Slicer3:Pipeline Integration

2008-02-04T20:42:54Z

Apayan:

LONI Pipeline website: http://pipeline.loni.ucla.edu

With the release of Pipeline v4.0 in December '07, we've developed a stable and robust framework for continuing development into the future. With regards to the Slicer 3 (currently in Beta) integration, the LONI Pipeline has a complete [http://cms.loni.ucla.edu/pipeline/default.aspx?id=2134#Running%20from%20the%20command%20line command line interface] that can be used to run workflows with dynamically bound values in addition to it's GUI interface.
<code>
Usage: pipeline [OPTIONS] PIPEFILE [paramID1=value ... paramIDN=valueN]
-execute Validates then executes the specified workflow
-validate Just validates the specified workflow then exits
-display Displays all the required/enabled parameters in the
workflow
-sync Program will not exit until workflow finishes executing
-credentials=FILE Specify an XML file containing credentials to a Pipeline
server that will be needed for execution or validation.
This is not necessary if you're username and password
are saved in your list of connections in the graphical
client. Format is the following:
<?xml version="1.0" encoding="UTF-8"?>
<connections>
<conn address="cranium.loni.ucla.edu"
user="jane"
password="secret" />
</connections>
-help Prints out LONI Pipeline help. (this text)
-version Prints out the LONI Pipeline version
</code>

Using information from the [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Execution_Model_Documentation#Executable_plugins_with_command_line_options Slicer3 execution model] we will add support for the --xml flag to the Pipeline command line so Slicer can use the Pipeline from it's GUI. This will occur after the release of the final version of Slicer3.

'''Developers'''<nowiki>: </nowiki>

* Celia Cheung
* Arash Payan
* Jia Wei Tam

NAMIC Wiki - User contributions [en]

Slicer3:Pipeline Integration