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Title

Authors

2012

Collection

Reference

Mapping Connectivity Damage in the Case of Phineas Gage [New]

Van Horn J., Irimia A., Torgerson C.M., Chambers M.C., Kikinis R., Toga A.W.

May-2012

NA-MIC, SPL

PLoS ONE 7(5): e37454.

Circular Representation of Human Cortical Networks for Subject and Population-level Connectomic Visualization

Irimia A., Chambers M.C., Torgerson C.M., Horn J.D.V.

Apr-2012

NA-MIC

Neuroimage. 2012 Apr 2;60(2):1340-51.

Anterior Limb of the Internal Capsule in Schizophrenia: a Diffusion Tensor Tractography Study

Rosenberger G., Nestor P.G., Oh J.S., Levitt J.J., Kindleman G., Bouix S., Fitzsimmons J., Niznikiewicz M., Westin C-F., Kikinis R., McCarley R.W., Shenton M.E., Kubicki M.

Mar-2012

PNL, LMI, NA-MIC, NAC, NCIGT, SLICER, SPL

Brain Imaging Behav. 2012 Mar 14.

MR-guided Prostate Biopsy pre- and intra-procedural MRI Registration Evaluation Dataset

Fedorov A., Tuncali K., Fennessy F., Tempany C.

Mar-2012

Prostate Group, NA-MIC, NAC, NCIGT, SLICER, SPL

MRI Registration Evaluation Dataset 2012 March

Analytic Regularization for Landmark-based Image Registration

Shusharina N., Sharp G.

Mar-2012

NA-MIC

Phys Med Biol. 2012 Mar 21;57(6):1477-98.

Prenatal Isolated Mild Ventriculomegaly is Associated with Persistent Ventricle Enlargement at Ages 1 and 2

Lyall A.E., Woolson S., Wolfe H.M., Goldman B.D., Reznick J.S., Hamer R.M., Lin W., Styner M., Gerig G., Gilmore J.H.

Mar-2012

NA-MIC

Early Hum Dev. 2012 Mar 21.

Quantitative Tract-Based White Matter Development from Birth to Age Two Years

Geng X., Gouttard S., Sharma A., Gu H., Styner M., Lind W., Gerig G., Gilmore J.H.

Mar-2012

NA-MIC

Neuroimage. 2012 March 28.

The National Alliance for Medical Image Computing, a Roadmap Initiative to Build a Free and Open Source Software Infrastructure for Translational Research in Medical Image Analysis

Kapur T., Pieper S., Whitaker R., Aylward S., Jakab M., Schroeder W., Kikinis R.

Feb-2012

SPL, NA-MIC, NAC, NCIGT

J Am Med Inform Assoc 2012;19:176-180.

Joint Modeling of Anatomical and Functional Connectivity for Population Studies

Venkataraman A., Rathi Y., Kubicki M., Westin C-F., Golland P.

Feb-2012

NAC, LMI, NA-MIC, PNL, SPL

IEEE Trans Med Imaging. 2012 Feb;31(2):164-82.

A Patient-specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury

Wang B., Prastawa M., Irimia A., Chambers M.C., Vespa P.M., Van Horn J.D., Gerig G.

Feb-2012

NA-MIC

Proceedings of SPIE 2012;8314, 831402.

Differences in White Matter Fiber Tract Development Present From 6 to 24 Months in Infants With Autism

Wolff J.J., Gu H., Gerig G., Elison J.T., Styner M., Gouttard S., Botteron K.N., Dager S.R., Dawson G., Estes A.M., Evans A.C., Hazlett H.C., Kostopoulos P., McKinstry R.C., Paterson S.J., Schultz R.T., Zwaigenbaum L., Piven J.

Feb-2012

NA-MIC

Am J Psychiatry. 2012 Feb 17.

Source Cancellation Profiles of Electroencephalography and Magnetoencephalography

Irimia A., Van Horn J.D., Halgren E.

Feb-2012

NA-MIC

Neuroimage. 2012 Feb 1;59(3):2464-74.

A Framework for Longitudinal Data Analysis via Shape Regression

Fishbaugh J., Durrleman S., Piven J., Gerig G.

Feb-2012

NA-MIC

Proceedings of SPIE 2012;8314, 83143K

Patient-tailored Connectomics Visualization for the Assessment of White Matter Atrophy in Traumatic Brain Injury

Irimia A., Chambers M.C., Torgerson C.M., Filippou M., Hovda D.A., Alger J.R., Gerig G., Toga A.W., Vespa P.M., Kikinis R., Van Horn J.D.

Feb-2012

NA-MIC, SLICER, SPL

Front. Neur. 3:10. doi: 10.3389/fneur.2012.00010

Measures for Validation of DTI Tractography

Gouttard S., Goodlett C.B., Kubicki M., Gerig G.

Feb-2012

NA-MIC

Proceedings of SPIE 2012;8314, 83140J

Multiscale 3D shape Representation and Segmentation with Applications to Hippocampal/Caudate Extraction from Brain MRI

Gao Y., Corn B., Schifter D., Tannenbaum A.

Feb-2012

NAC, NA-MIC

Med Image Anal. 2012 Feb;16(2):374-85.

Self-Crossing Detection and Location for Parametric Active Contours

Nakhmani A., Tannenbaum A.

Feb-2012

NAC, NA-MIC

IEEE Trans Image Process. 2012 Feb 23.

Asymmetric Bias in User Guided Segmentations of Brain Structures

Maltbie E., Bhatt K., Paniagua B., Smith R.G., Graves M.M., Mosconi M.W., Peterson S., White S., Blocher J., El-Sayed M., Hazlett H.C., Styner M.A.

Jan-2012

NA-MIC

Neuroimage. 2012 Jan 16;59(2):1315-23.

How to Measure Cortical Folding from MR Images: a Step-by-step Tutorial to Compute Local Gyrification Index

Schaer M., Cuadra M.B., Schmansky N., Fischl B., Thiran J-P., Eliez S.

Jan-2012

NA-MIC

J Vis Exp. 2012 Jan 2;(59):e3417.

Heritability of Brain Ventricle Volume: Converging Evidence from Inconsistent Results

Kremen W.S., Panizzon M.S., Neale M.C., Fennema-Notestine C., Prom-Wormley E., Eyler L.T., Stevens A., Franz C.E., Lyons M.J., Grant M.D., Jak A.J., Jernigan T.L., Xian H., Fischl B., Thermenos H.W., Seidman L.J., Tsuang M.T., Dale A.M.

Jan-2012

NA-MIC

Neurobiol Aging. 2012 Jan;33(1):1-8.

XCEDE: An Extensible Schema for Biomedical Data

Gadde S., Aucoin N., Grethe J.S., Keator D.B., Marcus D.S., Pieper S.

Jan-2012

SPL, NA-MIC, NAC, NCIGT

Neuroinformatics. 2012 Jan;10(1):19-32.

Voineskos A.N., Rajji T.K., Lobaugh N.J., Miranda D., Shenton M.E., Kennedy J.L., Pollock B.G., Mulsant B.H.

Jan-2012

NA-MIC, PNL, SLICER

Neurobiol Aging. 2012 Jan;33(1):21-34.

Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Subject-Specific Atlas Estimation

Prastawa M., Awate S.P., Gerig G.

Jan-2012

NA-MIC

IEEE Workshop on Mathematical Methods in Biomedical Image Analysis 2012; p. 49-56.

Search for Patterns of Functional Specificity in the Brain: A Nonparametric Hierarchical Bayesian Model for Group fMRI Data

Lashkari D., Sridharan R., Vul E., Hsieh P-J., Kanwisher N., Golland P.

Jan-2012

NA-MIC

Neuroimage. 2012 Jan 16;59(2):1348-68.

Title

Authors

2011

Collection

Reference

Atlas-Guided Segmentation of Vervet Monkey Brain MRI

Fedorov A., Li X., Pohl K.M., Bouix S., Styner M., Addicott M., Wyatt C., Daunais J.B., Wells III W.M., Kikinis R.

Dec-2011

NAC, NA-MIC, SLICER, SPL

Open Neuroimag J. 2011; 5:186–197.

Interactive MRI Segmentation with Controlled Active Vision

Karasev P., Kolesov I., Chudy K., Tannenbaum A., Muller G., Xerogeanes J.

Dec-2011

NA-MIC

IEEE Conference on Decision and Control Dec. 2011;

Morphometric Analysis of Subcortical Structures in Progressive Supranuclear Palsy: In vivo Evidence of Neostriatal and Mesencephalic Atrophy

Looi J.C.L., Macfarlane M.D., Walterfang M., Styner M., Velakoulis D., Lätt J., van Westen D., Nilsson C.

Nov-2011

NA-MIC

Psychiatry Res. 2011 Nov 30;194(2):163-75.

Comparison of Acute and Chronic Traumatic Brain Injury using Semi-automatic Multimodal Segmentation of MR Volumes

Irimia A., Chambers M.C., Alger J.R., Filippou M., Prastawa M.W., Wang B., Hovda D., Gerig G., Toga A.W., Kikinis R., Vespa P.M., Van Horn J.D.

Nov-2011

NA-MIC, SLICER, SPL

J Neurotrauma. 2011 Nov;28(11):2287-306.

The Effect of Reference Panels and Software Tools on Genotype Imputation

Nho K., Shen L., Kim S., Swaminathan S., Risacher S.L., Saykin A.J.

Oct-2011

NA-MIC

Proceedings of AMIA Annu Symp 2011;1013-1018.

Regional Gray Matter Correlates of Perceived Emotional Intelligence

Koven N.S., Roth R.M., Garlinghouse M.A., Flashman L.A., Saykin A.J.

Oct-2011

NA-MIC

Soc Cogn Affect Neurosci. 2011 Oct;6(5):582-90.

Object Tracking and Target Reacquisition Based on 3-D Range Data for Moving Vehicles

Lee J., Lankton S., Tannenbaum A.

Oct-2011

NAC, NA-MIC

IEEE Trans Image Process. 2011 Oct;20(10):2912-24.

Fiber Geometry in the Corpus Callosum in Schizophrenia: Evidence for Transcallosal Misconnection

Whitford T.J., Savadjiev P., Kubicki M., O'Donnell L.J., Terry D.P., Bouix S., Westin C-F., Schneiderman J.S., Bobrow L., Rausch A.C., Niznikiewicz M., Nestor P.G., Pantelis C., Wood S.J., McCarley R.W., Shenton M.E.

Oct-2011

PNL, LMI, NA-MIC, NAC, SPL

Schizophr Res. 2011 Oct;132(1):69-74.

Sliding Geometries in Deformable Image Registration

Pace D.F., Niethammer M., Aylward S.R.

Sep-2011

NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(WS):141-148. Workshop on Abdominal Imaging

Towards Efficient Label Fusion by Pre-Alignment of Training Data

Depa M., Holmvang G., Schmidt E.J., Golland P., Sabuncu M.R.

Sep-2011

NAC, NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(WS):38-46. Workshop on Multi-Atlas Labeling and Statistical Fusion.

Geometric Correspondence for Ensembles of Nonregular Shapes

Datar M., Gur Y., Paniagua B., Styner M., Whitaker R.

Sep-2011

NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):368-75.

Brain Structure Correlates of Individual Differences in the Acquisition and Inhibition of Conditioned Fear

Hartley C.A., Fischl B., Phelps E.A.

Sep-2011

NA-MIC

Cereb Cortex. 2011 Sep;21(9):1954-62.

Iterative Refinement of Point Correspondences for 3D Statistical Shape Models

Seshamani S., Chintalapani G., Taylor R.

Sep-2011

NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):417-25.

Fast Shape-based Nearest-neighbor Search for Brain MRIs using Hierarchical Feature Matching

Zhu P., Awate S.P., Gerber S., Whitaker R.

Sep-2011

NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):484-91.

Segmentation of Nerve Bundles and Ganglia in Spine MRI Using Particle Filters

Dalca A., Danagoulian G., Kikinis R., Schmidt E., Golland P.

Sep-2011

NA-MIC, SPL

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 3):537-45.

OpenIGTLink Protocol Version 2

Tokuda J., Hata N.

Sep-2011

SNR, NA-MIC, NAC, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2011;14(WS). Workshop on Systems & Architecture for Computer Assisted Intervention

Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data

Fishbaugh J., Durrleman S., Gerig G.

Sep-2011

NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):401-8.

Outcome Quantification using SPHARM-PDM Toolbox in Orthognathic Surgery

Paniagua B., Cevidanes L., Zhu H., Styner M.

Sep-2011

NA-MIC

Int J Comput Assist Radiol Surg. 2011 Sep;6(5):617-26.

Geometric Metamorphosis

Niethammer M., Hart G.L., Pace D.F., Vespa P.M., Irimia A., Van Horn J.D., Aylward S.R.

Sep-2011

NA-MIC

Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):639-46.

Ranking of Stopping Criteria for Log Domain Diffeomorphic Demons Application in Clinical Radiation Therapy

Peroni M., Golland P., Sharp G.C., Baroni G.

Aug-2011

NA-MIC

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:4884-7.

Mapping Human Cortical Areas in vivo Based on Myelin Content as Revealed by T1- and T2-weighted MRI

Glasser M.F., Van Essen D.C.

Aug-2011

NAC, NA-MIC

J Neurosci. 2011 Aug 10;31(32):11597-616.

Diffusion Tensor Imaging of Anterior Commissural Fibers in Patients with Schizophrenia

Choi H., Kubicki M., Whitford T.J., Alvarado J.L., Terry D.P., Niznikiewicz M., McCarley R.W., Kwon J.S., Shenton M.E.

Aug-2011

PNL, NA-MIC

Schizophr Res. 2011 Aug;130(1-3):78-85.

3D Slicer as a Tool for Interactive Brain Tumor Segmentation

Kikinis R., Pieper S.

Aug-2011

SPL, NA-MIC, NAC, SLICER

Conf Proc IEEE Eng Med Biol Soc. 2011 Aug;2011:6982-4.

Voxel-based Morphometry (VBM) Studies in Schizophrenia-Can White Matter Changes Be Reliably Detected with VBM?

Melonakos E.D., Shenton M.E., Rathi Y., Terry D.P., Bouix S., Kubicki M.

Aug-2011

PNL, NA-MIC

Psychiatry Res. 2011 Aug 30;193(2):65-70.

Optimal Data-driven Sparse Parameterization of Diffeomorphisms for Population Analysis

Durrleman S., Prastawa M., Gerig G., Joshi S.

Jul-2011

NA-MIC

Inf Process Med Imaging. 2011;22:123-34.

Adaptive Riemannian Metrics for Improved Geodesic Tracking of White Matter

Hao X., Whitaker R.T., Fletcher P.T.

Jul-2011

NA-MIC

Inf Process Med Imaging. 2011;22:13-24.

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