Proposed work pipeline

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Home < Proposed work pipeline
  1. Ginger: produce ICC mask for chosen template: Gucci
  2. Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline
  3. Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF
  4. Ron: manually segment sub-cortical structures.
  5. Ginger: produce Slicer3 module for back propagation and manual correct the results
  6. Ginger: smooth back propagation results to generate final templates
  7. Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects
  8. Ginger: finalize by EM segmentation.


Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures.