NAMIC Wiki - User contributions [en]

File:MICCAI2010 NAMIC Tutorial HAMMER ShenDG.pdf

2010-08-17T03:17:24Z

Dgshen:

MICCAI 2010 Tutorial Notes

2010-08-17T03:14:51Z

Dgshen:

'''Note to Tutorial Speakers:''' please post below the material of your presentation to be included in a USB key for the tutorial participants.

As requested by MICCAI organizers, the dead-line for submitting the materials is '''August 15,2010'''. 

NA-MIC Tutorial at MICCAI 2010: list of materials to include (slides, publications, software, data...)

* [[media:MICCAI2010_T2tutorial_NAMIC_flyer.pdf| Tutorial flyer]]

* Introduction and goals of the workshop (no materials)
* [[media:Slicer-Overview-NC-2010-08-11.ppt|Overview of the National Alliance for Medical Image Computing (NA-MIC)]] (Kikinis)
* [[media:NAMIC_Programming_Environment_MICCAI2010_SoniaPujol.pdf‎ | NA-MIC Programming Environment - SPujol]]
* [[media:NAMIC_Testing_MICCAI2010_XiaodongTao.pdf‎ | 'Hardening' your software with the NA-MIC kit, regression tests and dashboard (Aylward/Tao)]]
* [[media:BuildingBridgesBetweenSoftwarePlatforms_MICCAI2010_SoniaPujol.pdf‎ | Building bridges between complementary medical image analysis platforms (e.g. Freesurfer, BRAINS2, HAMMER) ]](Pujol)
* [[media:Slicer-Overview-NC-2010-08-11.ppt|How to participate in NA-MIC: collaboration grants, user and developer community]] (Kikinis)
* [[media:MICCAI2010_NAMIC_Tutorial_HAMMER_ShenDG.pdf | Image Registration (Dinggang Shen) ]]
* [[media:MICCAI10-Tutorial-Pohl.pdf | Image Segmentation: EM Segmenter (Pohl) ]]
* Automatic Brain Segmentation (Gerig)
* [[media:2010_09_CortThick-NAMIC-MICCAI.pdf | Cortical Thickness Measurements (Styner)]]
* Diffusion Tensor Imaging (Gerig/Pujol/Styner)
* Image-Guided Therapy (Hata)
**[http://www.slicer.org/slicerWiki/images/9/9a/SlicerNeurosurgeryTutorial-3.6.ppt Neurosurgery Slide (posted at Slicer.org)]
**[http://www.slicer.org/slicerWiki/images/d/d1/Slicer-tutorial-neurosurgery.zip Data (posted at Slicer.org)]
* [http://www.slicer.org/pages/Slicer_Community Other examples from the community] (Kikinis)
* Optional Hands-on Session: Interfacing your MICCAI algorithm with the NA-MIC open-source toolkit: the ‘Hello Python’ tutorial (Pujol)
** Windows: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-win32.exe
** Linux 64: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-linux-x86_64.tar.gz
** Linux 32: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-linux-x86.tar.gz
** Mac Darwin: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-darwin-x86.tar.gz
** [[media:HelloPython.zip‎ | HelloPythonDataset.zip]]

Back to [http://www.na-mic.org/Wiki/index.php/MICCAI_2010 MICCAI 2010 Tutorial]

File:NAMIC-Shen-2010-01-07.ppt

2010-01-06T18:02:15Z

Dgshen:

AHM 2010

2010-01-06T17:16:34Z

Dgshen:

__NOTOC__
== Introduction ==
{| border="00" cellpadding="8" cellspacing="0"
|-
| rowspan="2" align="left" | '''This is the home page for the 2010 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']].

For information about the January 2010 project week, see below or click [[2010_Winter_Project_Week|'''here''']].

For information about Utah as a travel destination click [http://www.utah.com '''here'''].
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
|-
| style="background: #ebeced"|The 2010 AHM, EAB and Project Week will be held '''January 4-8 2010''', in '''Salt Lake City''', Utah.
|}

== Agenda==

'''wireless connection: Select hotel wireless network - this gets you a non-secure line - Start your web browser, enter services.globalsuite.net in the address bar - Location is Capital Ball Room, group is Utah, passcode is Utah, both are case sensitive. If you have trouble, ask Deb or another attendee for help''' 

{| border="1" cellpadding="5"
|- style="background:#ebeced; color:black" align="left"
| style="width:4%" | '''Time'''
| style="width:12%" | '''Monday, January 4'''
| style="width:12%" | '''Tuesday, January 5'''
| style="width:12%" | '''Wednesday, January 6'''
| style="width:32%" | '''Thursday, January 7 '''
| style="width:12%" | '''Friday, January 8'''
|-
| style="background:#ffffdd; color:black"|
| style="background:#b4d597; color:#522200"| '''[[2010_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2010_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2010_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#fff6a6; color:#522200"| '''AHM''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Capitol A-B], [[2010_EAB|'''EAB''']] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]
'''[[2010_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus A]
| style="background:#b4d597; color:#522200"|'''[[2010_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
|-
| style="background:#ffffdd; color:black"|'''7:30-8:00'''
| style="background:#ebeced; color:black"|
| style="background:#b4d597; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
| style="background:#fff6a6; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
|-
| style="background:#ffffdd; color:black"|'''8:00-10:00'''
| style="background:#ebeced; color:black"|'''9:30''' Core 1 and 2 PI closed session in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A]
| style="background:#b4d597; color:black"|Project Work '''8:00-8:30''' [[AHM2010:NA-MIC Kit Update| NA-MIC Kit Update]] (Jim Miller, Steve Pieper) 
'''8:30-10:00''' [[AHM2010:QtTutorial#Qt_tutorial|Qt Tutorial]] (Julien Finet)
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2010:Tutorial Contest|Tutorial Contest]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
'''9:00-10:00''' [[AHM2010:AnnotationBreakout| Slicer Annotation Breakout (Kilian Pohl) ]] (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''8:00''' [[AHM 2010 Introduction|Introduction]], [http://www.spl.harvard.edu/~kikinis Ron Kikinis] 
'''8:05''' [[AHM 2010 NA-MIC Highlights|NA-MIC Highlights]] ([http://www.cs.utah.edu/~whitaker/ Ross Whitaker]) 
'''8:20''' [[Media:2010_NAMICAHM_StynerValidation.ppt‎ |Validation]] ([http://www.cs.unc.edu/~styner/ Martin Styner]) 
'''Roadmap Projects''' 
'''8:35''': [[AHM2010:JHU|JHU/Queens]] ([http://research.cs.queensu.ca/~gabor/ Gabor Fichtinger]) 
'''8:55''': [[AHM2010:UNC|UNC]] ([http://www.med.unc.edu/psych/directories/faculty/hazlett/ Heather Cody]) 
'''9:15''': [[AHM2010:PNL|PNL]] ([http://pnl.bwh.harvard.edu/people/profiles/kubicki.html Marek Kubicki]) 
'''9.35''': [[AHM2010:Mind|Mind Institute]] ([http://www.mrn.org/principle-investigators/h.-jeremy-bockholt.html Jeremy Bockolt]) 
| style="background:#b4d597; color:black"|Project Work 
|-
| style="background:#ffffdd; color:black"|'''10:00-10:30'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#b4d597; color:black"| '''10:00''' Project Review
|-
| style="background:#ffffdd; color:black"|'''10:30-12:00'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"|Project Work 
'''10:30-11:30'''[[2010_Winter_Project_Week_Slicer_Dashboard|Test We Must]] (Luis)
 
'''11:30-12:30'''[[AHM_2010_Tutorial_Polishing|Tutorial Polishing]] (Stuart Wallace, Sonia, Randy) 

| style="background:#b4d597; color:black"|Project Work 

'''10:30-11:30'''[[2010_Winter_Project_Week_DTI_Breakout_Session|DTI Breakout Session]] (Sonia Pujol, Lauren O'Donnell)
 

| style="background:#fff6a6; color:black"|
'''Collaborations''' 
'''10:30''': Iowa ([http://www.engineering.uiowa.edu/faculty-staff/profile-directory/bme/grosland_n.php Nicole Grosland]) 
'''10:40''': [[Media:NAMIC External-Wyatt2010.ppt|Wake Forest]] ([http://www.ece.vt.edu/faculty/wyatt.html Chris Wyatt]) 
'''10:50''': [[Media:NA-MIC_Cleary_RF_Ablation_Georgetown_Jan_2010.pdf|Georgetown]] ([http://www.isis.georgetown.edu/PORTALVBVS/DesktopDefault.aspx?tabindex=2&tabid=8 Kevin Cleary]) 
'''11:00''': [[Media:NAMIC-Shen-2010-01-07.ppt|UNC]]
([http://www.med.unc.edu/~dgshen Dinggang Shen]) 
'''11:10''': JHU ([http://iacl.ece.jhu.edu/~prince/ Jerry Prince]) 
'''11:20''': MGH (Hiroyuki Yoshida) 
'''11:30''': JHU (Michael Miller) 
'''11:40''': Utah (Janet Lainhart) 
'''11:50''': BWH (Raul San Jose) 
| style="background:#b4d597; color:black"|Project Work
|-
| style="background:#ffffdd; color:black"|'''12:00-1:00'''
| style="background:#b4d597; color:black"| Lunch
| style="background:#b4d597; color:black"| Lunch 
| style="background:#b4d597; color:black"| Lunch 
| style="background:#fff6a6; color:black"| Lunch
| style="background:#b4d597; color:black"| Adjourn
|-
| style="background:#ffffdd; color:black"|'''1:00-3:00'''
| style="background:#b4d597; color:black"|[[2010_Winter_Project_Week|Begin Project Activities]]: '''2:00''' Introduce Projects and Participants
| style="background:#b4d597; color:black"|'''1:00-2:00''' [[AHM2010:RegistrationBreakout|Registration Breakout (Dominik, Casey)]] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Amethyst Amethyst 1]
| style="background:#b4d597; color:black"|Project Work (Capital Ballroom A) '''2:00-3:00''' Grid Wizard Tutorial (Marco Ruiz)
| style="background:#fff6a6; color:black"|
'''Tools and Tutorials''' 
'''1:00-1:20''' [[AHM2010:Slicer|Slicer]] ([http://www.spl.harvard.edu/~pieper Steve Pieper]) 
'''1:20-1:40''' [[AHM2010:Plug-ins|Interfacing with Slicer]] ([http://wiki.na-mic.org/Wiki/index.php/User:Millerjv Jim Miller]) 
'''1:40-2:00''' [[AHM2010:Non-interactive-tools|Non-interactive tools]] ([http://www.kitware.com/company/team/aylward.html Stephen Aylward]) 
'''2:00-2:30''' Training Core & DTI Tractography Validation Update ([http://lmi.bwh.harvard.edu/~spujol/ Sonia Pujol]) 
'''2:30-3:00''' [[AHM2010:Tutorial-Contest-Winners|Tutorial Contest]]: Presentations by the winners ([http://www.nmr.mgh.harvard.edu/martinos/people/showPerson.php?people_id=64 Randy Gollub]) 
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-3:30'''
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-5:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2010:QtTutorial#Qt_technical_workshop|Qt Workshop]] (Julien Finet) Project Work [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''3:00-5:00''' [[AHM2010:SlicerHandson|Slicer Hands-on with Ron]] Breakout [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#fff6a6; color:black"|[[2010_EAB|EAB]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B] '''3:00-4:00''' Discussion with NA-MIC Leadership '''4:00-5:00''' Closed Session
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''05:00-07:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''05:00-06:00''' Breakout(Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''6:00''' Optional: [http://www.skisaltlake.com/murphys.htm Beer at Murphy's] (like last year)
| style="background:#ebeced; color:black"|
|}

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 4th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

== Dates Venue Registration ==
'''Dates:'''
* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 7th'''.
* Project Activities will be held rest of the week between '''Monday, January 4th and Friday, January 8th'''.

'''Venue:''' The venue for the meeting is [http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/ Marriott City Center, Salt Lake City, Utah] Marriott City Center, Salt Lake City, Utah. [http://marriott.com/property/meetingsandevents/floorplans/slccc (Floorplan)]. Please either call the hotel at +1-877-905-4491 (toll free) or book online at http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/?toDate=1/8/10&groupCode=NAMNAMA&fromDate=1/3/10&app=resvlink'''by December 14, 2009''' using the code NAMNAMA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms. Please also note that the room rate without the code is ~$200/night and we will not be able to help you get a discount if you don't book in time.

'''Registration:''' We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2010.html for online registration. This registration must be completed by December 12, 2009. 

'''Connectivity'''
We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

== Attendees ==

'''The registered attendee list will be posted here by the organizers. DO NOT add your name to this list yourself.'''
 
#Ron Kikinis, BWH
#Katie Mastrogiacomo, BWH
#Sonia Pujol, BWH
#Nicole Aucoin, BWH
#Katie Hayes, BWH
#Lauren O'Donnell, BWH
#Sandy Wells, BWH
#Andrew Rausch, PNL
#Alexander Zaitsev, BWH
#Andriy Fedorov, BWH
#Raul San Jose Estepar, BWH (AHM only)
#Wendy Plesniak, BWH
#Peter Savadjiev, BWH
#Petter Risholm, BWH
#Dominik Meier, BWH
#Junichi Tokuda, BWH
#Scott Hoge, BWH
#Ben Schwartz, BWH
#Marek Kubicki, BWH
#Sylvain Bouix, BWH
#James Malcolm, BWH
#James Ross, BWH (AHM only)
#Daniel Haehn, BWH
#Sandy Napel, EAB (AHM only)
#Bill Lorensen, EAB
#Fred Prior, EAB (AHM only)
#Chris Johnson, EAB
#Godfrey Pearlson, EAB (AHM only)
#Morry Blumenfeld, EAB (AHM only)
#Kevin Cleary, Georgetown (AHM only)
#Heather Hazlett, UNC (AHM only)
#Chris Wyatt, Virginia Tech (AHM only)
#Gabor Fichtinger, Queens (AHM only)
#Zohara Cohen, NIBIB (AHM only)
#Yi Gao, Georgia Tech
#Sylvain Jaume, MIT CSAIL
#Vandana Mohan, Georgia Tech
#Min Chen, Johns Hopkins
#Deepika Mahalingam, UNC-Chapel Hill
#SUN HYUNG KIM, UNC at Chapel Hill
#Clement Vachet, UNC Chapel Hill
#Will Schroeder, Kitware
#Casey Goodlett, Kitware
#Yang Zhang, The University of Western Australia M050
#Corentin Hamel, UNC
#Martin Styner, UNC
#Julien Finet, Kitware Inc.
#LUIS IBANEZ, KITWARE Inc.
#Stephen Aylward, Kitware, Inc.
#Garrett Larson, UNC
#Steve Pieper, Isomics, Inc.
#Daniel Marcus, Washington University
#Curtis Lisle, KnowledgeVis, LLC
#Andras Lasso, Queens University
#GOPALKRISHNA VENI, University of Utah
#Hans Johnson, University of IowaPsychiatry
#Julien Jomier, Kitware Inc.
#Adam Wittek, The University of Western Australia M050
#alexandre gouaillard, CoSMo Software
#Kilian Pohl, IBM
#German Cavelier, NIMHNIHDNBBS (AHM only)
#Jean-Christophe Fillion-Robin, Kitware Inc. (AHM only)
#Daniel Blezek
#Arnaud Gelas, Harvard Medical School
#Behnood Gholami, Georgia Tech
#Hans Johnson, University of Iowa Psychiatry
#Peter Karasev, Georgia Tech
#Ivan Kolesov, GaTech
#James Miller
#Timothy Olsen, Washington University STL
#John Paulett, Washington University
#Nicolas Rannou,Harvard Medical School
#Yundi Shi, UNC
#Lydie Souhait, Harvard Medical School
#Duygu Tosun, UCSFCIND
#Alexander Yarmarkovich, Isomics
#Linda Krigbaum, National Library of Medicine (AHM only)
#Dinggang Shen, UNC-Chapel Hill
#Jeremy Bockholt, The Mind Research Network
#Elvis Chen, Robarts Research Institute
#Michal Depa, MIT
#James Fishbaugh, SCI Institute
#Guido Gerig, SCI Institute
#Nicole Grosland, The University of Iowa, CCAD
#Nathan Hageman, UCLA School of Medicine
#Xiaoxing Li, Virginia Tech
#Mahnaz Maddah, General Electric Co.
#Vincent Magnotta, The University of Iowa, CCAD
#Harish Doddi, Stanford University
#bjoern menze, CSAIL MIT
#Saikat Pal, Stanford University
#Marcel Prastawa, SCI Institute
#Andrzej Przybyszewski, UMASS
#Marco Ruiz, UCSD
#Mark Scully, The Mind Research Network
#Anuja Sharma, SCI Institute
#Gregory Sharp, MGH
#Xiaodong Tao, General Electric Co.
#Guorong Wu, UNC-Chapel Hill
#Minjeong Kim, UNC Chapel Hill
#Josh Cates, SCI Institute
#Stuart Wallace, MGH
#Michael Ackerman, National Library of Medicine
#Yong Zhang
#Michael Miller, Johns Hopkins University
#Jerry Prince, Johns Hopkins University
#Ross Whitaker, SCI Institute

 
'''The registered attendee list will be posted here by the organizers. DO NOT add your name to this list yourself.'''

AHM 2009

2009-01-08T21:50:38Z

Dgshen: /* Agenda */

__NOTOC__
== Introduction ==
{| border="00" cellpadding="8" cellspacing="0"
|-
| rowspan="2"| '''This is the home page for the 2009 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']].

For information about the January 2009 project week, see below or click [[2009_Winter_Project_Week|'''here''']].

For information about Utah as a travel destination click [http://www.utah.com '''here'''].
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
|-
| style="background: #ebeced"|The 2009 AHM, EAB and Project Week will be held '''January 5-9 2009''', in '''Salt Lake City''', Utah.
|}

== Agenda==

'''wireless connection: capital-ballroom, namic-ballroomB, namic-amethyst''' 

{| border="1" cellpadding="5"
|- style="background:#ebeced; color:black" align="left"
| style="width:4%" | '''Time'''
| style="width:12%" | '''Monday, January 5'''
| style="width:12%" | '''Tuesday, January 6'''
| style="width:12%" | '''Wednesday, January 7'''
| style="width:32%" | '''Thursday, January 8 '''
| style="width:12%" | '''Friday, January 9'''
|-
| style="background:#ffffdd; color:black"|
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#fff6a6; color:#522200"| '''AHM''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Capitol A-B], [[2009_EAB|'''EAB''']] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]
'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus A]
| style="background:#b4d597; color:#522200"|'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
|-
| style="background:#ffffdd; color:black"|'''7:30-8:00'''
| style="background:#ebeced; color:black"|
| style="background:#b4d597; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
| style="background:#fff6a6; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
|-
| style="background:#ffffdd; color:black"|'''8:00-10:00'''
| style="background:#ebeced; color:black"|'''9:30''' Core 1 and 2 PI closed session in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A]
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2009:NITRC and Slicer|How to use NITRC and slicer]] (Steve, Terry) 
'''9:00-10:00''' [[AHM2009:Batchmake and XNAT|Using Batchmake and XNAT to process large studies]] (Stephen Aylward and Dan Marcus) in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2009:Tutorial Review and Judging|Tutorial Review and Judging]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
'''9:00-10:00''' Particle Correspondence Breakout (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''8:00''' [[AHM 2009 Introduction|Introduction]], [http://www.spl.harvard.edu/~kikinis Ron Kikinis] 
'''8:05''' [[AHM 2009 NA-MIC Highlights|NA-MIC Highlights]] ([http://www.cs.utah.edu/~whitaker/ Ross Whitaker]) 
'''Roadmap Projects''' 
'''8:35''': [[AHM2009:JHU|JHU/Queens]] ([http://research.cs.queensu.ca/~gabor/ Gabor Fichtinger]) 
'''8:55''': [[AHM2009:UNC|UNC]] ([http://www.med.unc.edu/psych/directories/faculty/hazlett/ Heather Cody]) 
'''9:15''': [[AHM2009:PNL|PNL]] ([http://pnl.bwh.harvard.edu/people/profiles/kubicki.html Marek Kubicki]) 
'''9.35''': [[AHM2009:Mind|Mind Institute]] ([http://www.mrn.org/principle-investigators/h.-jeremy-bockholt.html Jeremy Bockolt]) 
| style="background:#b4d597; color:black"|Project Work 
|-
| style="background:#ffffdd; color:black"|'''10:00-10:30'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"| '''10:30-11:30'''[[AHM2009:GUI Testing|Automated GUI Testing for Slicer]] (Sebastien) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
|-
| style="background:#ffffdd; color:black"|'''10:30-12:00'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"|Project Work
| style="background:#b4d597; color:black"|Project Work 

| style="background:#fff6a6; color:black"|
'''Collaborations''' 
'''10:30''': [[media:NA-MIC_Mesh_Collaboration_2009.ppt|Iowa collaboration]] ([http://www.engineering.uiowa.edu/faculty-staff/profile-directory/bme/grosland_n.php Nicole Grosland]) 
'''10:45''': [[AHM2009:ExternalWFU|Wake Forest collaboration]] ([http://www.ece.vt.edu/faculty/wyatt.html Chris Wyatt]) 
'''11:00''': [[media:NA-MIC_Cleary_RF_Ablation_Georgetown_Jan_2009.ppt|Georgetown U. collaboration]] ([http://www.isis.georgetown.edu/PORTALVBVS/DesktopDefault.aspx?tabindex=2&tabid=8 Kevin Cleary]) 
'''11:15''': [[media:HAMMER.ppt | UNC collaboration]] ([http://www.med.unc.edu/~dgshen Dinggang Shen]) 
'''11:30''': [[media:AHM2009_MarioNegriCollaboration.pdf | Mario Negri Collaboration]] ([http://villacamozzi.marionegri.it/~luca/ Luca Antiga]) 
'''11:45''': Discussion 
| style="background:#b4d597; color:black"|Project Work
|-
| style="background:#ffffdd; color:black"|'''12:00-1:00'''
| style="background:#b4d597; color:black"| Lunch
| style="background:#b4d597; color:black"| Lunch 
| style="background:#b4d597; color:black"| Lunch 
| style="background:#fff6a6; color:black"| Lunch
| style="background:#b4d597; color:black"| Adjourn
|-
| style="background:#ffffdd; color:black"|'''1:00-3:00'''
| style="background:#b4d597; color:black"|[[2009_Winter_Project_Week|Begin Project Activities]]: Introduce Projects and Participants
| style="background:#b4d597; color:black"|[[AHM 2009:DTI Breakout|DTI Discussion]] (Sonia, Randy, Others) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Amethyst 1]
| style="background:#b4d597; color:black"|Project Work (Capital Ballroom A) '''1:00-2:00''' [[AHM2009:Python Modules|Python Modules]] (Luca Antiga) '''2:00-3:00''' [[media:NAMIC-Widgets-2009-AHM.ppt | VTK Widgets]] (Will Schroeder)
| style="background:#fff6a6; color:black"|
'''Tools and Tutorials''' 
'''1:00-1:20''' [[AHM2009:Slicer|Slicer]] ([http://www.spl.harvard.edu/~pieper Steve Pieper]) 
'''1:20-1:40''' [[AHM2009:Plug-ins|Plug-ins for Slicer]] ([http://wiki.na-mic.org/Wiki/index.php/User:Millerjv Jim Miller]) 
'''1:40-2:00''' [[AHM2009:Non-interactive-tools|Non-interactive tools]] ([http://www.kitware.com/company/team/aylward.html Stephen Aylward]) 
'''2:00-2:30''' (Sonia Pujol)
'''2:30-3:00''' [[AHM2009:Tutorial-Contest-Winners|Tutorial Contest]]: Presentations by the winners ([http://www.nmr.mgh.harvard.edu/martinos/people/showPerson.php?people_id=64 Randy Gollub]) 
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-3:30'''
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-5:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2009:Cell Segmentation|Cell Segmentation]] (Alex G) Project Work [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''3:00-5:00''' Meshing Tutorial (Nicole Grosland, Vincent Magnotta) [[Iowa_Meshing_Tutorial]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#fff6a6; color:black"|[[2008 EAB|EAB]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B] '''3:00-4:00''' Discussion with NA-MIC Leadership '''4:00-5:00''' Closed Session
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''05:00-07:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''05:00-06:00''' [[AHM2009:Meshing Breakout | Meshing Breakout]] (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''6:00''' Optional: [http://www.skisaltlake.com/murphys.htm Beer at Murphy's] (like last year)
| style="background:#ebeced; color:black"|
|}

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

== Dates. Venue. Registration ==
'''Dates:'''
* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 8th'''.
* Project Activities will be held rest of the week between '''Monday, January 5th and Friday, January 9th'''.

'''Venue:''' The venue for the meeting is [http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/ Marriot City Center, Salt Lake City, Utah] Mariott City Center, Salt Lake City, Utah. [http://marriott.com/property/meetingsandevents/floorplans/slccc (Floorplan)]. Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online '''by December 4, 2008''' using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

'''Registration:''' We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008. 

'''Connectivity'''
We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

== Attendees ==

Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should '''NOT''' add their names in this section. This list is a snapshop as of 01:46, 23 December 2008 (UTC)

# Michael Ackerman NA-MIC All Hands Meeting National Library of Medicine at NIH
# Luca Antiga NA-MIC All Hands Meeting and Project Week 2009 Mario Negri Institute
# Kevin Archie NA-MIC All Hands Meeting and Project Week 2009 Washington University
# Nicole Aucoin NA-MIC All Hands Meeting and Project Week 2009 BWH
# Stephen Aylward NA-MIC All Hands Meeting and Project Week 2009 Kitware
# Sebastien Barre NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Morry Blumenfeld NA-MIC All Hands Meeting EAB
# H Jeremy Bockholt NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
# Sylvain Bouix NA-MIC All Hands Meeting and Project Week 2009 PNL
# Josh Cates NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# German Cavelier NA-MIC All Hands Meeting NIH-NIMH
# Kiyoyuki Chinzei NA-MIC All Hands Meeting and Project Week 2009 AIST
# Kevin Cleary NA-MIC All Hands Meeting Georgetown University
# Manasi Datar NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Michal Depa NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Harish Doddi NA-MIC All Hands Meeting and Project Week 2009 Stanford University
# Andriy Fedorov NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Gabor Fichtinger NA-MIC All Hands Meeting Queens Univ
# Yi Gao NA-MIC All Hands Meeting and Project Week 2009
# Arnaud Gelas NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Guido Gerig NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Polina Golland NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Randy L. Gollub NA-MIC All Hands Meeting and Project Week 2009 MGH
# Casey Goodlett NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Alexandre Gouaillard NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Sylvain Gouttard NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Jeffrey Grethe NA-MIC All Hands Meeting and Project Week 2009 UC San Diego
# Nicole Grosland NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Daniel Haehn NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Nathan Hageman NA-MIC All Hands Meeting and Project Week 2009 UCLA
# Nobuhiko Hata NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Kathryn Hayes NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Heather Cody Hazlett NA-MIC All Hands Meeting University of North Carolina
# Jaesung Hong NA-MIC All Hands Meeting and Project Week 2009 Kyushu University
# Luis Ibanez NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Chris Johnson NA-MIC All Hands Meeting and Project Week 2009 EAB
# Ron Kikinis NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
# Ivan Kolesov NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
# Karthik Krishnan NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Marek Kubicki NA-MIC All Hands Meeting and Project Week 2009 PNL_BWH
# Curtis Lisle NA-MIC All Hands Meeting and Project Week 2009 KnowledgeVis, LLC
# Yanling Liu NA-MIC All Hands Meeting and Project Week 2009 SAIC-Frederick, Inc.
# Zhexing Liu NA-MIC All Hands Meeting and Project Week 2009 NIRAL, UNC
# Terry Lorber NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc
# Bill Lorensen NA-MIC All Hands Meeting and Project Week 2009 EAB
# Vincent Magnotta NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Daniel Marcus NA-MIC All Hands Meeting and Project Week 2009 Washington University
# Katie Mastrogiacomo NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
# Cedric Mathieu NA-MIC All Hands Meeting and Project Week 2009 UNC
# Bjoern Menze NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Mikhail Milchenko NA-MIC All Hands Meeting Washington University in St Louis
# James Miller NA-MIC All Hands Meeting and Project Week 2009
# Vandana Mohan NA-MIC All Hands Meeting and Project Week 2009 Georgia Inst of Technology
# kishore mosaliganti NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Sandy Napel NA-MIC All Hands Meeting EAB
# Marc Niethammer NA-MIC All Hands Meeting and Project Week 2009 UNC Chapel Hill
# Guy Nir NA-MIC All Hands Meeting and Project Week 2009 Technion
# Ipek Oguz NA-MIC All Hands Meeting and Project Week 2009 UNC
# Saikat Pal NA-MIC All Hands Meeting and Project Week 2009 Stanford University
# Steve Pieper NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc.
# Marcel Prastawa NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Fred Prior NA-MIC All Hands Meeting EAB
# Sonia Pujol NA-MIC All Hands Meeting and Project Week 2009 Surgical Planning Lab, Brigham Womens Hosp
# Vidya Rajagopalan NA-MIC All Hands Meeting and Project Week 2009 Virginia Tech
# Austin Ramme NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Petter Risholm NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
# James Ross NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Marco Ruiz NA-MIC All Hands Meeting and Project Week 2009 UCSD
# Raul San Jose NA-MIC All Hands Meeting and Project Week 2009 LMI-BWH
# Peter Savadjiev NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
# William Schroeder NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Mark Scully NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
# Madeleine Seeland NA-MIC All Hands Meeting and Project Week 2009 LMI
# Gregory Sharp NA-MIC All Hands Meeting and Project Week 2009 MGH
# Dinggang Shen NA-MIC All Hands Meeting UNC-Chapel Hill
# Kiran Shivanna NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Shantanu Singh NA-MIC All Hands Meeting and Project Week 2009 The Ohio State University
# Martin Styner NA-MIC All Hands Meeting and Project Week 2009 University of North Carolina
# Allen Tannenbaum NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
# Xiaodong Tao NA-MIC All Hands Meeting and Project Week 2009 GE Global Research
# Doug Terry NA-MIC All Hands Meeting and Project Week 2009 Psychiatry Neuroimaging Lab
# Clement Vachet NA-MIC All Hands Meeting and Project Week 2009 UNC
# Koen Van Leemput NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Archana Venkataraman NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Siddharth Vikal NA-MIC All Hands Meeting and Project Week 2009 Queens University
# William Wells NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Carl-Fredrik Westin NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Ross Whitaker NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Nathan Wilson NA-MIC All Hands Meeting Cardiovascular Simulation, Inc.
# Chris Wyatt NA-MIC All Hands Meeting
# Alexander Yarmarkovich NA-MIC All Hands Meeting and Project Week 2009 ISOMIC
# Dr. Terry S Yoo NA-MIC All Hands Meeting DHHSNIHNLM

File:HAMMER.ppt

2009-01-08T21:49:03Z

Dgshen: uploaded a new version of "Image:HAMMER.ppt"

AHM 2009

2009-01-08T21:47:15Z

Dgshen: /* Agenda */

__NOTOC__
== Introduction ==
{| border="00" cellpadding="8" cellspacing="0"
|-
| rowspan="2"| '''This is the home page for the 2009 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']].

For information about the January 2009 project week, see below or click [[2009_Winter_Project_Week|'''here''']].

For information about Utah as a travel destination click [http://www.utah.com '''here'''].
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
|-
| style="background: #ebeced"|The 2009 AHM, EAB and Project Week will be held '''January 5-9 2009''', in '''Salt Lake City''', Utah.
|}

== Agenda==

'''wireless connection: capital-ballroom, namic-ballroomB, namic-amethyst''' 

{| border="1" cellpadding="5"
|- style="background:#ebeced; color:black" align="left"
| style="width:4%" | '''Time'''
| style="width:12%" | '''Monday, January 5'''
| style="width:12%" | '''Tuesday, January 6'''
| style="width:12%" | '''Wednesday, January 7'''
| style="width:32%" | '''Thursday, January 8 '''
| style="width:12%" | '''Friday, January 9'''
|-
| style="background:#ffffdd; color:black"|
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#fff6a6; color:#522200"| '''AHM''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Capitol A-B], [[2009_EAB|'''EAB''']] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]
'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus A]
| style="background:#b4d597; color:#522200"|'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
|-
| style="background:#ffffdd; color:black"|'''7:30-8:00'''
| style="background:#ebeced; color:black"|
| style="background:#b4d597; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
| style="background:#fff6a6; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
|-
| style="background:#ffffdd; color:black"|'''8:00-10:00'''
| style="background:#ebeced; color:black"|'''9:30''' Core 1 and 2 PI closed session in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A]
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2009:NITRC and Slicer|How to use NITRC and slicer]] (Steve, Terry) 
'''9:00-10:00''' [[AHM2009:Batchmake and XNAT|Using Batchmake and XNAT to process large studies]] (Stephen Aylward and Dan Marcus) in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2009:Tutorial Review and Judging|Tutorial Review and Judging]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
'''9:00-10:00''' Particle Correspondence Breakout (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''8:00''' [[AHM 2009 Introduction|Introduction]], [http://www.spl.harvard.edu/~kikinis Ron Kikinis] 
'''8:05''' [[AHM 2009 NA-MIC Highlights|NA-MIC Highlights]] ([http://www.cs.utah.edu/~whitaker/ Ross Whitaker]) 
'''Roadmap Projects''' 
'''8:35''': [[AHM2009:JHU|JHU/Queens]] ([http://research.cs.queensu.ca/~gabor/ Gabor Fichtinger]) 
'''8:55''': [[AHM2009:UNC|UNC]] ([http://www.med.unc.edu/psych/directories/faculty/hazlett/ Heather Cody]) 
'''9:15''': [[AHM2009:PNL|PNL]] ([http://pnl.bwh.harvard.edu/people/profiles/kubicki.html Marek Kubicki]) 
'''9.35''': [[AHM2009:Mind|Mind Institute]] ([http://www.mrn.org/principle-investigators/h.-jeremy-bockholt.html Jeremy Bockolt]) 
| style="background:#b4d597; color:black"|Project Work 
|-
| style="background:#ffffdd; color:black"|'''10:00-10:30'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"| '''10:30-11:30'''[[AHM2009:GUI Testing|Automated GUI Testing for Slicer]] (Sebastien) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
|-
| style="background:#ffffdd; color:black"|'''10:30-12:00'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"|Project Work
| style="background:#b4d597; color:black"|Project Work 

| style="background:#fff6a6; color:black"|
'''Collaborations''' 
'''10:30''': [[media:NA-MIC_Mesh_Collaboration_2009.ppt|Iowa collaboration]] ([http://www.engineering.uiowa.edu/faculty-staff/profile-directory/bme/grosland_n.php Nicole Grosland]) 
'''10:45''': [[AHM2009:ExternalWFU|Wake Forest collaboration]] ([http://www.ece.vt.edu/faculty/wyatt.html Chris Wyatt]) 
'''11:00''': [[media:NA-MIC_Cleary_RF_Ablation_Georgetown_Jan_2009.ppt|Georgetown U. collaboration]] ([http://www.isis.georgetown.edu/PORTALVBVS/DesktopDefault.aspx?tabindex=2&tabid=8 Kevin Cleary]) 
'''11:15''': [[media:HAMMER1.ppt | UNC collaboration]] ([http://www.med.unc.edu/~dgshen Dinggang Shen]) 
'''11:30''': [[media:AHM2009_MarioNegriCollaboration.pdf | Mario Negri Collaboration]] ([http://villacamozzi.marionegri.it/~luca/ Luca Antiga]) 
'''11:45''': Discussion 
| style="background:#b4d597; color:black"|Project Work
|-
| style="background:#ffffdd; color:black"|'''12:00-1:00'''
| style="background:#b4d597; color:black"| Lunch
| style="background:#b4d597; color:black"| Lunch 
| style="background:#b4d597; color:black"| Lunch 
| style="background:#fff6a6; color:black"| Lunch
| style="background:#b4d597; color:black"| Adjourn
|-
| style="background:#ffffdd; color:black"|'''1:00-3:00'''
| style="background:#b4d597; color:black"|[[2009_Winter_Project_Week|Begin Project Activities]]: Introduce Projects and Participants
| style="background:#b4d597; color:black"|[[AHM 2009:DTI Breakout|DTI Discussion]] (Sonia, Randy, Others) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Amethyst 1]
| style="background:#b4d597; color:black"|Project Work (Capital Ballroom A) '''1:00-2:00''' [[AHM2009:Python Modules|Python Modules]] (Luca Antiga) '''2:00-3:00''' [[media:NAMIC-Widgets-2009-AHM.ppt | VTK Widgets]] (Will Schroeder)
| style="background:#fff6a6; color:black"|
'''Tools and Tutorials''' 
'''1:00-1:20''' [[AHM2009:Slicer|Slicer]] ([http://www.spl.harvard.edu/~pieper Steve Pieper]) 
'''1:20-1:40''' [[AHM2009:Plug-ins|Plug-ins for Slicer]] ([http://wiki.na-mic.org/Wiki/index.php/User:Millerjv Jim Miller]) 
'''1:40-2:00''' [[AHM2009:Non-interactive-tools|Non-interactive tools]] ([http://www.kitware.com/company/team/aylward.html Stephen Aylward]) 
'''2:00-2:30''' (Sonia Pujol)
'''2:30-3:00''' [[AHM2009:Tutorial-Contest-Winners|Tutorial Contest]]: Presentations by the winners ([http://www.nmr.mgh.harvard.edu/martinos/people/showPerson.php?people_id=64 Randy Gollub]) 
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-3:30'''
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-5:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2009:Cell Segmentation|Cell Segmentation]] (Alex G) Project Work [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''3:00-5:00''' Meshing Tutorial (Nicole Grosland, Vincent Magnotta) [[Iowa_Meshing_Tutorial]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#fff6a6; color:black"|[[2008 EAB|EAB]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B] '''3:00-4:00''' Discussion with NA-MIC Leadership '''4:00-5:00''' Closed Session
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''05:00-07:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''05:00-06:00''' [[AHM2009:Meshing Breakout | Meshing Breakout]] (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''6:00''' Optional: [http://www.skisaltlake.com/murphys.htm Beer at Murphy's] (like last year)
| style="background:#ebeced; color:black"|
|}

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

== Dates. Venue. Registration ==
'''Dates:'''
* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 8th'''.
* Project Activities will be held rest of the week between '''Monday, January 5th and Friday, January 9th'''.

'''Venue:''' The venue for the meeting is [http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/ Marriot City Center, Salt Lake City, Utah] Mariott City Center, Salt Lake City, Utah. [http://marriott.com/property/meetingsandevents/floorplans/slccc (Floorplan)]. Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online '''by December 4, 2008''' using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

'''Registration:''' We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008. 

'''Connectivity'''
We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

== Attendees ==

Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should '''NOT''' add their names in this section. This list is a snapshop as of 01:46, 23 December 2008 (UTC)

# Michael Ackerman NA-MIC All Hands Meeting National Library of Medicine at NIH
# Luca Antiga NA-MIC All Hands Meeting and Project Week 2009 Mario Negri Institute
# Kevin Archie NA-MIC All Hands Meeting and Project Week 2009 Washington University
# Nicole Aucoin NA-MIC All Hands Meeting and Project Week 2009 BWH
# Stephen Aylward NA-MIC All Hands Meeting and Project Week 2009 Kitware
# Sebastien Barre NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Morry Blumenfeld NA-MIC All Hands Meeting EAB
# H Jeremy Bockholt NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
# Sylvain Bouix NA-MIC All Hands Meeting and Project Week 2009 PNL
# Josh Cates NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# German Cavelier NA-MIC All Hands Meeting NIH-NIMH
# Kiyoyuki Chinzei NA-MIC All Hands Meeting and Project Week 2009 AIST
# Kevin Cleary NA-MIC All Hands Meeting Georgetown University
# Manasi Datar NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Michal Depa NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Harish Doddi NA-MIC All Hands Meeting and Project Week 2009 Stanford University
# Andriy Fedorov NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Gabor Fichtinger NA-MIC All Hands Meeting Queens Univ
# Yi Gao NA-MIC All Hands Meeting and Project Week 2009
# Arnaud Gelas NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Guido Gerig NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Polina Golland NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Randy L. Gollub NA-MIC All Hands Meeting and Project Week 2009 MGH
# Casey Goodlett NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Alexandre Gouaillard NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Sylvain Gouttard NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Jeffrey Grethe NA-MIC All Hands Meeting and Project Week 2009 UC San Diego
# Nicole Grosland NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Daniel Haehn NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Nathan Hageman NA-MIC All Hands Meeting and Project Week 2009 UCLA
# Nobuhiko Hata NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Kathryn Hayes NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Heather Cody Hazlett NA-MIC All Hands Meeting University of North Carolina
# Jaesung Hong NA-MIC All Hands Meeting and Project Week 2009 Kyushu University
# Luis Ibanez NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Chris Johnson NA-MIC All Hands Meeting and Project Week 2009 EAB
# Ron Kikinis NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
# Ivan Kolesov NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
# Karthik Krishnan NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Marek Kubicki NA-MIC All Hands Meeting and Project Week 2009 PNL_BWH
# Curtis Lisle NA-MIC All Hands Meeting and Project Week 2009 KnowledgeVis, LLC
# Yanling Liu NA-MIC All Hands Meeting and Project Week 2009 SAIC-Frederick, Inc.
# Zhexing Liu NA-MIC All Hands Meeting and Project Week 2009 NIRAL, UNC
# Terry Lorber NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc
# Bill Lorensen NA-MIC All Hands Meeting and Project Week 2009 EAB
# Vincent Magnotta NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Daniel Marcus NA-MIC All Hands Meeting and Project Week 2009 Washington University
# Katie Mastrogiacomo NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
# Cedric Mathieu NA-MIC All Hands Meeting and Project Week 2009 UNC
# Bjoern Menze NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Mikhail Milchenko NA-MIC All Hands Meeting Washington University in St Louis
# James Miller NA-MIC All Hands Meeting and Project Week 2009
# Vandana Mohan NA-MIC All Hands Meeting and Project Week 2009 Georgia Inst of Technology
# kishore mosaliganti NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Sandy Napel NA-MIC All Hands Meeting EAB
# Marc Niethammer NA-MIC All Hands Meeting and Project Week 2009 UNC Chapel Hill
# Guy Nir NA-MIC All Hands Meeting and Project Week 2009 Technion
# Ipek Oguz NA-MIC All Hands Meeting and Project Week 2009 UNC
# Saikat Pal NA-MIC All Hands Meeting and Project Week 2009 Stanford University
# Steve Pieper NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc.
# Marcel Prastawa NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Fred Prior NA-MIC All Hands Meeting EAB
# Sonia Pujol NA-MIC All Hands Meeting and Project Week 2009 Surgical Planning Lab, Brigham Womens Hosp
# Vidya Rajagopalan NA-MIC All Hands Meeting and Project Week 2009 Virginia Tech
# Austin Ramme NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Petter Risholm NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
# James Ross NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Marco Ruiz NA-MIC All Hands Meeting and Project Week 2009 UCSD
# Raul San Jose NA-MIC All Hands Meeting and Project Week 2009 LMI-BWH
# Peter Savadjiev NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
# William Schroeder NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Mark Scully NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
# Madeleine Seeland NA-MIC All Hands Meeting and Project Week 2009 LMI
# Gregory Sharp NA-MIC All Hands Meeting and Project Week 2009 MGH
# Dinggang Shen NA-MIC All Hands Meeting UNC-Chapel Hill
# Kiran Shivanna NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Shantanu Singh NA-MIC All Hands Meeting and Project Week 2009 The Ohio State University
# Martin Styner NA-MIC All Hands Meeting and Project Week 2009 University of North Carolina
# Allen Tannenbaum NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
# Xiaodong Tao NA-MIC All Hands Meeting and Project Week 2009 GE Global Research
# Doug Terry NA-MIC All Hands Meeting and Project Week 2009 Psychiatry Neuroimaging Lab
# Clement Vachet NA-MIC All Hands Meeting and Project Week 2009 UNC
# Koen Van Leemput NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Archana Venkataraman NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Siddharth Vikal NA-MIC All Hands Meeting and Project Week 2009 Queens University
# William Wells NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Carl-Fredrik Westin NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Ross Whitaker NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Nathan Wilson NA-MIC All Hands Meeting Cardiovascular Simulation, Inc.
# Chris Wyatt NA-MIC All Hands Meeting
# Alexander Yarmarkovich NA-MIC All Hands Meeting and Project Week 2009 ISOMIC
# Dr. Terry S Yoo NA-MIC All Hands Meeting DHHSNIHNLM

File:HAMMER.ppt

2009-01-07T23:40:34Z

Dgshen:

AHM 2009

2009-01-07T23:38:39Z

Dgshen: /* Agenda */

__NOTOC__
== Introduction ==
{| border="00" cellpadding="8" cellspacing="0"
|-
| rowspan="2"| '''This is the home page for the 2009 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']].

For information about the January 2009 project week, see below or click [[2009_Winter_Project_Week|'''here''']].

For information about Utah as a travel destination click [http://www.utah.com '''here'''].
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
|-
| style="background: #ebeced"|The 2009 AHM, EAB and Project Week will be held '''January 5-9 2009''', in '''Salt Lake City''', Utah.
|}

== Agenda==

'''wireless connection: capital-ballroom, namic-ballroomB, namic-amethyst''' 

{| border="1" cellpadding="5"
|- style="background:#ebeced; color:black" align="left"
| style="width:4%" | '''Time'''
| style="width:12%" | '''Monday, January 5'''
| style="width:12%" | '''Tuesday, January 6'''
| style="width:12%" | '''Wednesday, January 7'''
| style="width:32%" | '''Thursday, January 8 '''
| style="width:12%" | '''Friday, January 9'''
|-
| style="background:#ffffdd; color:black"|
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#b4d597; color:#522200"| '''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
| style="background:#fff6a6; color:#522200"| '''AHM''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Capitol A-B], [[2009_EAB|'''EAB''']] in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B]
'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus A]
| style="background:#b4d597; color:#522200"|'''[[2009_Winter_Project_Week|Project Activities]] ''' in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol B-C]
|-
| style="background:#ffffdd; color:black"|'''7:30-8:00'''
| style="background:#ebeced; color:black"|
| style="background:#b4d597; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
| style="background:#fff6a6; color:black"| Breakfast
| style="background:#b4d597; color:black"| Breakfast
|-
| style="background:#ffffdd; color:black"|'''8:00-10:00'''
| style="background:#ebeced; color:black"|'''9:30''' Core 1 and 2 PI closed session in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Capitol A]
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2009:NITRC and Slicer|How to use NITRC and slicer]] (Steve, Terry) 
'''9:00-10:00''' [[AHM2009:Batchmake and XNAT|Using Batchmake and XNAT to process large studies]] (Stephen Aylward and Dan Marcus) in [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''8:00-9:00''' [[AHM2009:Tutorial Review and Judging|Tutorial Review and Judging]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
'''9:00-10:00''' Particle Correspondence Breakout (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''8:00''' [[AHM 2009 Introduction|Introduction]], [http://www.spl.harvard.edu/~kikinis Ron Kikinis] 
'''8:05''' [[AHM 2009 NA-MIC Highlights|NA-MIC Highlights]] ([http://www.cs.utah.edu/~whitaker/ Ross Whitaker]) 
'''Roadmap Projects''' 
'''8:35''': [[AHM2009:JHU|JHU/Queens]] ([http://research.cs.queensu.ca/~gabor/ Gabor Fichtinger]) 
'''8:55''': [[AHM2009:UNC|UNC]] ([http://www.med.unc.edu/psych/directories/hazlett.htm Heather Cody]) 
'''9:15''': [[AHM2009:PNL|PNL]] ([http://pnl.bwh.harvard.edu/people/profiles/kubicki.html Marek Kubicki]) 
'''9.35''': [[AHM2009:Mind|Mind Institute]] ([http://www.mrn.org/principle-investigators/h.-jeremy-bockholt.html Jeremy Bockolt]) 
| style="background:#b4d597; color:black"|Project Work 
|-
| style="background:#ffffdd; color:black"|'''10:00-10:30'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"| '''10:30-11:30'''[[AHM2009:GUI Testing|Automated GUI Testing for Slicer]] (Sebastien) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
|-
| style="background:#ffffdd; color:black"|'''10:30-12:00'''
| style="background:#ebeced; color:black"| Core 1 and 2 PI closed session
| style="background:#b4d597; color:black"|Project Work
| style="background:#b4d597; color:black"|Project Work 

| style="background:#fff6a6; color:black"|
'''Collaborations''' 
'''10:30''': Iowa collaboration ([http://www.engineering.uiowa.edu/faculty-staff/profile-directory/bme/grosland_n.php Nicole Grosland]) 
'''10:45''': Wake Forest collaboration ([http://www.ece.vt.edu/faculty/wyatt.html Chris Wyatt]) 
'''11:00''': Georgetown U. collaboration ([http://www.isis.georgetown.edu/PORTALVBVS/DesktopDefault.aspx?tabindex=2&tabid=8 Kevin Cleary]) 
'''11:15''': [[media:HAMMER.ppt | UNC collaboration]] ([http://www.med.unc.edu/~dgshen Dinggang Shen]) 
'''11:30''': Mario Negri Collaboration ([http://villacamozzi.marionegri.it/~luca/ Luca Antiga]) 
'''11:45''': Discussion 
| style="background:#b4d597; color:black"|Project Work
|-
| style="background:#ffffdd; color:black"|'''12:00-1:00'''
| style="background:#b4d597; color:black"| Lunch
| style="background:#b4d597; color:black"| Lunch 
| style="background:#b4d597; color:black"| Lunch 
| style="background:#fff6a6; color:black"| Lunch
| style="background:#b4d597; color:black"| Adjourn
|-
| style="background:#ffffdd; color:black"|'''1:00-3:00'''
| style="background:#b4d597; color:black"|[[2009_Winter_Project_Week|Begin Project Activities]]: Introduce Projects and Participants
| style="background:#b4d597; color:black"|[[AHM 2009:DTI Breakout|DTI Discussion]] (Sonia, Randy, Others) [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/Amethyst 1]
| style="background:#b4d597; color:black"|Project Work (Capital Ballroom A) '''1:00-2:00''' [[AHM2009:Python Modules|Python Modules]] (Luca Antiga) '''2:00-3:00''' [[AHM2009:VTKWidgets | VTK Widgets]] (Will Schroeder)
| style="background:#fff6a6; color:black"|
'''Tools and Tutorials''' (coordinator) 
'''1:00-1:20''' [[AHM2009:Slicer|Slicer]] ([http://www.spl.harvard.edu/~pieper Steve Pieper]) 
'''1:20-1:40''' [[AHM2009:Plug-ins|Plug-ins for Slicer]] ([http://wiki.na-mic.org/Wiki/index.php/User:Millerjv Jim Miller]) 
'''1:40-2:00''' [[AHM2009:Non-interactive-tools|Non-interactive tools]] ([http://www.kitware.com/company/team/aylward.html Stephen Aylward]) 
'''2:00-3:00''' [[AHM2009:Tutorial-Contest-Winners|Tutorial Contest]]: Presentations by the winners ([http://www.nmr.mgh.harvard.edu/martinos/people/showPerson.php?people_id=64 Randy Gollub]) 
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-3:30'''
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#b4d597; color:black"| Coffee
| style="background:#fff6a6; color:black"| Coffee
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''3:00-5:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''3:30-4:30''' [[AHM2009:Cell Segmentation|Cell Segmentation]] (Alex G) Project Work [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#b4d597; color:black"|Project Work '''3:00-5:00''' Meshing Tutorial (Nicole Grosland, Vincent Magnotta) [[Iowa_Meshing_Tutorial]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Amethyst 1]
| style="background:#fff6a6; color:black"|[[2008 EAB|EAB]] [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Olympus B] '''3:00-4:00''' Discussion with NA-MIC Leadership '''4:00-5:00''' Closed Session
| style="background:#ebeced; color:black"|
|-
| style="background:#ffffdd; color:black"|'''05:00-07:00'''
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|
| style="background:#b4d597; color:black"|'''05:00-06:00''' [[AHM2009:Meshing Breakout | Meshing Breakout]] (Capital Ballroom A)
| style="background:#fff6a6; color:black"|'''6:00''' Optional: [http://www.skisaltlake.com/murphys.htm Beer at Murphy's] (like last year)
| style="background:#ebeced; color:black"|
|}

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

== Dates. Venue. Registration ==
'''Dates:'''
* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 8th'''.
* Project Activities will be held rest of the week between '''Monday, January 5th and Friday, January 9th'''.

'''Venue:''' The venue for the meeting is [http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/ Marriot City Center, Salt Lake City, Utah] Mariott City Center, Salt Lake City, Utah. [http://marriott.com/property/meetingsandevents/floorplans/slccc (Floorplan)]. Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online '''by December 4, 2008''' using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

'''Registration:''' We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008. 

'''Connectivity'''
We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

== Attendees ==

Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should '''NOT''' add their names in this section. This list is a snapshop as of 01:46, 23 December 2008 (UTC)

# Michael Ackerman NA-MIC All Hands Meeting National Library of Medicine at NIH
# Luca Antiga NA-MIC All Hands Meeting and Project Week 2009 Mario Negri Institute
# Kevin Archie NA-MIC All Hands Meeting and Project Week 2009 Washington University
# Nicole Aucoin NA-MIC All Hands Meeting and Project Week 2009 BWH
# Stephen Aylward NA-MIC All Hands Meeting and Project Week 2009 Kitware
# Sebastien Barre NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Morry Blumenfeld NA-MIC All Hands Meeting EAB
# H Jeremy Bockholt NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
# Sylvain Bouix NA-MIC All Hands Meeting and Project Week 2009 PNL
# Josh Cates NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# German Cavelier NA-MIC All Hands Meeting NIH-NIMH
# Kiyoyuki Chinzei NA-MIC All Hands Meeting and Project Week 2009 AIST
# Kevin Cleary NA-MIC All Hands Meeting Georgetown University
# Manasi Datar NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Michal Depa NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Harish Doddi NA-MIC All Hands Meeting and Project Week 2009 Stanford University
# Andriy Fedorov NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Gabor Fichtinger NA-MIC All Hands Meeting Queens Univ
# Yi Gao NA-MIC All Hands Meeting and Project Week 2009
# Arnaud Gelas NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Guido Gerig NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Polina Golland NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Randy L. Gollub NA-MIC All Hands Meeting and Project Week 2009 MGH
# Casey Goodlett NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Alexandre Gouaillard NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Sylvain Gouttard NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Jeffrey Grethe NA-MIC All Hands Meeting and Project Week 2009 UC San Diego
# Nicole Grosland NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Daniel Haehn NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Nathan Hageman NA-MIC All Hands Meeting and Project Week 2009 UCLA
# Nobuhiko Hata NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Kathryn Hayes NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Heather Cody Hazlett NA-MIC All Hands Meeting University of North Carolina
# Jaesung Hong NA-MIC All Hands Meeting and Project Week 2009 Kyushu University
# Luis Ibanez NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Chris Johnson NA-MIC All Hands Meeting and Project Week 2009 EAB
# Ron Kikinis NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
# Ivan Kolesov NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
# Karthik Krishnan NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Marek Kubicki NA-MIC All Hands Meeting and Project Week 2009 PNL_BWH
# Curtis Lisle NA-MIC All Hands Meeting and Project Week 2009 KnowledgeVis, LLC
# Yanling Liu NA-MIC All Hands Meeting and Project Week 2009 SAIC-Frederick, Inc.
# Zhexing Liu NA-MIC All Hands Meeting and Project Week 2009 NIRAL, UNC
# Terry Lorber NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc
# Bill Lorensen NA-MIC All Hands Meeting and Project Week 2009 EAB
# Vincent Magnotta NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Daniel Marcus NA-MIC All Hands Meeting and Project Week 2009 Washington University
# Katie Mastrogiacomo NA-MIC All Hands Meeting and Project Week 2009 SPL - BWH
# Cedric Mathieu NA-MIC All Hands Meeting and Project Week 2009 UNC
# Bjoern Menze NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Mikhail Milchenko NA-MIC All Hands Meeting Washington University in St Louis
# James Miller NA-MIC All Hands Meeting and Project Week 2009
# Vandana Mohan NA-MIC All Hands Meeting and Project Week 2009 Georgia Inst of Technology
# kishore mosaliganti NA-MIC All Hands Meeting and Project Week 2009 Harvard Medical School
# Sandy Napel NA-MIC All Hands Meeting EAB
# Marc Niethammer NA-MIC All Hands Meeting and Project Week 2009 UNC Chapel Hill
# Guy Nir NA-MIC All Hands Meeting and Project Week 2009 Technion
# Ipek Oguz NA-MIC All Hands Meeting and Project Week 2009 UNC
# Saikat Pal NA-MIC All Hands Meeting and Project Week 2009 Stanford University
# Steve Pieper NA-MIC All Hands Meeting and Project Week 2009 Isomics, Inc.
# Marcel Prastawa NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Fred Prior NA-MIC All Hands Meeting EAB
# Sonia Pujol NA-MIC All Hands Meeting and Project Week 2009 Surgical Planning Lab, Brigham Womens Hosp
# Vidya Rajagopalan NA-MIC All Hands Meeting and Project Week 2009 Virginia Tech
# Austin Ramme NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Petter Risholm NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
# James Ross NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Marco Ruiz NA-MIC All Hands Meeting and Project Week 2009 UCSD
# Raul San Jose NA-MIC All Hands Meeting and Project Week 2009 LMI-BWH
# Peter Savadjiev NA-MIC All Hands Meeting and Project Week 2009 Brigham Womens Hospital
# William Schroeder NA-MIC All Hands Meeting and Project Week 2009 Kitware, Inc.
# Mark Scully NA-MIC All Hands Meeting and Project Week 2009 The Mind Research Network
# Madeleine Seeland NA-MIC All Hands Meeting and Project Week 2009 LMI
# Gregory Sharp NA-MIC All Hands Meeting and Project Week 2009 MGH
# Dinggang Shen NA-MIC All Hands Meeting UNC-Chapel Hill
# Kiran Shivanna NA-MIC All Hands Meeting and Project Week 2009 The University of Iowa
# Shantanu Singh NA-MIC All Hands Meeting and Project Week 2009 The Ohio State University
# Martin Styner NA-MIC All Hands Meeting and Project Week 2009 University of North Carolina
# Allen Tannenbaum NA-MIC All Hands Meeting and Project Week 2009 Georgia Tech
# Xiaodong Tao NA-MIC All Hands Meeting and Project Week 2009 GE Global Research
# Doug Terry NA-MIC All Hands Meeting and Project Week 2009 Psychiatry Neuroimaging Lab
# Clement Vachet NA-MIC All Hands Meeting and Project Week 2009 UNC
# Koen Van Leemput NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Archana Venkataraman NA-MIC All Hands Meeting and Project Week 2009 MIT CSAIL
# Siddharth Vikal NA-MIC All Hands Meeting and Project Week 2009 Queens University
# William Wells NA-MIC All Hands Meeting and Project Week 2009 SPL-BWH
# Carl-Fredrik Westin NA-MIC All Hands Meeting and Project Week 2009 Brigham and Womens Hospital
# Ross Whitaker NA-MIC All Hands Meeting and Project Week 2009 SCI Institute
# Nathan Wilson NA-MIC All Hands Meeting Cardiovascular Simulation, Inc.
# Chris Wyatt NA-MIC All Hands Meeting
# Alexander Yarmarkovich NA-MIC All Hands Meeting and Project Week 2009 ISOMIC
# Dr. Terry S Yoo NA-MIC All Hands Meeting DHHSNIHNLM