsphenoidal Pituitary Surgery - Preliminary Results

Raappana A., Koivukangas J., Pirilä T.

Sep-2008

SLICER

Acta Otolaryngol. 2008 Sep;128(9):1011-8.

Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI

Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N.

Sep-2008

NCIGT, NA-MIC, NAC, Prostate Group, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709.

MRI Assessment of Superior Temporal Gyrus in Williams Syndrome

Sampaio A., Sousa N., Férnandez M., Vasconcelos C., Shenton M.E., Gonçalves O.F.

Sep-2008

PNL, SLICER

Cogn Behav Neurol. 2008 Sep;21(3):150-6.

A Generic Framework for Internet-based Interactive Applications of High-resolution 3-D Medical Image Data

Liu D., Hua K.A., Sugaya K.

Sep-2008

SLICER

IEEE Trans Inf Technol Biomed. 2008 Sep;12(5):618-26.

Auditory Processing Abnormalities in Schizotypal Personality Disorder: An fMRI Experiment using Tones of Deviant Pitch and Duration

Dickey C.C., Mórocz I.A., Niznikiewicz M.A., Voglmaier M.M., Toner S., Khan U., Dreusicke M., Yoo S-S., Shenton M.E., McCarley R.W.

Aug-2008

PNL, CAFE, SLICER

Schizophr Res. 2008 Aug;103(1-3):26-39.

A Cross-Sectional and Longitudinal Magnetic Resonance Imaging Study of Cingulate Gyrus Gray Matter Volume Abnormalities in First-Episode Schizophrenia and First-Episode Affective Psychosis

Koo M-S., Levitt J.J., Salisbury D.F., Nakamura M., Shenton M.E., McCarley R.W.

Jul-2008

PNL, SLICER

Arch Gen Psychiatry. 2008 Jul;65(7):746-60.

Rosenberger G., Kubicki M., Nestor P.G., Connor E., Bushell G.B., Markant D., Niznikiewicz M., Westin C-F., Kikinis R., Saykin A.J., McCarley R.W., Shenton M.E.

Jul-2008

PNL, LMI, NA-MIC, NAC, SLICER, SPL

Schizophr Res. 2008 Jul;102(1-3):181-8.

Image Guided Therapy in Slicer3: Advanced Tutorial on Navigation using OpenIGTLink

Pace D., Tokuda J., Liu H., Hata N.

Jun-2008

NA-MIC, Download Data, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 June;

Image Guided Therapy in Slicer3: Introduction to Navigation using OpenIGTLink

Pace D., Tokuda J., Liu H., Hata N.

Jun-2008

NA-MIC, Download Data, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 June;

A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis

Maddah M., Zöllei L., Grimson W.E.L., Westin C-F., Wells III W.M.

May-2008

SPL, LMI, NA-MIC, NAC, NCIGT, SLICER

Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2008; 105-108.

Pneumatically Operated MRI-Compatible Needle Placement Robot for Prostate Interventions

Fischer G.S., Iordachita I., Csoma C., Tokuda J., Mewes P.W., Tempany C.M., Hata N., Fichtinger G.

May-2008

NCIGT, Prostate Group, SLICER, SNR, SPL

IEEE Int Conf Robot Autom. 2008;2489-2495.

iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources

Dinov I.D., Rubin D., Lorensen W.E., Dugan J., Ma J., Murphy S., Kirschner B., Bug W., Sherman M., Floratos A., Kennedy D., Jagadish H.V., Schmidt J., Athey B., Califano A., Musen M., Altman R., Kikinis R., Kohane I., Delp S., Parker D.S., Toga A.W.

May-2008

NA-MIC, NAC, SLICER, SPL

PLoS ONE 2008 May; 3(5): e2265.

Intrauterine Growth Restriction Affects the Preterm Infant's Hippocampus

Lodygensky G.A., Seghier M.L., Warfield S.K., Tolsa C.B., Sizonenko S., Lazeyras F., Huppi P.S.

Apr-2008

CRL, NAC, SLICER

Pediatr Res. 2008 Apr;63(4):438-43.

A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults

Jolley M., Stinstra J., Pieper S., Macleod R., Brooks D.H., Cecchin F., Triedman J.K.

Apr-2008

SLICER, NA-MIC, NAC

Heart Rhythm. 2008 Apr;5(4):565-572.

SPL-PNL Brain Atlas

Talos I-F., Jakab M., Kikinis R., Shenton M.E.

Mar-2008

SPL, Download Data, NAC, PNL, SLICER

SPL-PNL March;

A National Human Neuroimaging Collaboratory Enabled by the Biomedical Informatics Research Network (BIRN)

Keator D.B., Grethe J.S., Marcus D., Ozyurt B., Gadde S., Murphy S., Pieper S., Greve D., Notestine R., Bockholt H.J., Papadopoulos P.

Mar-2008

SLICER, NA-MIC, SPL

IEEE Trans Inf Technol Biomed. 2008 March ; 12(2): 162–172.

SPL Abdominal Atlas

Talos I-F., Jakab M., Kikinis R.

Mar-2008

SPL, Download Data, NAC, SLICER

SPL 2008 March;

MR-guided Prostate Interventions

Tempany C.M., Straus S., Hata N., Haker S.

Feb-2008

Prostate Group, NA-MIC, NCIGT, SLICER, SNR

J Magn Reson Imaging, 2008 Feb;27(2):356-67.

Segmentation of Subtraction Images for the Measurement of Lesion Change in Multiple Sclerosis

Duan Y., Hildenbrand P.G., Sampat M.P., Tate D.F., Csapo I., Moraal B., Bakshi R., Barkhof F., Meier D.S., Guttmann C.R.G.

Feb-2008

CNI, NAC, SLICER

AJNR Am J Neuroradiol. 2008 Feb;29(2):340-6.

Using Magnetic Resonance Microscopy to Study the Growth Dynamics of a Glioma Spheroid in Collagen I: A Case Study

Huang S., Vader D., Wang Z., Stemmer-Rachamimov A., Weitz D.A., Dai G., Rosen B.R., Deisboeck T.S.

Jan-2008

SLICER

BMC Med Imaging. 2008 Jan 29;8:3.

Orbitofrontal Volume Deficit in Schizophrenia and Thought Disorder

Nakamura M., Nestor P.G., Levitt J.J., Cohen A.S., Kawashima T., Shenton M.E., McCarley R.W.

Jan-2008

PNL, SLICER

Brain. 2008 Jan;131(Pt 1):180-95.

Lowering the Barriers Inherent in Translating Advances in Neuroimage Analysis to Clinical Research Applications

Pujol S., Kikinis R., Gollub R.L.

Jan-2008

NA-MIC, NAC, SLICER, SPL

Acad Radiol. 2008 Jan;15(1):114-8.

Title

Authors

2007

Collection

Reference

Automated Segmentation of Brain Tumors

Kaus M.R., Warfield S.K., Nabavi A., Black P.M., Jolesz F.A., Kikinis R.

Dec-2007

SPL, CRL, Download Data, NAC, NCIGT, SLICER

SPL 2007 December;

CAVASS: A Computer-assisted Visualization and Analysis Software System

Grevera G., Udupa J., Odhner D., Zhuge Y., Souza A., Iwanaga T., Mishra S.

Nov-2007

SLICER

J Digit Imaging. 2007 Nov;20 Suppl 1:101-18.

Towards Scarless Surgery: An Endoscopic Ultrasound Navigation System for Transgastric Access Procedures

San José Estépar R., Stylopoulos N., Ellis R., Samset E., Westin C-F., Thompson C., Vosburgh K.G.

Nov-2007

LMI, CIGL, NAC, SLICER

Comput Aided Surg. 2007 Nov;12(6):311-24.

The Open-source Neuroimaging Research Enterprise

Marcus D.S., Archie K.A., Olsen T.R., Ramaratnam M.

Nov-2007

SLICER

J Digit Imaging. 2007 Nov;20 Suppl 1:130-8.

3D Visualization and Simulation of Frontoorbital Advancement in Metopic Synostosis

Rodt T., Schlesinger A., Schramm A., Diensthuber M., Rittierodt M., Krauss J.K.

Nov-2007

SLICER

Childs Nerv Syst. 2007 Nov;23(11):1313-7.

Non-rigid Registration of Pre-procedural MR Images with Intra- procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations

Archip N., Tatli S., Morrison P.R., Jolesz F.A., Warfield S.K., Silverman S.G.

Oct-2007

NCIGT, CRL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 2):969-77.

Neocortical Gray Matter Volume in First-Episode Schizophrenia and First-Episode Affective Psychosis: A Cross-Sectional and Longitudinal MRI Study

Nakamura M., Salisbury D.F., Hirayasu Y., Bouix S., Pohl K.M., Yoshida T., Koo M-S., Shenton M.E., McCarley R.W.

Oct-2007

PNL, SLICER

Biol Psychiatry. 2007 Oct 1;62(7):773-83.

A White Matter Stochastic Tractography System

Ngo T.M., Westin C-F., Golland P.

Oct-2007

LMI, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(WS):94-104.

Application of Open Source Image Guided Therapy Software in MR-guided Therapies

Hata N., Pieper S., Jolesz F.A., Tempany C.M., Black P.M., Morikawa S., Iseki H., Hashizume M., Kikinis R.

Oct-2007

SNR, NA-MIC, NAC, NCIGT, Prostate Group, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 1):491-8.

Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle

Melonakos J., Mohan V., Niethammer M., Smith K., Kubicki M., Tannenbaum A.

Oct-2007

NAC, NA-MIC, PNL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 1):36-43.

Prior Knowledge Driven Multiscale Segmentation of Brain MRI

Akselrod-Ballin A., Galun M., Gomori J.M., Brandt A., Basri R.

Oct-2007

Miscellaneous, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 2):118-26.

MindSeer: A Portable and Extensible Tool for Visualization of Structural and Functional Neuroimaging Data

Moore E.B., Poliakov A.V., Lincoln P., Brinkley J.F.

Oct-2007

SLICER

BMC Bioinformatics. 2007 Oct 15;8:389.

Creating Physical 3D Stereolithograph Models of Brain and Skull

Kelley D.J., Farhoud M., Meyerand M.E., Nelson D.L., Ramirez L.F., Dempsey R.J., Wolf A.J., Alexander A.L., Davidson R.J.

Oct-2007

SLICER

PLoS ONE. 2007 Oct 31;2(10):e1119.

Quantitative Comparison of Functional MRI and Direct Electrocortical Stimulation for Functional Mapping

Larsen S.E., Kikinis R., Talos I-F., Weinstein D., Wells III W.M., Golby A.J.

Sep-2007

SPL, NAC, NCIGT, SLICER

Int J Med Robot. 2007 Sep;3(3):262-70.

A Detailed 3D Model of the Guinea Pig Cochlea

Liu B., Gao X.L., Yin H.X., Luo S.Q., Lu J.

Sep-2007

SLICER

Brain Struct Funct. 2007 Sep;212(2):223-30.

A Hierarchical Algorithm for MR Brain Image Parcellation

Pohl K.M., Bouix S., Nakamura M., Rohlfing T., McCarley R.W., Kikinis R., Grimson W.E.L., Shenton M.E., Wells III W.M.

Sep-2007

SPL, NA-MIC, NAC, PNL, SLICER

IEEE Transactions on Medical Imaging. 2007 Sept;26(9):1201-1212.

Challenges in Image-guided Therapy System Design

DiMaio S.P., Kapur T., Cleary K., Aylward S.R., Kazanzides P., Vosburgh K.G., Ellis R., Duncan J., Farahani K., Lemke H., Peters T., Lorensen W.E., Gobbi D.G., Haller J., Clarke L., Pizer S., Taylor R., Galloway Jr R., Fichtinger G., Hata N., Lawson K., Tempany C.M., Kikinis R., Jolesz F.A.

Sep-2007

NCIGT, CIGL, NA-MIC, NAC, Prostate Group, SLICER, SNR, SPL

NeuroImage 2007; 37(Suppl 1):S144-S151.

Surface Rendering-based Virtual Intraventricular Endoscopy: Retrospective Feasibility Study and Comparison to Volume Rendering-based Approach

Nakajima N., Wada J., Miki T., Haraoka J., Hata N.

Aug-2007

SNR, NCIGT, SLICER

NeuroImage 2007; 37(Suppl 1):S89-S99.

Volumetric Non-Rigid Registration for MRI-Guided Brain Tumor Surgery

Talos I-F., Archip N.

Aug-2007

SPL, Download Data, NAC, NCIGT, SLICER

SPL 2007 August;

Evaluation of Different Meshing Algorithms in the Computation of Defibrillation Thresholds in Children

Stinstra J.G., Jolley M., Callahan M., Weinstein D., Cole M., Brooks D.H., Triedman J., Macleod R.S.

Aug-2007

SPL, SLICER

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:1422-5.

Object Naming is a More Sensitive Measure of Speech Localization than Number Counting: Converging Evidence from Direct Cortical Stimulation and FMRI

Petrovich Brennan N.M., Whalen S., de Morales Branco D., O'Shea J.P., Norton I.H., Golby A.J.

Aug-2007

NCIGT, SLICER

Neuroimage. 2007; 37( Suppl 1):S100-8.

Displacement of Brain Regions in Preterm Infants with Non-synostotic Dolichocephaly Investigated by MRI

Mewes A.U.J., Zöllei L., Huppi P.S., Als H., McAnulty G.B., Inder T.E., Wells III W.M., Warfield S.K.

Jul-2007

CRL, NAC, NCIGT, SLICER, SPL

Neuroimage. 2007 Jul 15;36(4):1074-1085.

On Evaluating Brain Tissue Classifiers without a Ground Truth

Bouix S., Martin-Fernández M., Ungar L., Nakamura M., Koo M.S., McCarley R.W., Shenton M.E.

Jul-2007

PNL, NA-MIC, NAC, SLICER

Neuroimage. 2007 Jul 15;36(4):1207-1224.

Active Mean Fields: Solving the Mean Field Approximation in the Level Set Framework

Pohl K.M., Kikinis R., Wells III W.M.

Jul-2007

SPL, NA-MIC, NAC, NCIGT, SLICER

Inf Process Med Imaging. 2007;20:26-37.

Occipital Lobe Gray Matter Volume in Male Patients with Chronic Schizophrenia: A Quantitative MRI Study

Onitsuka T., McCarley R.W., Kuroki N., Dickey C.C., Kubicki M., Demeo S.S., Frumin M., Kikinis R., Jolesz F.A., Shenton M.E.

May-2007

PNL, NA-MIC, NAC, NCIGT, SLICER, SPL

Schizophr Res. 2007 May;92(1-3):197-206.

EUS with CT Improves Efficiency and Structure Identification over Conventional EUS

Vosburgh K.G., Stylopoulos N., San José Estépar R., Ellis R.E., Samset E., Thompson C.C.

May-2007

CIGL, SLICER

Gastrointest Endosc. 2007 May;65(6):866-70.

Episodic Memory and Neuroimaging of Hippocampus and Fornix in Chronic Schizophrenia

Nestor P.G., Kubicki M., Kuroki N., Gurrera R.J., Niznikiewicz M., Shenton M.E., McCarley R.W.

May-2007

PNL, SLICER

Psychiatry Res. 2007 May 15;155(1):21-8.

Non-rigid Alignment of Pre-operative MRI, fMRI, and DT-MRI with Intra-operative MRI for Enhanced Visualization and Navigation in Image-guided Neurosurgery

Archip N., Clatz O., Whalen S., Kacher D., Fedorov A., Kot A., Chrisochoides N., Jolesz F.A., Golby A.J., Black P.M., Warfield S.K.

Apr-2007

CRL, NAC, NCIGT, SLICER

Neuroimage. 2007 Apr 1;35(2):609-624.

Multiscale 3D Shape Representation and Segmentation using Spherical Wavelets

Nain D., Haker S., Bobick A., Tannenbaum A.

Apr-2007

SPL, NA-MIC, NAC, NCIGT, SLICER

IEEE Trans Med Imaging. 2007 Apr;26(4):598-618.

Volumetric Assessment of Tumor Infiltration of Adjacent White Matter Based on Anatomic MRI and Diffusion Tensor Tractography

Talos I-F., Zou K.H., Kikinis R., Jolesz F.A.

Apr-2007

SPL, NAC, NCIGT, SLICER

Acad Radiol. 2007 Apr;14(4):431-6.

Longitudinal in vivo Reproducibility of Cartilage Volume and Surface in Osteoarthritis of the Knee

Brem M.H., Pauser J., Yoshioka H., Brenning A., Stratmann J., Hennig F.F., Kikinis R., Duryea J., Winalski C.S., Lang P.

Apr-2007

SPL, NA-MIC, NAC, SLICER

Skeletal Radiol. 2007 Apr;36(4):315-20.

Functional Brain Mapping and Its Applications to Neurosurgery

Tharin S., Golby A.J.

Apr-2007

SPL, NCIGT, SLICER

Neurosurgery. 2007 Apr;60(4 Suppl 2):185-201; discussion 201-2.

Perinatal Risk Factors Altering Regional Brain Structure in the Preterm Infant

Thompson D.K., Warfield S.K., Carlin J.B., Pavlovic M., Wang H.X., Bear M., Kean M.J., Doyle L.W., Egan G.F., Inder T.E.

Mar-2007

CRL, NAC, SLICER

Brain. 2007 Mar;130(Pt 3):667-77

Registered, Sensor-Integrated Virtual Reality for Surgical Applications

King B.W., Reisner L.A., Klein M.D., Auner G.W., Pandya A.K.

Mar-2007

SLICER

Proceedings of the International Conference and Exhibition in Virtual Reality 2007; 277-278.

Morphology, Constraints, and Scaling of Frontal Sinuses in the Hartebeest, Alcelaphus Buselaphus (Mammalia: Artiodactyla, Bovidae)

Farke A.A.

Mar-2007

SPL, SLICER

J Morphol. 2007 Mar;268(3):243-53.

A Preliminary Study on the Relationship between Nasal Cavity and Maxillary Sinus Volumes

Butaric L., Broadfield D., McCarthy R.

Mar-2007

SLICER

Proceedings of the 76th Annual Meeting of the American Association of Physical Anthropologists 2007;

Origin and Insertion Points Involved in Levator Ani Muscle Defects

Margulies R.U., Huebner M., DeLancey J.O.L.

Mar-2007

SLICER

Am J Obstet Gynecol. 2007 Mar;196(3):251.e1-5.

Altered Orbitofrontal Sulcogyral Pattern in Schizophrenia

Nakamura M., Nestor P.G., McCarley R.W., Levitt J.J., Hsu L., Kawashima T., Niznikiewicz M., Shenton M.E.

Mar-2007

SPL, NA-MIC, PNL, SLICER

Brain. 2007 Mar;130(Pt 3):693-707.

The Uncinate Fasciculus and Extraversion in Schizotypal Personality Disorder: A Diffusion Tensor Imaging Study

Gurrera R.J., Nakamura M., Kubicki M., Dickey C.C., Niznikiewicz M.A., Voglmaier M.M., McCarley R.W., Shenton M.E., Westin C-F., Maier S.E., Seidman L.J.

Feb-2007

PNL, LMI, MIPG, NA-MIC, SLICER

Schizophr Res. 2007 Feb;90(1-3):360-2.

Attentional Networks and Cingulum Bundle in Chronic Schizophrenia

Nestor P.G., Kubicki M., Spencer K.M., Niznikiewicz M., McCarley R.W., Shenton M.E.

Feb-2007

PNL, SLICER

Schizophr Res. 2007 Feb;90(1-3):308-15.

MRI Abnormalities of the Hippocampus and Cavum Septi Pellucidi in Females with Schizotypal Personality Disorder

Dickey C.C., McCarley R.W., Xu M.L., Seidman L.J., Voglmaier M.M., Niznikiewicz M.A., Connor E., Shenton M.E.

Jan-2007

PNL, SLICER

Schizophr Res. 2007 Jan;89(1-3):49-58.

A Review of Diffusion Tensor Imaging Studies in Schizophrenia

Kubicki M., McCarley R.W., Westin C-F., Park H-J., Maier S.E., Kikinis R., Jolesz F.A., Shenton M.E.

Jan-2007

PNL, LMI, MIPG, NAC, NCIGT, SLICER, SPL

J Psychiatr Res. 2007 Jan-Feb;41(1-2):15-30.

Development of a Three-dimensional Multiscale Agent-based Tumor Model: Simulating Gene-protein Interaction Profiles, Cell Phenotypes and Multicellular Patterns in Brain Cancer

Zhang L., Athale C.A., Deisboeck T.S.

Jan-2007

SPL, SLICER

J Theor Biol. 2007 Jan 7;244(1):96-107.

Title

Authors

2006

Collection

Reference

Middle and Inferior Temporal Gyrus Gray Matter Volume Abnormalities in First-Episode Schizophrenia: An MRI Study

Kuroki N., Shenton M.E., Salisbury D.F., Hirayasu Y., Onitsuka T., Ersner-Hershfield H., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W.

Dec-2006

SPL, NA-MIC, NAC, NCIGT, PNL, SLICER

Am J Psychiatry. 2006 Dec;163(12):2103-10.

Volume of Cerebellar Vermis in Monozygotic Twins Discordant for Combat Exposure: Lack of Relationship to Post-traumatic Stress Disorder

Levitt J.J., Chen Q.C., May F.S., Gilbertson M.W., Shenton M.E., Pitman R.K.

Dec-2006

PNL, SLICER

Psychiatry Res. 2006 Dec 1;148(2-3):143-9.

Regionally Specific Atrophy of the Corpus Callosum in AD, MCI and Cognitive Complaints

Wang P.J., Saykin A.J., Flashman L.A., Wishart H.A., Rabin L.A., Santulli R.B., McHugh T.L., MacDonald J.W., Mamourian A.C.

Nov-2006

PNL, SLICER

Neurobiol Aging. 2006 Nov;27(11):1613-7.

Early Detection of Schizophrenia by Diffusion Weighted Imaging

DeLisi L.E., Szulc K.U., Bertisch H., Majcher M., Brown K., Bappal A., Branch C.A., Ardekani B.A.

Nov-2006

SLICER

Psychiatry Res. 2006 Nov 22;148(1):61-6.

Accurate Airway Wall Estimation using Phase Congruency

San José Estépar R., Washko G.G., Silverman E.K., Reilly J.J., Kikinis R., Westin C-F.

Oct-2006

SPL, LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):125-34.

Liver Metastases: 3D Shape-based Analysis of CT Scans for Detection of Local Recurrence after Radiofrequency Ablation

Bricault I., Kikinis R., Morrison P.R., Vansonnenberg E., Tuncali K., Silverman S.G.

Oct-2006

SLICER, NAC, NCIGT, SPL

Radiology. 2006 Oct;241(1):243-50.

Quantification of Levator Ani Cross-sectional Area Differences between Women with and those without Prolapse

Hsu Y., Chen L., Huebner M., Ashton-Miller J.A., DeLancey J.O.L.

Oct-2006

SLICER

Obstet Gynecol. 2006 Oct;108(4):879-83.

Atlas Guided Identification of Brain Structures by Combining 3D Segmentation and SVM Classification

Akselrod-Ballin A., Galun M., Gomori M.J., Basri R., Brandt A.

Oct-2006

SLICER, Miscellaneous

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):209-16.

Novel Image Processing Techniques to Better Understand White Matter Disruption in Multiple Sclerosis

Goldberg-Zimring D., Warfield S.K.

Oct-2006

CRL, NAC, SLICER

Autoimmun Rev. 2006 Oct;5(8):544-8.

Smaller Neocortical Gray Matter and Larger Sulcal Cerebrospinal Fluid Volumes in Neuroleptic-naive Women with Schizotypal Personality Disorder

Koo M-S., Dickey C.C., Park H-J., Kubicki M., Ji N.Y., Bouix S., Pohl K.M., Levitt J.J., Nakamura M., Shenton M.E., McCarley R.W.

Oct-2006

PNL, SLICER

Arch Gen Psychiatry. 2006 Oct;63(10):1090-100.

3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography

Dauguet J., Peled S., Berezovskii V., Delzescaux T., Warﬁeld S.K., Born R., Westin C-F.

Oct-2006

NA-MIC, LMI, NAC, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):109-16.

Affine and Deformable Registration Based on Polynomial Expansion

Farnebäck G., Westin C-F.

Oct-2006

SPL, LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):857-64.

Toward Real-Time Image Guided Neurosurgery using Distributed and Grid Computing

Chrisochoides N., Fedorov A., Kot A., Archip N., Black P.M., Clatz O., Golby A.J., Kikinis R., Warfield S.K.

Oct-2006

SPL, CRL, NAC, SLICER

Proceedings of the ACM/IEEE conference on Supercomputing 2006; 37-50.

Towards Scarless Surgery: An Endoscopic-Ultrasound Navigation System for Transgastric Access Procedures

San José Estépar R., Washko G.G., Silverman E.K., Reilly J.J., Kikinis R., Westin C-F.

Oct-2006

SPL, CIGL, LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):445-53.

Characterizing the Shape of Anatomical Structures with Poisson’s Equation

Haidar H., Bouix S., Levitt J.J., McCarley R.W., Shenton M.E., Soul J.S.

Oct-2006

PNL, NA-MIC, SLICER

IEEE Trans Med Imaging. 2006 Oct;25(10):1249-57.

High-Dimensional White Matter Atlas Generation and Group Analysis

O'Donnell L., Westin C-F.

Oct-2006

LMI, NA-MIC, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):243-51.

Fiber Bundle Estimation and Parameterization

Niethammer M., Bouix S., Westin C-F., Shenton M.E.

Oct-2006

PNL, LMI, NA-MIC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):252-9.

Diffusion k-tensor Estimation from Q-ball Imaging Using Discretized Principal Axes

Bergmann O., Kindlmann G., Lundervold A., Westin C-F.

Oct-2006

LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):268-75.

Segmentation of Thalamic Nuclei from DTI Using Spectral Clustering

Ziyan U., Tuch D., Westin C-F.

Oct-2006

LMI, NA-MIC, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):807-14.

Image-guided Neurosurgery at Brigham and Women’s Hospital

DiMaio S.P., Archip N., Hata N., Talos I-F., Warfield S.K., Majumdar A., Mcdannold N., Hynynen K., Morrison P.R., Wells III W.M., Kacher D.F., Ellis R.E., Golby A.J., Black P.M., Jolesz F.A., Kikinis R.

Sep-2006

NCIGT, CRL, FUS, NA-MIC, NAC, SLICER, SNR, SPL

IEEE Eng Med Biol Mag. 2006 Sep-Oct;25(5):67-73.

Diffusion Tensor Visualization with Glyph Packing

Kindlmann G., Westin C-F.

Sep-2006

LMI, NAC, NCIGT, SLICER

IEEE Trans Vis Comput Graph 2006 Sep-Oct;12(5):1329-35.

A Kernel-Based Approach for User-Guided Fiber Bundling using Diffusion Tensor Data

San José Estépar R., Kubicki M., Shenton M.E., Westin C-F.

Sep-2006

LMI, NAC, PNL, SLICER

Conf Proc IEEE Eng Med Biol Soc. 2006;1:2626-9.

Image Based Modeling of Defibrillation in Children

Jolley M., Triedman J., Westin C-F., Weinstein D.M., MacLeod R., Brooks D.

Sep-2006

SPL, LMI, NA-MIC, SLICER

Conf Proc IEEE Eng Med Biol Soc. 2006;1:2564-7.

Automated Segmentation of Multiple Sclerosis Lesion Subtypes with Multichannel MRI

Wu Y., Warfield S.K., Tan I.L., Wells III W.M., Meier D.S., van Schijndel R.A., Barkhof F., Guttmann C.R.G.

Sep-2006

CNI, CRL, NAC, SLICER, SPL

Neuroimage. 2006 Sep;32(3):1205-15.

MRI Time Series Modeling of MS Lesion Development

Meier D.S., Guttmann C.R.G.

Aug-2006

CNI, NAC, SLICER

Neuroimage. 2006 Aug 15;32(2):531-7.

A Bayesian Approach for Stochastic White Matter Tractography

Friman O., Farnebäck G., Westin C-F.

Aug-2006

SPL, LMI, NAC, SLICER

IEEE Trans Med Imaging. 2006 Aug;25(8):965-78.

Functional MRI of Memory in the Hippocampus: Laterality Indices May Be More Meaningful if Calculated from Whole Voxel Distributions

Branco D.M., Suarez R.O., Whalen S., O'Shea J.P., Nelson A.P., da Costa J.C., Golby A.J.

Aug-2006

NCIGT, SLICER

Neuroimage. 2006 Aug 15;32(2):592-602.

Reduction of Caudate Nucleus Volumes in Neuroleptic-naïve Female Subjects with Schizotypal Personality Disorder

Koo M-S., Levitt J.J., McCarley R.W., Seidman L.J., Dickey C.C., Niznikiewicz M.A., Voglmaier M.M., Zamani P., Long K.R., Kim S.S., Shenton M.E.

Jul-2006

PNL, SLICER

Biol Psychiatry. 2006 Jul 1;60(1):40-8.

Fornix Integrity and Hippocampal Volume in Male Schizophrenic Patients

Kuroki N., Kubicki M., Nestor P.G., Salisbury D.F., Park H-J., Levitt J.J., Woolston S., Frumin M., Niznikiewicz M., Westin C-F., Maier S.E., McCarley R.W., Shenton M.E.

Jul-2006

PNL, LMI, NA-MIC, SLICER

Biol Psychiatry. 2006 Jul 1;60(1):22-31.

Habitual Use of the Primate Forelimb is Reflected in the Material Properties of Subchondral Bone in the Distal Radius

Carlson K.J., Patel B.A.

Jun-2006

SLICER

J Anat. 2006 Jun;208(6):659-70.

A Ceratopsid Dinosaur Parietal from New Mexico and its Implications for Ceratopsid Biogeography and Systematics

Farke A.A., Williamson T.E.

Jun-2006

SLICER

Journal of Vertebrate Paleontology 2006; 26:1018-1020.

Developmental Response to Cold Stress in Cranial Morphology of Rattus: Implications for the Interpretation of Climatic Adaptation in Fossil Hominins

Rae T.C., Vidarsdottir U.S., Jeffery A. N., Steegmann Jr T.

Jun-2006

SLICER

Proceedings of the Royal Society B: Biological Sciences 2006; 273:2605-2610.

A Preliminary DTI Study Showing no Brain Structural Change Associated with Adolescent Cannabis Use

DeLisi L.E., Bertisch H.C., Szulc K.U., Majcher M., Brown K., Bappal A., Ardekani B.A.

May-2006

SLICER

Harm Reduct J. 2006 May 9;3:17.

Cerebral White Matter Analysis Using Diffusion Imaging

O'Donnell L.

May-2006

LMI, NA-MIC, NAC, SLICER

Ph.D. Thesis, MIT, 2006.

Supratentorial Low-Grade Glioma Resectability: Statistical Predictive Analysis Based on Anatomic MR Features and Tumor Characteristics

Talos I-F., Zou K.H., Ohno-Machado L., Bhagwat J.G., Kikinis R., Black P.M., Jolesz F.A.

May-2006

NAC, NCIGT, SLICER, SPL

Radiology. 2006 May;239(2):506-13.

A Method for Clustering White Matter Fiber Tracts

O'Donnell L., Kubicki M., Shenton M.E., Dreusicke M.H., Grimson W.E.L., Westin C-F.

May-2006

SPL, LMI, NA-MIC, NAC, PNL, SLICER

AJNR Am J Neuroradiol. 2006 May;27(5):1032-6.

Magnetic Resonance and the Human Brain: Anatomy, Function and Metabolism

Talos I-F., Mian A.Z., Zou K.H., Hsu L., Goldberg-Zimring D., Haker S., Bhagwat J.G., Mulkern R.V.

May-2006

NAC, NCIGT, SLICER, SPL

Cell Mol Life Sci. 2006 May;63(10):1106-24. Review.

Appearance of the Levator Ani Muscle Subdivisions in Magnetic Resonance Images

Margulies R.U., Hsu Y., Kearney R., Stein T., Umek W.H., DeLancey J.O.L.

May-2006

SLICER

Obstet Gynecol. 2006 May;107(5):1064-9.

The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as an Open Platform for the Medical Image Computing Community

Pieper S., Lorensen W.E., Schroeder W., Kikinis R.

Apr-2006

SPL, NA-MIC, NAC, SLICER

Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 698-701.

Measurement of Cortical Thickness in 3D Brain MRI Data: Validation of the Laplacian Method

Haidar H., Soul J.S.

Apr-2006

SPL, SLICER

J Neuroimaging. 2006 Apr;16(2):146-53.

Segmentation of Newborn Brain MRI

Weisenfeld N.I., Mewes A.U.J., Warﬁeld S.K.

Apr-2006

SPL, CRL, NAC, SLICER

Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 766-769.

Measurement of the Pubic Portion of the Levator ani Muscle in Women with Unilateral Defects in 3D Models from MR Images

Chen L., Hsu Y., Ashton-Miller J.A., DeLancey J.O.L.

Mar-2006

SLICER

Int J Gynaecol Obstet. 2006 Mar;92(3):234-41.

Finite-element-method (FEM) Model Generation of Time-resolved 3D Echocardiographic Geometry Data for Mitral-valve Volumetry

Verhey J.F., Nathan N.S., Rienhoff O., Kikinis R., Rakebrandt F., D'Ambra M.N.

Mar-2006

SPL, NAC, NCIGT, SLICER

Biomed Eng Online. 2006 Mar 3;5:17.

Functional and Structural Deficits in Brain Regions Subserving Face Perception in Schizophrenia

Onitsuka T., Niznikiewicz M.A., Spencer K.M., Frumin M., Kuroki N., Lucia L.C., Shenton M.E., McCarley R.W.

Mar-2006

SPL, PNL, SLICER

Am J Psychiatry. 2006 Mar;163(3):455-62.

Integrated Image and function-guided Surgery in Eloquent Cortex: A Technique Report

O'Shea J.P., Whalen S., Branco D.M., Petrovich N., Knierim K., Golby A.J.

Mar-2006

NCIGT, SLICER

Int J Med Robot. 2006 Mar;2(1):75-83.

A Dorsolateral Prefrontal Cortex Semi-Automatic Segmenter

Al-Hakim R., Nain D., Melonakos J., Tannenbaum A., Fallon J.H.

Feb-2006

NA-MIC, SLICER

Proceedings of SPIE Medical Imaging 2006; 6144:170-177.

A Web Portal that Enables Collaborative Use of Advanced Medical Image Processing and Informatics Tools through the Biomedical Informatics Research Network (BIRN)

Murphy S.N., Mendis M.E., Grethe J.S., Gollub R.L., Kennedy D., Rosen B.R.

Jan-2006

SLICER

Proceedings of AMIA Annu Symp 2006;579-83.

Preliminary Study on Digitized Nasal and Temporal Bone Anatomy

Li X-P., Han D-M., Xia Y., Zhou G-H.

Jan-2006

SLICER

Clin Anat. 2006 Jan;19(1):32-6.

Title

Authors

2005

Collection

Reference

Reproducibility of Functional MR Imaging: Preliminary Results of Prospective Multi-institutional Study Performed by Biomedical Informatics Research Network

Zou K.H., Greve D.N., Wang M., Pieper S.D., Warfield S.K., White N.S., Manandhar S., Brown G.G., Vangel M.G., Kikinis R., Wells III W.M.

Dec-2005

NAC, CRL, SLICER, SPL

Radiology. 2005 Dec;237(3):781-9.

The Application of DTI to Investigate White Matter Abnormalities in Schizophrenia

Kubicki M., Westin C-F., McCarley R.W., Shenton M.E.

Dec-2005

LMI, PNL, SLICER

Ann N Y Acad Sci. 2005 Dec;1064:134-48.

Group-Slicer: A Collaborative Extension of 3D-Slicer

Simmross-Wattenberg F., Carranza-Herrezuelo N., Palacios-Camarero C., Casaseca-de-la-Higuera P., Martin-Fernández M.A., Aja-Fernández S., Ruiz-Alzola J., Westin C-F., Alberola-López C.

Dec-2005

NAC, LMI, SLICER

J Biomed Inform. 2005 Dec;38(6):431-42.

Racial Differences in Pelvic Morphology Among Asymptomatic Nulliparous Women as Seen on Three-dimensional Magnetic Resonance Images

Hoyte L., Thomas J., Foster R.T., Shott S., Jakab M., Weidner A.C.

Dec-2005

SPL, SLICER

Am J Obstet Gynecol. 2005 Dec;193(6):2035-40.

Magnetic Resonance Imaging and 3-Dimensional Analysis of External Anal Sphincter Anatomy

Hsu Y., Fenner D.E., Weadock W.J., DeLancey J.O.L.

Dec-2005

SLICER

Obstet Gynecol. 2005 Dec;106(6):1259-65.

2D Rigid Registration of MR Scans using the 1D Binary Projections

Kotsas P.D.

Nov-2005

SLICER

Enformatika Transactions on Engineering, Computing and Technology, November 2005; 9:157-161.

Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI

Clatz O., Delingette H., Talos I-F., Golby A.J., Kikinis R., Jolesz F.A., Ayache N., Warfield S.K.

Nov-2005

SPL, CRL, NAC, NCIGT, SLICER

IEEE Trans Med Imaging. 2005 Nov;24(11):1417-27.

Automatic Segmentation Using Non-Rigid Registration

Pohl K.M., Bouix S., Shenton M.E., Grimson W.E.L., Kikinis R.

Oct-2005

SPL, NA-MIC, NAC, PNL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2005;8. Short Communications.

Impaired Trophic Interactions between the Cerebellum and the Cerebrum Among Preterm Infants

Limperopoulos C., Soul J.S., Haidar H., Huppi P.S., Bassan H., Warfield S.K., Robertson R.L., Moore M., Akins P., Volpe J.J., du Plessis A.J.

Oct-2005

NAC, CRL, SLICER

Pediatrics. 2005 Oct;116(4):844-50.

Magnetic Resonance-guided Prostate Interventions

Haker S., Mulkern R.V., Roebuck J.R., Barnes A.S., Dimaio S.P., Hata N., Tempany C.M.

Oct-2005

Prostate Group, NCIGT, SLICER, SNR

Top Magn Reson Imaging. 2005 Oct;16(5):355-68.

Knowledge-Based Segmentation of Brain MRI Scans Using the Insight Toolkit

Melonakos J., Al-Hakim R., Fallon J.H.

Oct-2005

NA-MIC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2005;8(WS). Open-Source Workshop.

DTI and MTR Abnormalities in Schizophrenia: Analysis of White Matter Integrity

Kubicki M., Park H-J., Westin C-F., Nestor P.G., Mulkern R.V., Maier S.E., Niznikiewicz M.A., Connor E.E., Levitt J.J., Frumin M., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Jul-2005

PNL, LMI, NAC, NCIGT, SLICER, SPL

Neuroimage. 2005 Jul 15;26(4):1109-18.

Three-dimensional Reconstruction and Volumetry of Intracranial Haemorrhage and its Mass Effect

Strik H.M., Borchert H., Fels C., Knauth M., Rienhoff O., Bähr M., Verhey J.F.

Jun-2005

SPL, SLICER

Neuroradiology. 2005 Jun;47(6):417-24.

Rigid Overlay of Volume Sonography and MR Image Data of the Female Pelvic Floor Using a Fiducial Based Alignment--Feasibility Due to a Case Series

Verhey J.F., Wisser J., Keller T., Westin C-F., Kikinis R.

Jun-2005

SPL, LMI, NAC, SLICER

Comput Med Imaging Graph. 2005 Jun;29(4):243-9.

Vaginal Thickness, Cross-Sectional Area, and Perimeter in Women with and Those without Prolapse

Hsu Y., Chen L., Delancey J.O.L., Ashton-Miller J.A.

May-2005

SLICER

Obstet Gynecol. 2005 May;105(5 Pt 1):1012-7.

Registration and Fusion of CT and MRI of the Temporal Bone

Bartling S.H., Peldschus K., Rodt T., Kral F., Matthies H., Kikinis R., Becker H.

May-2005

SPL, NAC, SLICER

J Comput Assist Tomogr. 2005 May-Jun;29(3):305-10.

Statistical Validation of Brain Tumor Shape Approximation via Spherical Harmonics for Image-Guided Neurosurgery

Goldberg-Zimring D., Talos I-F., Bhagwat J.G., Haker S.J., Black P.M., Zou K.H.

Apr-2005

SPL, NCIGT, SLICER

Acad Radiol. 2005 Apr;12(4):459-66.

Three-dimensional Assessment of MR Imaging-guided Percutaneous Cryotherapy using Multi-performer Repeated Segmentations: The Value of Supervised Learning

Zou K.H., Tuncali K., Warfield S.K., Zentai C.P., Worku D., Morrison P.R., Silverman S.G.

Apr-2005

CRL, NAC, SLICER

Acad Radiol. 2005 Apr;12(4):444-50.

Analysis of Skeletal Movements in Mandibular Distraction Osteogenesis

Yeshwant K.C., Seldin E.B., Gateno J., Everett P., White C.L., Kikinis R., Kaban L.B., Troulis M.J.

Mar-2005

SPL, NAC, SLICER

J Oral Maxillofac Surg. 2005 Mar;63(3):335-40.

Late Gestation Cerebellar Growth Is Rapid and Impeded by Premature Birth

Limperopoulos C., Soul J.S., Gauvreau K., Huppi P.S., Warfield S.K., Bassan H., Robertson R.L., Volpe J.J., du Plessis A.J.

Mar-2005

CRL, NAC, SLICER

Pediatrics. 2005 Mar;115(3):688-95.

Non-rigid Registration of a 3D Ultrasound and a MR Image Data Set of the Female Pelvic Floor Using a Biomechanical Model

Verhey J.F., Wisser J., Warfield S.K., Rexilius J., Kikinis R.

Mar-2005

SPL, CRL, NAC, SLICER

Biomed Eng Online. 2005 Mar 18;4(1):19.

Evidence for White Matter Abnormalities in Schizophrenia

Kubicki M., McCarley R.W., Shenton M.E.

Mar-2005

PNL, SLICER

Curr Opin Psychiatry. 2005 Mar;18(2):121-34.

A Computer-assisted Approach to Planning Multidimensional Distraction Osteogenesis

Yeshwant K.C., Seldin E.B., Kikinis R., Kaban L.B.

Mar-2005

SPL, SLICER

Atlas Oral Maxillofac Surg Clin North Am. 2005 Mar;13(1):1-12.

Quantification of Airway Diameters and 3D Airway Tree Rendering from Dynamic Hyperpolarized ³He Magnetic Resonance Imaging

Lewis T.A., Tzeng Y-S., McKinstry E.L., Tooker A.C., Hong K., Sun Y., Mansour J., Handler Z., Albert M.S.

Feb-2005

CPFI, SLICER

Magn Reson Med. 2005 Feb;53(2):474-8.

A Finite Element Method Model to Simulate Laser Interstitial Thermo Therapy in Anatomical Inhomogeneous Regions

Mohammed Y., Verhey J.F.

Jan-2005

SLICER

Biomed Eng Online. 2005 Jan 4;4(1):2.

Diffusion Tensor Magnetic Resonance Imaging in Multiple Sclerosis

Goldberg-Zimring D., Mewes A.U.J., Maddah M., Warfield S.K.

Jan-2005

CRL, NAC, SLICER

J Neuroimaging. 2005;15(4 Suppl):68S-81S.

An In Vivo MRI Study of Prefrontal Cortical Complexity in First-Episode Psychosis

Wiegand L.C., Warfield S.K., Levitt J.J., Hirayasu Y., Salisbury D.F., Heckers S., Bouix S., Schwartz D., Spencer M., Dickey C.C., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Jan-2005

PNL, CRL, NAC, NCIGT, SLICER, SPL

Am J Psychiatry. 2005 Jan;162(1):65-70.

Multiple Sclerosis Medical Image Analysis and Information Management

Liu L., Meier D., Polgar-Turcsanyi M., Karkocha P., Bakshi R., Guttmann C.R.G.

Jan-2005

CNI, NAC, SLICER

J Neuroimaging. 2005;15(4 Suppl):103S-117S.

Title

Authors

2004

Collection

Reference

DTI and Impulsivity in Schizophrenia: A First Voxelwise Correlational Analysis

Hoptman M.J., Ardekani B.A., Butler P.D., Nierenberg J., Javitt D.C., Lim K.O.

Nov-2004

SLICER

Neuroreport. 2004 Nov 15;15(16):2467-70.

Flexible Frameworks for Medical Multimedia

Halle M., Kikinis R., Plesniak W., Pieper S., McKenna M., Jolesz F.A.

Oct-2004

SPL, NA-MIC, NAC, NCIGT, SLICER

Proceedings of the 12th annual ACM International Conference on Multimedia 2004;12(4):768-775.

An Anisotropic Material Model for Image Guided Neurosurgery

Kemper C.A., Talos I-F., Golby A.J., Black P.M., Kikinis R., Grimson W.E.L., Warfield S.K.

Sep-2004

SPL, CRL, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2004;7(Pt 2):267-275.

Method for Combining Information from White Matter Fiber Tracking and Gray Matter Parcellation

Park H-J., Kubicki M., Westin C-F., Talos I-F., Brun A., Peiper S., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Sep-2004

SPL, LMI, NAC, NCIGT, PNL, SLICER

Am J Neuroradiol. 2004 Sep;25(8):1318-24.

Improved Non-rigid Registration of Prostate MRI

du Bois d'Aische A., De Craene M., Haker S., Weisenfeld N., Tempany C.M., Macq B., Warﬁeld S.K.

Sep-2004

SPL, CRL, NAC, NCIGT, Prostate Group, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2004;7(Pt 1):845-852.

Decreases in Ventricular Volume Correlate with Decreases in Ventricular Pressure in Idiopathic Normal Pressure Hydrocephalus Patients who Experienced Clinical Improvement after Implantation with Adjustable Valve Shunts

McConnell K.A., Zou K.H., Chabrerie A.V., Bailey N.O., Black P.M.

Sep-2004

NCIGT, SLICER

Neurosurgery. 2004 Sep;55(3):582-92; discussion 592-3.

Middle and Inferior Temporal Gyrus Gray Matter Volume Abnormalities in Chronic Schizophrenia: An MRI Study

Onitsuka T., Shenton M.E., Salisbury D.F., Dickey C.C., Kasai K., Toner S.K., Frumin M., Kikinis R., Jolesz F.A., McCarley R.W.

Sep-2004

SPL, NAC, PNL, SLICER

Am J Psychiatry. 2004 Sep;161(9):1603-11.

Levator ani Thickness Variations in Symptomatic and Asymptomatic Women Using Magnetic Resonance-based 3-dimensional Color Mapping

Hoyte L., Jakab M., Warfield S.K., Shott S., Flesh G., Fielding J.R.

Sep-2004

CRL, NAC, SLICER, SPL

Am J Obstet Gynecol. 2004 Sep;191(3):856-61.

A Statistically Based Flow for Image Segmentation

Pichon E., Tannenbaum A., Kikinis R.

Sep-2004

SPL, NAC, SLICER

Med Image Anal. 2004 Sep;8(3):267-74.

Abnormal Association between Reduced Magnetic Mismatch Field to Speech Sounds and Smaller Left Planum Temporale Volume in Schizophrenia

Yamasue H., Yamada H., Yumoto M., Kamio S., Kudo N., Uetsuki M., Abe O., Fukuda R., Aoki S., Ohtomo K., Iwanami A., Kato N., Kasai K.

Jun-2004

SLICER

Neuroimage. 2004 Jun;22(2):720-7.

The Tale of Phineas Gage, Digitally Remastered

Ratiu P., Talos I-F., Haker S., Lieberman D., Everett P.

May-2004

SPL, NAC, SLICER

J Neurotrauma. 2004 May;21(5):637-43.

3D SLICER

Pieper S., Halle M., Kikinis R.

Apr-2004

SPL, NAC, SLICER

Proceedings of the 1st IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2004; 632-635.

Improved Watershed Transform for Medical Image Segmentation Using Prior Information

Grau V., Mewes A.U.J., Alcañiz M., Kikinis R., Warfield S.K.

Apr-2004

SPL, CRL, NAC, SLICER

IEEE Trans Med Imaging. 2004 Apr;23(4):447-58.

Prefrontal Cortical Thickness in First-Episode Psychosis: A Magnetic Resonance Imaging Study

Wiegand L.C., Warfield S.K., Levitt J.J., Hirayasu Y., Salisbury D.F., Heckers S., Dickey C.C., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Jan-2004

PNL, CRL, NAC, NCIGT, SLICER, SPL

Biol Psychiatry. 2004 Jan 15;55(2):131-40.

Title

Authors

2003

Collection

Reference

Genetic Contribution to Cartilage Volume in Women: A Classical Twin Study

Hunter D.J., Snieder H., March L., Sambrook P.N.

Dec-2003

SLICER

Rheumatology (Oxford). 2003 Dec;42(12):1495-500.

Advanced Computer Assistance for Magnetic Resonance-guided Microwave Thermocoagulation of Liver Tumors

Morikawa S., Inubushi T., Kurumi Y., Naka S., Sato K., Demura K., Tani T., Haque H.A., Tokuda J., Hata N.

Dec-2003

SLICER, SNR

Acad Radiol. 2003 Dec;10(12):1442-9.

Progressive Decrease of Left Heschl Gyrus and Planum Temporale Gray Matter Volume in First-Episode Schizophrenia. A Longitudinal Magnetic Resonance Imaging Study

Kasai K., Shenton M.E., Salisbury D.F., Hirayasu Y., Onitsuka T., Spencer M.H., Yurgelun-Todd D.A., Kikinis R., Jolesz F.A., McCarley R.W.

Nov-2003

SPL, NAC, NCIGT, PNL, SLICER

Arch Gen Psychiatry. 2003 Aug;60(8):766-75.

Differences and Similarities in Insular and Temporal Pole MRI Gray Matter Volume Abnormalities in First-episode Schizophrenia and Affective Psychosis

Kasai K., Shenton M.E., Salisbury D.F., Onitsuka T., Toner S.K., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W.

Nov-2003

NAC, NCIGT, PNL, SLICER, SPL

Arch Gen Psychiatry. 2003 Nov;60(11):1069-77.

The Association of Cartilage Volume with Knee Pain

Hunter D.J., March L., Sambrook P.N.

Oct-2003

SLICER

Osteoarthritis Cartilage. 2003 Oct;11(10):725-9.

Holographic Video Display of Time-series Volumetric Medical Data

Plesniak W.J., Halle M., Pieper S.D., Wells III W.M., Jakab M., Meier D.S., Benton S.A., Guttmann C.R.G., Kikinis R.

Oct-2003

SPL, CNI, NAC, SLICER

Proceedings of the 14th IEEE Visualization Conference 2003;

Three-dimensional Reconstruction of Magnetic Resonance Images of the Anal Sphincter and Correlation between Sphincter Volume and Pressure

Cornella J.L., Hibner M., Fenner D.E., Kriegshauser J.S., Hentz J., Magrina J.F.

Jul-2003

SLICER

Am J Obstet Gynecol. 2003 Jul;189(1):130-5.

Surgical Navigation in the Open MRI

Nabavi A., Gering D.T., Kacher D.F., Talos I-F., Wells III W.M., Kikinis R., Black P.M., Jolesz F.A.

Jun-2003

SPL, CRL, NAC, NCIGT, SLICER, SNR

Acta Neurochir Suppl. 2003;85:121-5.

Incorporation of Diffusion Tensor MRI in Non-Rigid Registration for Image-Guided Neurosurgery

Kemper C.A.

Jun-2003

SPL, SLICER

Master's Thesis, MIT, 2003.

Three-dimensional Magnetic Resonance Imaging Assessment of Levator Ani Morphologic Features in Different Grades of Prolapse

Singh K., Jakab M., Reid W.M.N., Berger L.A., Hoyte L.

Apr-2003

SPL, SLICER

Am J Obstet Gynecol. 2003 Apr;188(4):910-5.

MR imaging-guided Focused Ultrasound Surgery of Uterine Leiomyomas: A Feasibility Study

Tempany C.M., Stewart E.A., McDannold N., Quade B.J., Jolesz F.A., Hynynen K.

Mar-2003

FUS, NCIGT, Prostate Group, SLICER

Radiology. 2003 Mar;226(3):897-905.

Planning, Simulation and Assistance with Intraoperative MRI

Chinzei K., Warfield S.K., Hata N., Tempany C.M., Jolesz F.A., Kikinis R.

Mar-2003

SNR, CRL, NAC, NCIGT, Prostate Group, SLICER, SPL

Minim Invasive Ther Allied Technol. 2003 Mar;12(1):59-64.

Progressive Decrease of Left Superior Temporal Gyrus Gray Matter Volume in Patients with First-Episode Schizophrenia

Kasai K., Shenton M.E., Salisbury D.F., Hirayasu Y., Lee C-U., Ciszewski A.A., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W.

Jan-2003

SPL, NAC, PNL, SLICER

Am J Psychiatry. 2003 Jan;160(1):156-64.

Title

Authors

2002

Collection

Reference

Diffusion Tensor Imaging and its Application to Neuropsychiatric Disorders

Kubicki M., Westin C-F., Maier S.E., Mamata H., Frumin M., Ersner-Hershfield H., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Dec-2002

SPL, LMI, NAC, NCIGT, PNL, SLICER

Harv Rev Psychiatry. 2002 Nov-Dec;10(6):324-36.

Technical Developments for MR-Guided Microwave Thermocoagulation Therapy of Liver Tumors

Morikawa S., Inubushi T., Kurumi Y., Naka S., Sato K., Tani T., Hata N., Seshan V., Haque H.A.

Sep-2002

SNR, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2002;5(Pt 2):52-59.

3D Visualisation of the Middle Ear and Adjacent Structures Using Reconstructed Multi-slice CT Datasets, Correlating 3D Images and Virtual Endoscopy to the 2D Cross-sectional Images

Rodt T., Ratiu P., Becker H., Bartling S., Kacher D.F., Anderson M., Jolesz F.A., Kikinis R.

Sep-2002

SPL, NCIGT, SLICER

Neuroradiology. 2002 Sep;44(9):783-90.

New Approaches to Estimation of White Matter Connectivity in Diffusion Tensor MRI: Elliptic PDEs and Geodesics in a Tensor-Warped Space

O'Donnell L., Haker S., Westin C-F.

Sep-2002

LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2002;5(Pt 1):459-466.

Processing and Visualization for Diffusion Tensor MRI

Westin C-F., Maier S.E., Mamata H., Nabavi A., Jolesz F.A., Kikinis R.

Jun-2002

SPL, LMI, NAC, NCIGT, SLICER

Med Image Anal. 2002 Jun;6(2):93-108.

Tumor Detection by Virtual Cystoscopy with Color Mapping of Bladder Wall Thickness

Fielding J.R., Hoyte L., Okon S.A., Schreyer A., Lee J., Zou K.H., Warfield S.K., Richie J.P., Loughlin K.R., O’Leary M.P., Doyle C.J., Kikinis R.

Feb-2002

SPL, SLICER

J Urol. 2002 Feb;167(2 Pt 1):559-62.

High-Resolution Line Scan Diffusion Tensor MR Imaging of White Matter Fiber Tract Anatomy

Mamata H., Mamata Y., Westin C-F., Shenton M.E., Kikinis R., Jolesz F.A., Maier S.E.

Jan-2002

SPL, LMI, NAC, NCIGT, PNL, SLICER

Am J Neuroradiol. 2002 Jan;23(1):67-75.

Title

Authors

2001

Collection

Reference

Evaluation of Three-dimensional Finite Element-based Deformable Registration of Pre- and Intraoperative Prostate Imaging

Bharatha A., Hirose M., Hata N., Warfield S.K., Ferrant M., Zou K.H., Suarez-Santana E., Ruiz-Alzola J., D'Amico A., Cormack R.A., Kikinis R., Jolesz F.A., Tempany C.M.

Dec-2001

SPL, NCIGT, Prostate Group, SLICER, SNR

Med Phys. 2001 Dec;28(12):2551-60.

Double Cervix and Vagina with Septate Uterus: An Uncommon Müllerian Malformation

Hundley A.F., Fielding J.R., Hoyte L.

Nov-2001

SPL, SLICER

Obstet Gynecol. 2001 Nov;98(5 Pt 2):982-5.

An Interactive Virtual Endoscopy Tool

Nain D., Haker S., Kikinis R., Grimson W.E.L.

Oct-2001

SPL, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2001;4(WS). Satellite Workshop.

Semi-Automatic Medical Image Segmentation

O'Donnell L.

Oct-2001

SPL, SLICER

Master's Thesis, MIT, 2001.

Linear Measurements in 2-dimensional Pelvic Floor imaging: The Impact of Slice Tilt Angles on measurement Reproducibility

Hoyte L., Ratiu P.

Sep-2001

SPL, SLICER

Am J Obstet Gynecol. 2001 Sep;185(3):537-44.

CURVES: Curve Evolution for Vessel Segmentation

Lorigo L.M., Faugeras O.D., Grimson W.E.L., Keriven R., Kikinis R., Nabavi A., Westin C-F.

Sep-2001

NAC, LMI, SLICER, SPL

Med Image Anal. 2001 Sep;5(3):195-206.

Variations in Levator Ani Volume and Geometry in Women: The Application of MR Based 3D Reconstruction in Evaluating Pelvic Floor Dysfunction

Hoyte L., Fielding J.R., Versi E., Mamisch C., Kolvenbach C., Kikinis R.

Aug-2001

SPL, SLICER

Arch Esp Urol. 2001 Jul-Aug;54(6):532-9.

MR Imaging-guided Prostate Biopsy with Surgical Navigation Software: Device Validation and Feasibility

Hata N., Jinzaki M., Kacher D., Cormak R., Gering D., Nabavi A., Silverman S.G., D'Amico A.V., Kikinis R., Jolesz F.A., Tempany C.M.

Jul-2001

SPL, NAC, NCIGT, Prostate Group, SLICER, SNR

Radiology. 2001 Jul;220(1):263-8.

Two- and 3-dimensional MRI Comparison of Levator Ani Structure, Volume, and Integrity in Women with Stress Incontinence and Prolapse

Hoyte L., Schierlitz L., Zou K.H., Flesh G., Fielding J.R.

Jul-2001

SPL, SLICER

Am J Obstet Gynecol. 2001 Jul;185(1):11-9.

An Integrated Visualization System for Surgical Planning and Guidance Using Image Fusion and an Open MR

Gering D.T., Nabavi A., Kikinis R., Hata N., O'Donnell L.J., Grimson W.E.L., Jolesz F.A., Black P.M., Wells III W.M.

Jun-2001

SPL, NAC, NCIGT, SLICER, SNR

J Magn Reson Imaging. 2001 Jun;13(6):967-75.

A Functional Magnetic Resonance Imaging Study of Auditory Mismatch in Schizophrenia

Wible C.G., Kubicki M., Yoo S-S., Kacher D.F., Salisbury D.F., Anderson M.C., Shenton M.E., Hirayasu Y., Kikinis R., Jolesz F.A., McCarley R.W.

Jun-2001

PNL, NCIGT, SLICER, SPL

Am J Psychiatry. 2001 Jun;158(6):938-43.

Annotation of Processed Image Data in Surgical Planning and its Visualization with a Java3D Based Browser Visualization with a Java3D Based Browser

Sennst D-A.

May-2001

SPL, SLICER

Master's Thesis, University of Heidelberg, 2001.

In-utero Three-dimensional Magnetic Resonance Imaging of Fetal Brains

Schierlitz L., Dumanli H., Robinson J.N., Burrows P.E., Schreyer A.G., Kikinis R., Jolesz F.A., Tempany C.M.

Apr-2001

SPL, NCIGT, Prostate Group, SLICER

Lancet. 2001 Apr 14;357(9263):1177-8.

Serial Intraoperative Magnetic Resonance Imaging of Brain Shift

Nabavi A., Black P.M., Gering D.T., Westin C-F., Mehta V., Pergolizzi R.S., Ferrant M., Warfield S.K., Hata N., Schwartz R.B., Wells III W.M., Kikinis R., Jolesz F.A.

Apr-2001

NAC, LMI, NCIGT, SLICER, SNR, SPL

Neurosurgery. 2001 Apr;48(4):787-97; discussion 797-8.

Automated Segmentation of MR Images of Brain Tumors

Kaus M.R., Warfield S.K., Nabavi A., Black P.M., Jolesz F.A., Kikinis R.

Feb-2001

SPL, NAC, NCIGT, SLICER

Radiology. 2001 Feb;218(2):586-91.

Advances in Biomedical Imaging

Tempany C.M., McNeil B.J.

Feb-2001

NCIGT, Prostate Group, SLICER

JAMA. 2001 Feb 7;285(5):562-7.

Integration of Interventional MRI with Computer-assisted Surgery

Jolesz F.A., Nabavi A., Kikinis R.

Jan-2001

NCIGT, NAC, SLICER, SPL

J Magn Reson Imaging. 2001 Jan;13(1):69-77.

Neurosurgical Procedures in a 0.5 Tesla, Open-Configuration Intraoperative MRI: Planning, Visualization and Navigation

Nabavi A., Kacher D.F., Gering D.T., Pergolizzi R.S.

Jan-2001

NAC, SLICER, SPL

Automedica 2001; 00:1-35.

Title

Authors

2000

Collection

Reference

Distributed Modular Computer−Integrated Surgical Robotic Systems: Architecture for Intelligent Object Distribution

Schorr O., Hata N., Bzostek A., Kumar R., Burghart C., Taylor R.H., Kikinis R.

Oct-2000

SPL, NA-MIC, NAC, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2000;3:979-987.

Distributed Modular Computer-Integrated Surgical Robotic Systems: Implementation using Modular Software and Networked Systems

Bzostek A., Kumar R., Hata N., Schorr O., Kikinis R., Taylor R.H.

Oct-2000

NAC, NA-MIC, SLICER, SNR, SPL

Int Conf Med Image Comput Comput Assist Interv. 2000;3:969-978.

Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation

Butz T., Warfield S.K., Tuncali K., Silverman S.G., van Sonnenberg E., Jolesz F.A., Kikinis R.

Oct-2000

SPL, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:317-326.

diSNei: A Collaborative Environment for Medical Images Analysis and Visualization

Alberola-López C., Cardenes R., Martın M., Martın M.A., Rodrıguez-Florido M.A., Ruiz-Alzola J.

Oct-2000

SPL, LMI, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:814-823.

Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors

Kaus M.R., Nabavi A., Mamisch C.T., Wells III W.M., Jolesz F.A., Kikinis R.

Oct-2000

SPL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:9-18.

MR Compatible Surgical Assist Robot: System Integration and Preliminary Feasibility Study

Chinzei K., Hata N., Jolesz F.A., Kikinis R.

Oct-2000

SPL, NCIGT, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2000;3:921-930.

A 3D System for Planning and Simulating Minimally-Invasive Distraction Osteogenesis of the Facial Skeleton

Everett P.C., Seldin E.B., Troulis M., Kaban L.B., Kikinis R.

Oct-2000

SPL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:1029-1039.

Transperineal Magnetic Resonance Image Guided Prostate Biopsy

D'Amico A.V., Tempany C.M., Cormack R., Hata N., Jinzaki M., Tuncali K., Weinstein M., Richie J.P.

Aug-2000

SPL, NCIGT, Prostate Group, SLICER, SNR

J Urol. 2000 Aug;164(2):385-7.

Separation of Conjoined Twins with the Twin Reversed-arterial-perfusion Sequence After Prenatal Planning with Three-dimensional Modeling

Norwitz E.R., Hoyte L.P., Jenkins K.J., van der Velde M.E., Ratiu P., Rodriguez-Thompson D., Wilkins-Haug L., Tempany C.M., Fishman S.J.

Aug-2000

SPL, NCIGT, Prostate Group, SLICER

N Engl J Med. 2000 Aug 10;343(6):399-402.

Volume Assessment of the Normal Female Cervix with MR Imaging: Comparison of the Segmentation Technique and Two Geometric Formula

Dumanli H., Fielding J.R., Gering D.T., Kikinis R.

Jul-2000

SPL, SLICER

Acad Radiol. 2000 Jul;7(7):502-5.

Planum Temporale and Heschl Gyrus Volume Reduction in Schizophrenia: A Magnetic Resonance Imaging Study of First-Episode Patients

Hirayasu Y., McCarley R.W., Salisbury D.F., Tanaka S., Kwon J.S., Frumin M., Snyderman D., Yurgelun-Todd D., Kikinis R., Jolesz F.A., Shenton M.E.

Jul-2000

SPL, NAC, NCIGT, PNL, SLICER

Arch Gen Psychiatry. 2000 Jul;57(7):692-9.

Image-guided Therapy and Intraoperative MRI in Neurosurgery

Nabavi A., Mamisch C.T., Gering D.T., Kacher D.F., Pergolizzi R.S., Wells III W.M., Kikinis R., Black P.M., Jolesz F.A.

Jan-2000

NAC, NCIGT, SLICER, SPL

Minim Invasive Ther Allied Technol. 2000;9(3-4):277-86.

Interventional and Intraoperative Magnetic Resonance Imaging

Kettenbach J., Kacher D.F., Koskinen S.K., Silverman S.G., Nabavi A., Gering D., Tempany C.M., Schwartz R.B., Kikinis R., Black P.M., Jolesz F.A.

Jan-2000

SPL, NCIGT, Prostate Group, SLICER

Annu Rev Biomed Eng. 2000;2:661-90.

Title

Authors

1999

Collection

Reference

An Integrated Visualization System for Surgical Planning and Guidance using Image Fusion and Interventional Imaging

Gering D.T., Nabavi A., Kikinis R., Grimson W.E.L., Hata N., Everett P., Jolesz F.A., Wells III W.M.

Sep-1999

SPL, NAC, NCIGT, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 1999;2:809-819.

Title

Authors

1998

Collection

Reference

Lower Left Temporal Lobe MRI Volumes in Patients with First-episode Schizophrenia Compared with Psychotic Patients with First-episode Affective Disorder and Normal Subjects

Hirayasu Y., Shenton M.E., Salisbury D.F., Dickey C.C., Fischer I.A., Mazzoni P., Kisler T., Arakaki H., Kwon J.S., Anderson J.E., Yurgelun-Todd D., Tohen M., McCarley R.W.

Oct-1998

SPL, PNL, SLICER

Am J Psychiatry. 1998 Oct;155(10):1384-91.

Related Keywords (672)

National Alliance for Medical Image Computing

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