Difference between revisions of "Events:TutorialContestJanuary2016"
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[[2016_Winter_Project_Week#Agenda|Back to Winter project week Agenda]] | [[2016_Winter_Project_Week#Agenda|Back to Winter project week Agenda]] | ||
| + | ==Introduction== | ||
| + | [http://www.slicer.org Slicer4.5] is used to perform meaningful research tasks. As part of the 3D Slicer Training activities we are building a curated portfolio of tutorials for the basic functions and specialized functionality available in Slicer. | ||
| − | + | The primary purpose of the Winter 2016 tutorial contest is to enrich the training materials that are available to end-users and developers using 3D Slicer. The contest provides members of the medical image computing and radiology research community a methodology and a framework for developing step-by-step tutorials on advanced image analysis methods. We believe participants will be motivated to join this event to enhance the dissemination of their own algorithms that they have incorporated into the Slicer4 platform and/or to enhance training of Slicer4 functionality for their own laboratory groups. | |
| − | + | ==Organizer== | |
| + | Sonia Pujol, Ph.D., Director of Training, Brigham and Women's Hospital, Harvard Medical School | ||
| − | + | ==Categories== | |
*Category 0: '''EXTENSION TUTORIAL''' <br> In this category, the tutorial will teach a user how to use an Extension of Slicer. | *Category 0: '''EXTENSION TUTORIAL''' <br> In this category, the tutorial will teach a user how to use an Extension of Slicer. | ||
*Category 1: '''END TO END SOLUTION TUTORIAL''' <br> In this category, the tutorial will teach a user how to solve a particular clinical problem using the NA-MIC Kit. <br> Example: [http://www.slicer.org/slicerWiki/images/6/65/WhiteMatterExplorationTutorial_SoniaPujol_Slicer4.5.pdf Neurosurgical Planning Tutorial] | *Category 1: '''END TO END SOLUTION TUTORIAL''' <br> In this category, the tutorial will teach a user how to solve a particular clinical problem using the NA-MIC Kit. <br> Example: [http://www.slicer.org/slicerWiki/images/6/65/WhiteMatterExplorationTutorial_SoniaPujol_Slicer4.5.pdf Neurosurgical Planning Tutorial] | ||
*Category 2: '''ALGORITHM TUTORIAL:''' In this category the tutorial will teach a user how to make an algorithm work on their data.<br> Examples: [http://www.slicer.org/slicerWiki/images/3/33/QuantitativeImaging_Slicer4.5.pdf Quantitative Imaging tutorial]<br> | *Category 2: '''ALGORITHM TUTORIAL:''' In this category the tutorial will teach a user how to make an algorithm work on their data.<br> Examples: [http://www.slicer.org/slicerWiki/images/3/33/QuantitativeImaging_Slicer4.5.pdf Quantitative Imaging tutorial]<br> | ||
*Category 3: '''METHODOLOGY TUTORIAL'''. Application-level tutorials for users and developers.<br> | *Category 3: '''METHODOLOGY TUTORIAL'''. Application-level tutorials for users and developers.<br> | ||
| − | + | *Category 4: '''TUTORIAL UPGRADE/UPDATE"'. This category allows teams who participated in the past tutorial contest editions to submit an update/upgrade of their previous submission. | |
Entries in each category require the following material: | Entries in each category require the following material: | ||
| Line 18: | Line 21: | ||
=Rules= | =Rules= | ||
| − | |||
The evaluation criteria for the 2016 tutorial contest are below: | The evaluation criteria for the 2016 tutorial contest are below: | ||
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below: | *Tutorial must be based on the Slicer 4.5 nightly build available at the link below: | ||
| Line 25: | Line 27: | ||
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)] | **[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)] | ||
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''. | *To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''. | ||
| − | *Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [ | + | *Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [https://www.slicer.org/wiki/Slicer:license Slicer license] |
*Tutorial data must be anonymized | *Tutorial data must be anonymized | ||
*Tutorial must include contact information of the primary author (e-mail and phone number) | *Tutorial must include contact information of the primary author (e-mail and phone number) | ||
| Line 32: | Line 34: | ||
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing. | +Applicants will work with the NAC Training Core in advance to do the multi-platform testing. | ||
| − | =Submission | + | =Submission Process= |
| − | |||
'''<span style="background-color: pink"> Submission dead-line: Monday December 28, 2015'''</span> | '''<span style="background-color: pink"> Submission dead-line: Monday December 28, 2015'''</span> | ||
| − | * | + | * To enter the contest, please follow the 5 steps below: |
**1. Create a wiki page for your tutorial on the NA-MIC wiki. | **1. Create a wiki page for your tutorial on the NA-MIC wiki. | ||
**2. Upload your slides and tutorial dataset. Your tutorial and data must be named as 'TutorialName_TutorialContestWinter2016.pdf' and 'TutorialData_TutorialContestWinter2016.zip' | **2. Upload your slides and tutorial dataset. Your tutorial and data must be named as 'TutorialName_TutorialContestWinter2016.pdf' and 'TutorialData_TutorialContestWinter2016.zip' | ||
| Line 42: | Line 43: | ||
**5. Once you have completed step 1-4, add a link to your tutorial page in the list below and send a notification email to Sonia Pujol (spujol at bwh.harvard.edu) to receive a confirmation of your submission. | **5. Once you have completed step 1-4, add a link to your tutorial page in the list below and send a notification email to Sonia Pujol (spujol at bwh.harvard.edu) to receive a confirmation of your submission. | ||
| − | + | =Tutorials= | |
| + | # [[Plastimatch_TutorialContestWinter2016|Plastimatch Tutorial Update Winter 2016]] | ||
| + | # [[FiberBundleSelectionAndScalarMeasurement_TutorialContestWinter2016|FiberBundleSelectionAndScalarMeasurement Winter 2016]] | ||
| + | # [[UKF-Tractography_TutorialContestWinter2016|UKF-Tractography Winter 2016]] | ||
| + | # [[SubjectHierarchyTutorial2016Winter|Subject Hierarchy Tutorial]], Csaba Pinter | ||
| + | |||
| + | = Review Session= | ||
| + | The review session of the 2016 Tutorial Contest will take place on Thursday January 7 at the Massachusetts Institute of Technology, Cambrigde, MA as part of the Winter 2016 Slicer Project Week. | ||
| + | All contestants will be invited to present brief highlights of their tutorials. Each presentation should be 8-minute summary of the submission. | ||
| + | |||
| + | Judges: | ||
| + | *Parshin Unadkat, Brigham and Women's Hospital, Harvard Medical School | ||
| + | *Utsav Soni, Brigham and Women's Hospital, Harvard Medical School | ||
| + | *Ye Cheng, Brigham and Women's Hospital, Harvard Medical School | ||
| + | *Valentin Demeusy, Brigham and Women's Hospital, Harvard Medical School | ||
| + | |||
| + | =Results= | ||
| + | The winner of the 2016 tutorial contest will be announced on Friday January 8 during the closing session of the Slicer Project Week. | ||
| + | [http://www.na-mic.org/Wiki/index.php/Winter2016TutorialContest 2016 Tutorial Contest Winner] | ||
Latest revision as of 17:40, 10 July 2017
Home < Events:TutorialContestJanuary2016Back to Winter project week Agenda
Contents
Introduction
Slicer4.5 is used to perform meaningful research tasks. As part of the 3D Slicer Training activities we are building a curated portfolio of tutorials for the basic functions and specialized functionality available in Slicer.
The primary purpose of the Winter 2016 tutorial contest is to enrich the training materials that are available to end-users and developers using 3D Slicer. The contest provides members of the medical image computing and radiology research community a methodology and a framework for developing step-by-step tutorials on advanced image analysis methods. We believe participants will be motivated to join this event to enhance the dissemination of their own algorithms that they have incorporated into the Slicer4 platform and/or to enhance training of Slicer4 functionality for their own laboratory groups.
Organizer
Sonia Pujol, Ph.D., Director of Training, Brigham and Women's Hospital, Harvard Medical School
Categories
- Category 0: EXTENSION TUTORIAL
In this category, the tutorial will teach a user how to use an Extension of Slicer. - Category 1: END TO END SOLUTION TUTORIAL
In this category, the tutorial will teach a user how to solve a particular clinical problem using the NA-MIC Kit.
Example: Neurosurgical Planning Tutorial - Category 2: ALGORITHM TUTORIAL: In this category the tutorial will teach a user how to make an algorithm work on their data.
Examples: Quantitative Imaging tutorial - Category 3: METHODOLOGY TUTORIAL. Application-level tutorials for users and developers.
- Category 4: TUTORIAL UPGRADE/UPDATE"'. This category allows teams who participated in the past tutorial contest editions to submit an update/upgrade of their previous submission.
Entries in each category require the following material:
- scientific background and application motivation
- step-by-step instructions
- anonymized sample dataset
Rules
The evaluation criteria for the 2016 tutorial contest are below:
- Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
- To enter the contest, you must provide a self-test that can be run in Slicer and a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+.
- Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the Slicer license
- Tutorial data must be anonymized
- Tutorial must include contact information of the primary author (e-mail and phone number)
- Tutorial must follow the guidelines specified above and use the Winter 2016 contest tutorial template.
- If applicable, the tutorial must provide clear directions for downloading and installing additional modules
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.
Submission Process
Submission dead-line: Monday December 28, 2015
- To enter the contest, please follow the 5 steps below:
- 1. Create a wiki page for your tutorial on the NA-MIC wiki.
- 2. Upload your slides and tutorial dataset. Your tutorial and data must be named as 'TutorialName_TutorialContestWinter2016.pdf' and 'TutorialData_TutorialContestWinter2016.zip'
- 3. Add a link to the uploaded tutorial and datasets on your tutorial page.
- 4. Copy the template of the Winter 2016 test table on your tutorial page, and enter the results of your cross-platform testing (Mac, Windows, Linux).
- 5. Once you have completed step 1-4, add a link to your tutorial page in the list below and send a notification email to Sonia Pujol (spujol at bwh.harvard.edu) to receive a confirmation of your submission.
Tutorials
- Plastimatch Tutorial Update Winter 2016
- FiberBundleSelectionAndScalarMeasurement Winter 2016
- UKF-Tractography Winter 2016
- Subject Hierarchy Tutorial, Csaba Pinter
Review Session
The review session of the 2016 Tutorial Contest will take place on Thursday January 7 at the Massachusetts Institute of Technology, Cambrigde, MA as part of the Winter 2016 Slicer Project Week. All contestants will be invited to present brief highlights of their tutorials. Each presentation should be 8-minute summary of the submission.
Judges:
- Parshin Unadkat, Brigham and Women's Hospital, Harvard Medical School
- Utsav Soni, Brigham and Women's Hospital, Harvard Medical School
- Ye Cheng, Brigham and Women's Hospital, Harvard Medical School
- Valentin Demeusy, Brigham and Women's Hospital, Harvard Medical School
Results
The winner of the 2016 tutorial contest will be announced on Friday January 8 during the closing session of the Slicer Project Week. 2016 Tutorial Contest Winner
