DBP1:Harvard

2007-12-18T17:35:06Z

Dougm:

Dougm:

Back to [[DBP1:Main|NA-MIC DBP 1]]
__NOTOC__
= Overview of Harvard PNL DBP 1 =

<Overview here>

For more introductory information, follow this [[DBP:Harvard|link]].

= Harvard PNL Projects =

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== [[Projects:ShapeAnalysisOfBrainStructures|Shape Analysis of Brain Structures]] ==

In this work, we present shape analysis algorithms for brain structures. [[Projects:ShapeAnalysisOfBrainStructures|More...]]

<font color="red">'''New: '''</font> G Gerig, S Joshi, T Fletcher, K Gorczowski, S Xu, S M. Pizer, M Styner: Statistics of populations of images and its embedded objects: Driving applications in neuroimaging, IEEE Symposium on Biomedical Imaging ISBI 2006.

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| | [[Image:Dti-UNC.jpg|200px]]
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== [[DBP:Harvard:Collaboration:UNC|Algorithms: Diffusion Tensor Imaging (PNL-UNC)]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:UNC|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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| | [[Image:Clustering_small.png|200px]]
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== [[DBP:Harvard:Collaboration:MITDTI|Algorithms: Diffusion Tensor Imaging (PNL-MIT)]] ==
This collaborative project focuses on the analysis of diffusion tensor images of the brain, including clustering analysis of fiber tractography. [[DBP:Harvard:Collaboration:MITDTI|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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| | [[Image:Seg-MIT.jpg|200px]]
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== [[DBP:Harvard:Collaboration:MIT|Algorithms: Anatomical Segmentation (PNL-MIT)]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:MIT|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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| | [[Image:Striatum-GAT.jpg|200px]]
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== [[DBP:Harvard:Collaboration:GTech|Algorithms: Rule-based Segmentation (PNL-GaTech)]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:GTech|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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== [[DBP:Harvard:Collaboration:Utah|Algorithms: Tensor Based Statistics (PNL-Utah)]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:Utah|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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== [[DBP:Harvard:Collaboration:Slicer|Engineering: Slicer Improvement and Testing]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:Slicer|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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| | [[Image:Placeholder.jpg|200px]]
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== [[DBP:Harvard:Collaboration:Training|Training: Training Material and Expert Users Feedback]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:Training|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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== [[DBP:Harvard:Collaboration:Toronto|Biology: Genetics and Imaging (Toronto)]] ==

Here we write a very brief description of this project. Notice a representative image is chosen from the project and places in the left column. [[DBP:Harvard:Collaboration:Toronto|More...]]

<font color="red">'''New: '''</font> Here we give something new and exciting about the project. The most recent publication on this project is very appropriate for this slot.

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2007-12-17T17:44:43Z

Dougm:

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__NOTOC__
===Key Investigators===
* BWH: Marek Kubicki, Tri Ngo, Doug Markant

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<h1>Objective</h1>
The objective of this project is to use the Stochastic Tractography Filter in Slicer3 in a group comparison of the arcuate fasciculus.

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<h1>Approach, Plan </h1>
The Stochastic Tractography Filter has been integrated into Slicer3. Our approach is to use ROIs automatically generated from the Freesurfer reconstruction to generate connectivity maps of the arcuate fasciculus in matched groups of healthy controls and chronic schizophrenic patients. We will investigate how best to measure the diffusion properties of the tracts generated by this filter and how to facilitate a group comparison.

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<h1>Progress</h1>

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