Difference between revisions of "Projects:ARRA:SlicerWF:PETCTWorkflow"

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*[[Projects:ARRA:SlicerWF:PETCTWorkflowDesign| PETCT Workflow Design Page]]
 
*[[Projects:ARRA:SlicerWF:PETCTWorkflowDesign| PETCT Workflow Design Page]]
  
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* 2011-03 Change Requests:<br>
 +
1) Segment and compute tumor volume for contrast-enhanced MRI scans. [Will provide with instructions for threshold based segmentation and include MRML Scene load to GUI]
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* 2011-02 Change Requests:<br>
 
* 2011-02 Change Requests:<br>
1) Add MRI (T1 , FLAIR) for aiding the VOI drawing <br>
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1) Add MRI (T1 , FLAIR) for aiding the VOI drawing <br> [done] <br>
2) Add labels for additional VOIs <br>
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2) Add labels for additional VOIs <br> [done] <br>
3) Compute SUVs for entire brain (will run on a separate label map devoted for ICC) <br>
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3) Compute SUVs for entire brain (will run on a separate label map devoted for ICC) <br> [pending] <br>
4) Segment MRI and compute brain parenchymal fraction <br>
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4) Segment MRI and compute brain parenchymal fraction <br> [in progress - separate EM Segmentation Workflow Module will be provided] <br>
 
5) Based on segmentation results in 4), compute SUVs for CSF and All White matter) <br>
 
5) Based on segmentation results in 4), compute SUVs for CSF and All White matter) <br>
6) Add total counts for a given VOI  <br>
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6) Add total counts for a given VOI  <br> [pending] <br>
 +
7) Generate denormalized Excel files out of unpivoted SUV outputs. User wants all labels <br>    to be listed as table headers. Make separate files for SUV Max, SUV Avg, SUV Total Counts <br>
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[Done for SUV Max and SUV Avg] <br>

Latest revision as of 21:11, 17 March 2011

Home < Projects:ARRA:SlicerWF:PETCTWorkflow
  • 2011-03 Change Requests:

1) Segment and compute tumor volume for contrast-enhanced MRI scans. [Will provide with instructions for threshold based segmentation and include MRML Scene load to GUI]


  • 2011-02 Change Requests:

1) Add MRI (T1 , FLAIR) for aiding the VOI drawing
[done]
2) Add labels for additional VOIs
[done]
3) Compute SUVs for entire brain (will run on a separate label map devoted for ICC)
[pending]
4) Segment MRI and compute brain parenchymal fraction
[in progress - separate EM Segmentation Workflow Module will be provided]
5) Based on segmentation results in 4), compute SUVs for CSF and All White matter)
6) Add total counts for a given VOI
[pending]
7) Generate denormalized Excel files out of unpivoted SUV outputs. User wants all labels
to be listed as table headers. Make separate files for SUV Max, SUV Avg, SUV Total Counts
[Done for SUV Max and SUV Avg]