Difference between revisions of "Inter-slice Motion Correction for fMRI"
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== Progress == | == Progress == | ||
− | * Implemented and tested b-Spline/affine registration with Mattes-MI and KL metrics. | + | * Implemented and tested b-Spline/affine registration with Mattes-MI and KL metrics. |
+ | * Coding completed. However, results are far from satisfactory. | ||
+ | * Progress (maybe) stymied by "poor" resolution of data. | ||
+ | * Progress (maybe) stymied by "not-so-viable" metrics (MI, etc.). | ||
== Results == | == Results == |
Revision as of 17:03, 12 September 2007
Home < Inter-slice Motion Correction for fMRIContents
Objective
* To perform inter-slice motion correction in fMR images using affine and non-rigid registration methods.
Progress
* Implemented and tested b-Spline/affine registration with Mattes-MI and KL metrics. * Coding completed. However, results are far from satisfactory. * Progress (maybe) stymied by "poor" resolution of data. * Progress (maybe) stymied by "not-so-viable" metrics (MI, etc.).
Results
Affine
- affine motion with all metrics degrades the inter-slice registration.
Non-Rigid
- B-spline deformation with KL metric produces very minimal change (in a least squares sense), while MI produces more changes but doesn't look correct.
Images
Affine motion with mean square error metric
Affine motion with Mattes MI error metric
Issues
- As can be seen any registration result looks more jagged (along the sagittal and coronal sections).
- Low sampling rate and image noise - all the metrics are extremely non-smooth as a result.
- Even the slightest change in initialization results in a large deviation in the registration result.
Open questions
* Intensity normalization / histogram equalization - would these have any impact on inter-slice registration? Would they affect the computation of the joint-entropies for MI/KL metrics. * Should there be some regularization factor on the registration to limit the motion ?
To Do
* Right now, registration is done on a slice by slice basis. However, due to the low resolution of fMRI and the absence of gradients result in low registration accuracy. We are investigating using alternative image-to-image metrics like the KL divergence. We are also looking at simultaneously registering multiple slices.
Key Investigators
* Firdaus Janoos, Raghu Machiraju, Steve Pieper, Wendy Plesniak.