NAMIC Wiki - User contributions [en]

2014 Summer Project Week:Slicer Tutorial Updates

2014-09-30T02:56:57Z

Aminp: /* Key Investigators */

[[image:PW-MIT2014.png|300px]]
[[File:Picture3.png|350px]]
[[File:Picture2.png|350px]]
==Key Investigators==
* Wentworth Institute of Technology: Parth Amin
* Boston College: Farukh Kohistani
* BWH/Harvard Medical School: Dr. Sonia Pujol

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing the documentation for the Slicer 4.4:
*SlicerWelcome Tutorial
*Slicer4Minute Tutorial
*Slicer4 Quantitative Imaging Tutorial
*Diffusion Tensor Imaging Tutorial
*Neruosurgical Planning Tutorial
*Data Loading and 3D Visualization training module
*3D Visualization of DICOM images for Radiology Applications

The goal is to create a step-by-step training module showing how to use the new features of Slicer 4.4.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

*Our approach for documentation of Slicer 4.4 is to provide an intuitive and up-to-date training module that will be the starting step for new users joining the Slicer community.
*The main challenge to this approach is to be relevant for the all gamut of Slicer new users, from first-year students to brain surgeons.

*Our plan for the project week is to update all the necessary tutorials to the latest version for new users to be able to accurately maneuver through 3D Slicer with the use of the tutorials.
*We will put together a Wiki page that guides the trainee toward completion of the tutorial learning outcomes.

This work experience is part of our internship under the supervision of Dr. Sonia Pujol.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!135&authkey=!AOhqGXV88qFayas&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!151&authkey=!ACOtJ4ThFnfLiFY&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!155&authkey=!AMWWJF1IxyWEOZo&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

We have successfully updated majority of the modules with the assistance from Dr. Sonia Pujol to help new users navigate there way around the Slicer software.

To Do:

Finish updating Slicer4 Quantitative Imaging tutorial and 3D Visualization of DICOM images for Radiology Applications tutorial.
Update the tutorials from time to time to keep them up-to-date with the newest Slicer version.

2014 Summer Project Week:Slicer Tutorial Updates

2014-09-30T02:55:37Z

Aminp: /* Key Investigators */

[[image:PW-MIT2014.png|300px]]
[[File:Picture3.png|350px]]
[[File:Picture2.png|350px]]
==Key Investigators==
* Wentworth Institute of Technology: Parth Amin
* Boston College: Farukh Kohistani
* BWH/Harvard Medical School: Dr. Sonia Pujol

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing the documentation for the Slicer 4.4:
*SlicerWelcome Tutorial
*Slicer4Minute Tutorial
*Slicer4 Quantitative Imaging Tutorial
*Diffusion Tensor Imaging Tutorial
*Neruosurgical Planning Tutorial
*Data Loading and 3D Visualization training module
*3D Visualization of DICOM images for Radiology Applications

The goal is to create a step-by-step training module showing how to use the new features of Slicer 4.4.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

*Our approach for documentation of Slicer 4.4 is to provide an intuitive and up-to-date training module that will be the starting step for new users joining the Slicer community.
*The main challenge to this approach is to be relevant for the all gamut of Slicer new users, from first-year students to brain surgeons.

*Our plan for the project week is to update all the necessary tutorials to the latest version for new users to be able to accurately maneuver through 3D Slicer with the use of the tutorials.
*We will put together a Wiki page that guides the trainee toward completion of the tutorial learning outcomes.

This work experience is part of our internship under the supervision of Dr. Sonia Pujol.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!155&authkey=!AMWWJF1IxyWEOZo&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

We have successfully updated majority of the modules with the assistance from Dr. Sonia Pujol to help new users navigate there way around the Slicer software.

To Do:

Finish updating Slicer4 Quantitative Imaging tutorial and 3D Visualization of DICOM images for Radiology Applications tutorial.
Update the tutorials from time to time to keep them up-to-date with the newest Slicer version.

2014 Summer Project Week:Slicer Tutorial Updates

2014-09-30T02:55:24Z

Aminp: /* Key Investigators */

[[image:PW-MIT2014.png|300px]]
[[File:Picture3.png|350px]]
[[File:Picture2.png|350px]]
==Key Investigators==
* Wentworth Institute of Technology: Parth Amin
* Boston College: Farukh Kohistani
* BWH/Harvard Medical School: Dr. Sonia Pujol

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing the documentation for the Slicer 4.4:
*SlicerWelcome Tutorial
*Slicer4Minute Tutorial
*Slicer4 Quantitative Imaging Tutorial
*Diffusion Tensor Imaging Tutorial
*Neruosurgical Planning Tutorial
*Data Loading and 3D Visualization training module
*3D Visualization of DICOM images for Radiology Applications

The goal is to create a step-by-step training module showing how to use the new features of Slicer 4.4.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

*Our approach for documentation of Slicer 4.4 is to provide an intuitive and up-to-date training module that will be the starting step for new users joining the Slicer community.
*The main challenge to this approach is to be relevant for the all gamut of Slicer new users, from first-year students to brain surgeons.

*Our plan for the project week is to update all the necessary tutorials to the latest version for new users to be able to accurately maneuver through 3D Slicer with the use of the tutorials.
*We will put together a Wiki page that guides the trainee toward completion of the tutorial learning outcomes.

This work experience is part of our internship under the supervision of Dr. Sonia Pujol.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!155&authkey=!AMWWJF1IxyWEOZo&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

We have successfully updated majority of the modules with the assistance from Dr. Sonia Pujol to help new users navigate there way around the Slicer software.

To Do:

Finish updating Slicer4 Quantitative Imaging tutorial and 3D Visualization of DICOM images for Radiology Applications tutorial.
Update the tutorials from time to time to keep them up-to-date with the newest Slicer version.

Parth Amin

2014-09-30T02:44:36Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!135&authkey=!AOhqGXV88qFayas&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!151&authkey=!ACOtJ4ThFnfLiFY&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!155&authkey=!AMWWJF1IxyWEOZo&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-30T02:41:14Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!135&authkey=!AOhqGXV88qFayas&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!151&authkey=!ACOtJ4ThFnfLiFY&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!151&authkey=!ACOtJ4ThFnfLiFY&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-29T23:43:50Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!135&authkey=!AOhqGXV88qFayas&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!151&authkey=!ACOtJ4ThFnfLiFY&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!152&authkey=!ADpqS1-jMKKFc54&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-29T15:36:43Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!135&authkey=!AOhqGXV88qFayas&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!152&authkey=!ADpqS1-jMKKFc54&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-29T13:47:53Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!152&authkey=!ADpqS1-jMKKFc54&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-29T12:52:42Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!140&authkey=!ABsHUY7CFBFdAw4&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-29T12:12:40Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!149&authkey=!AGIb8buvr-BAKhk&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung. The label maps and 3D model is shown in the screenshot to represent the current segmentation.
[[File:Picture1.png]]

Parth Amin

2014-09-29T12:11:28Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!149&authkey=!AGIb8buvr-BAKhk&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung.

[[File:Picture1.png]]

File:Picture1.png

2014-09-29T12:11:02Z

Aminp: uploaded a new version of "File:Picture1.png"

Parth Amin

2014-09-29T12:10:29Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!149&authkey=!AGIb8buvr-BAKhk&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Segmentation and 3D surface reconstruction of the lung and pulmonary vessels. From the DataStore module in Slicer, the arteries and veins from the original model of pulmonary vessels can be viewed. In the image below, it represents the most recent status of the segmentation of the lung.

[[File:Lung_Segmentation.png]]

Parth Amin

2014-09-26T16:29:12Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!149&authkey=!AGIb8buvr-BAKhk&ithint=file%2cpptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

This is the current Lung Segmentation using the software pen Bamboo stylus to accurately outline the lung segmentation. The lung model is found in the DataStore modules to view how the segments fit around the lung model.

[[File:Lung_Segmentation.png]]

Parth Amin

2014-09-24T15:45:38Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!145&authkey=!AAFm3vU4ye4aNrw&ithint=file%2c.pptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

This is the current Lung Segmentation using the software pen Bamboo stylus to accurately outline the lung segmentation. The lung model is found in the DataStore modules to view how the segments fit around the lung model.

[[File:Lung_Segmentation.png]]

Parth Amin

2014-09-24T15:42:14Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!145&authkey=!AAFm3vU4ye4aNrw&ithint=file%2c.pptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

[[File:Lung_Segmentation.png]]

File:Lung Segmentation.png

2014-09-24T15:41:58Z

Aminp: uploaded a new version of "File:Lung Segmentation.png"

Parth Amin

2014-09-24T15:40:44Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!145&authkey=!AAFm3vU4ye4aNrw&ithint=file%2c.pptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

[[File:Lung Segmentation.png]]

File:Lung Segmentation.png

2014-09-24T15:38:29Z

Aminp:

File:Picture1.png

2014-09-24T15:35:29Z

Aminp: uploaded a new version of "File:Picture1.png": Lung Segmentation

Parth Amin

2014-09-24T15:34:34Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!145&authkey=!AAFm3vU4ye4aNrw&ithint=file%2c.pptx 3D Visualization of DICOM images for Radiology Applications]

Lung Segmentation:

Parth Amin

2014-09-24T00:57:33Z

Aminp:

This page is intended to document the work by Parth Amin during his lab hours.

*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!145&authkey=!AAFm3vU4ye4aNrw&ithint=file%2c.pptx 3D Visualization of DICOM images for Radiology Applications]

2014 Summer Project Week:Slicer Tutorial Updates

2014-09-24T00:56:41Z

Aminp: /* Key Investigators */

[[image:PW-MIT2014.png|300px]]
[[File:Picture3.png|350px]]
[[File:Picture2.png|350px]]
==Key Investigators==
* Wentworth Institute of Technology: Parth Amin
* Boston College: Farukh Kohistani
* BWH/Harvard Medical School: Dr. Sonia Pujol

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing the documentation for the Slicer 4.4:
*SlicerWelcome Tutorial
*Slicer4Minute Tutorial
*Slicer4 Quantitative Imaging Tutorial
*Diffusion Tensor Imaging Tutorial
*Neruosurgical Planning Tutorial
*Data Loading and 3D Visualization training module
*3D Visualization of DICOM images for Radiology Applications

The goal is to create a step-by-step training module showing how to use the new features of Slicer 4.4.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

*Our approach for documentation of Slicer 4.4 is to provide an intuitive and up-to-date training module that will be the starting step for new users joining the Slicer community.
*The main challenge to this approach is to be relevant for the all gamut of Slicer new users, from first-year students to brain surgeons.

*Our plan for the project week is to update all the necessary tutorials to the latest version for new users to be able to accurately maneuver through 3D Slicer with the use of the tutorials.
*We will put together a Wiki page that guides the trainee toward completion of the tutorial learning outcomes.

This work experience is part of our internship under the supervision of Dr. Sonia Pujol.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
*Tutorials (completed)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!125&authkey=!AOqi81bwVIVhIKE&ithint=file%2c.pptx Slicer4Minute]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!122&authkey=!AERBsPF7W2r5DSw&ithint=file%2c.pptx SlicerWelcome]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!124&authkey=!AL7k0Iz-EVP-PEY&ithint=file%2c.pptx 3D Data Loading and Visualization]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!147&authkey=!AL53h08ElIxRUZQ&ithint=file%2cpptx Diffusion Tensor Imaging]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!128&authkey=!ACqG8fvm0GR5MBU&ithint=file%2c.pptx Neruosurgical Planning]
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!141&authkey=!ACIPIax54RMwvMQ&ithint=file%2cpptx Slicer4 Quantitative Imaging]
*Tutorials (in-progress)
**[https://onedrive.live.com/redir?resid=DBCB19D6C9CCFFA9!145&authkey=!AAFm3vU4ye4aNrw&ithint=file%2c.pptx 3D Visualization of DICOM images for Radiology Applications]

We have successfully updated majority of the modules with the assistance from Dr. Sonia Pujol to help new users navigate there way around the Slicer software.

To Do:

Finish updating Slicer4 Quantitative Imaging tutorial and 3D Visualization of DICOM images for Radiology Applications tutorial.
Update the tutorials from time to time to keep them up-to-date with the newest Slicer version.