Difference between revisions of "TWMU BrainLab OpenIGTLink PJ"
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=Team= | =Team= | ||
==TWMU== | ==TWMU== | ||
− | Yoshiyuki Konishi | + | Yoshiyuki Konishi, PhD, |
− | Takashi Suzuki, PhD | + | [[user:takashisuzuki | Takashi Suzuki, PhD]], |
+ | Brainlab CURVE | ||
==BWH== | ==BWH== | ||
Line 15: | Line 16: | ||
==Legal/Administration== | ==Legal/Administration== | ||
− | #Contact Medtorinics representative regarding research contract to obitan and validate the Stealth Station 2 | + | #[Cancelled]Contact Medtorinics representative regarding research contract to obitan and validate the Stealth Station 2 |
− | # | + | #[Cancelled]Contact Leslie Holton ("Holton, Leslie" <leslie.holton@medtronic.com>) to see the status of Chinese and Kyusyu collaboration. Mention TWMU project. Report the outcome here. |
− | + | #[Cancelled]Contact Daisuke Inoue <dinoue@ns.med.kyushu-u.ac.jp> for updates. | |
− | # | ||
− | |||
− | |||
− | |||
##Due 2/14/2012,担当者 波多先生が大まかに電話連絡.詳細はメールで鈴木が連絡. | ##Due 2/14/2012,担当者 波多先生が大まかに電話連絡.詳細はメールで鈴木が連絡. | ||
##Mock versionのwindows版の使用の可能性確認 | ##Mock versionのwindows版の使用の可能性確認 | ||
##VVLink2が使えること | ##VVLink2が使えること | ||
##NeuroのStationの貸出 | ##NeuroのStationの貸出 | ||
− | ##アピール点:11opeの環境をBrainLAB+ | + | ##アピール点:11opeの環境をBrainLAB+Slicerで置き換える.→2013年9月中旬からBrainlabの使用がスタートします! |
− | |||
− | |||
− | |||
− | |||
− | |||
#IRB | #IRB | ||
##これまでの許可の合わせ技でクリアする?(特にソフト関係は倫理委員会では理解されない.) | ##これまでの許可の合わせ技でクリアする?(特にソフト関係は倫理委員会では理解されない.) | ||
Line 43: | Line 35: | ||
#place blob with color ( to be discussed) | #place blob with color ( to be discussed) | ||
#place blob with color a location given by Open IGT Link | #place blob with color a location given by Open IGT Link | ||
− | #Summer programming week.Transition to 3D Slicer verison 4. Learn | + | #Summer programming week.Transition to 3D Slicer verison 4. Learn how to use graph function |
− | coming topics | + | ==Resource Management== |
+ | #梅津研 | ||
+ | ##シグナス班の人材をハントする.ハーバード大学への留学の可能性アリ! | ||
+ | #佐久間研へのアプローチ | ||
+ | ##小池くんの現状を確認する作業 | ||
+ | ##清水くんの吸引管+ファイバのデバイスがどうなっているのか. | ||
+ | |||
+ | ==dead line== | ||
+ | #次回は3月15日の週にレビューをする | ||
+ | |||
+ | ==meeting history== | ||
+ | #2012/05/29 discussion with Mr.Etoh from BrainLab | ||
+ | #2012/06/18 discussion with Mr.Etoh from BrainLab | ||
+ | |||
+ | ==coming topics== | ||
#develop a software in 5ALA to understand how to modulate output. | #develop a software in 5ALA to understand how to modulate output. | ||
#develop mock software to send 5ALA output | #develop mock software to send 5ALA output | ||
− | == | + | =Achievements= |
− | # | + | *ResearchLink connection is established in TWMU! ([[User:Takashisuzuki|Takashisuzuki]] 02:32, 13 February 2014 (UTC)) |
+ | *Connection procedures are (similar to http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/OpenIGTLinkRemote/BrainlabTutorial ) | ||
+ | #Preparation | ||
+ | ##Install Slicer 4.3 and SlicerIGT module from Extension Manager. | ||
+ | ##Ask Brainlab technical staff to open port 22222, that is necessary for OpenIGTLink communication. From our experience, this port is initially closed. | ||
+ | #Connection | ||
+ | ##Select '''OpenIGTLinkIF''' module and click '''+''' button in '''Connector''' tab. | ||
+ | ##Select '''IGTLConnector''' under '''Scene'''. At this stage, Type ?, Status OFF, Hostname -, Port 18944. | ||
+ | ##In '''Properties''' area, '''IGTLConnector''' is shown in '''Name'''. Check '''Client''' radio button and input IP address and port number (22222) in '''Hostname''' and '''Port'''. | ||
+ | ##Click Active, then message window appears on the Brainlab console. | ||
+ | ##Select '''OpenIGTLink Remote''' module, and Select '''IGTLConnector''' from '''Connector''' list in '''Data Query''' Area. | ||
+ | ##Click '''Start''' Button, then OpenIGTLink (ResearchLink in Brainlab system) connection is established. | ||
+ | ##In '''OpenIGTLinkIF''' module, you can see a new item in '''I/O Configuration''' area. Scene -> IGTLConnector -> IN. MRML Type xxx, IGTL Type xxx. (Details will be added on 20140214.) Pointer model (green stick with a sphere at the end) does not appear if you change '''Vis''' to open eye. You can see the data transfer status from '''Transform''' module. |
Latest revision as of 02:57, 13 February 2014
Home < TWMU BrainLab OpenIGTLink PJContents
Goal
the goal of this project is to test and validate the mapping of 5-ALA response in neurosurgery on the intra-operative MRI. This project is join project between Tokyo Women's Medical University and Brigham and Women's Hospital. A part of challenge is to develop proxy software to convert BrainLAB and Open IGT Link. Cavity-Tract Project, Project Valentine!
Team
TWMU
Yoshiyuki Konishi, PhD, Takashi Suzuki, PhD, Brainlab CURVE
BWH
Nobuhiko Hata, PhD Junichi Tokuda, PhD
Tasks (milestones)
Legal/Administration
- [Cancelled]Contact Medtorinics representative regarding research contract to obitan and validate the Stealth Station 2
- [Cancelled]Contact Leslie Holton ("Holton, Leslie" <leslie.holton@medtronic.com>) to see the status of Chinese and Kyusyu collaboration. Mention TWMU project. Report the outcome here.
- [Cancelled]Contact Daisuke Inoue <dinoue@ns.med.kyushu-u.ac.jp> for updates.
- Due 2/14/2012,担当者 波多先生が大まかに電話連絡.詳細はメールで鈴木が連絡.
- Mock versionのwindows版の使用の可能性確認
- VVLink2が使えること
- NeuroのStationの貸出
- アピール点:11opeの環境をBrainLAB+Slicerで置き換える.→2013年9月中旬からBrainlabの使用がスタートします!
- IRB
- これまでの許可の合わせ技でクリアする?(特にソフト関係は倫理委員会では理解されない.)
- 念のために包括での申請.
- ハーバードでは「他の大学で認められている」という言い方もしている.
Technical
- Download 3D Slicer source code and compile
- トラクトグラフィをTWMUのデータで描く(新しい東芝のMRIのデータで描けるか)
- test communication with BrainLAB system via VVLink
- place blob with color ( to be discussed)
- place blob with color a location given by Open IGT Link
- Summer programming week.Transition to 3D Slicer verison 4. Learn how to use graph function
Resource Management
- 梅津研
- シグナス班の人材をハントする.ハーバード大学への留学の可能性アリ!
- 佐久間研へのアプローチ
- 小池くんの現状を確認する作業
- 清水くんの吸引管+ファイバのデバイスがどうなっているのか.
dead line
- 次回は3月15日の週にレビューをする
meeting history
- 2012/05/29 discussion with Mr.Etoh from BrainLab
- 2012/06/18 discussion with Mr.Etoh from BrainLab
coming topics
- develop a software in 5ALA to understand how to modulate output.
- develop mock software to send 5ALA output
Achievements
- ResearchLink connection is established in TWMU! (Takashisuzuki 02:32, 13 February 2014 (UTC))
- Connection procedures are (similar to http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/OpenIGTLinkRemote/BrainlabTutorial )
- Preparation
- Install Slicer 4.3 and SlicerIGT module from Extension Manager.
- Ask Brainlab technical staff to open port 22222, that is necessary for OpenIGTLink communication. From our experience, this port is initially closed.
- Connection
- Select OpenIGTLinkIF module and click + button in Connector tab.
- Select IGTLConnector under Scene. At this stage, Type ?, Status OFF, Hostname -, Port 18944.
- In Properties area, IGTLConnector is shown in Name. Check Client radio button and input IP address and port number (22222) in Hostname and Port.
- Click Active, then message window appears on the Brainlab console.
- Select OpenIGTLink Remote module, and Select IGTLConnector from Connector list in Data Query Area.
- Click Start Button, then OpenIGTLink (ResearchLink in Brainlab system) connection is established.
- In OpenIGTLinkIF module, you can see a new item in I/O Configuration area. Scene -> IGTLConnector -> IN. MRML Type xxx, IGTL Type xxx. (Details will be added on 20140214.) Pointer model (green stick with a sphere at the end) does not appear if you change Vis to open eye. You can see the data transfer status from Transform module.