https://www.na-mic.org/w/api.php?action=feedcontributions&feedformat=atom&user=HelmerNAMIC Wiki - User contributions [en]2026-04-04T01:02:24ZUser contributionsMediaWiki 1.33.0https://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8432Mbirn:SpringConference20072007-03-21T20:22:03Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/> <br/><br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Applications (Requirments Gathering for web services to support APIs) <br/><br />
:Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)<br />
:XNAT and QDEC (Tim O, FreeSurfer rep)<br />
:Provenance (Mohana, Nicole A) <br />
<br/><br />
*Afternoon (3:30-5:00PM) <br/><br />
Development of common web services to support applications <br/> <br />
Definition of "mBIRN ver. 1" <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8431Mbirn:SpringConference20072007-03-21T19:48:17Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/> <br/><br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Applications (Requirments Gathering for web services to support APIs) <br/><br />
:Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)<br />
:XNAT and QDEC (Tim O, FreeSurfer rep)<br />
:Provenance (Mohana, Nicole A) <br />
<br/><br />
*Afternoon (3:30-5:00PM) <br/><br />
Development of common web services to support applications <br/> <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8430Mbirn:SpringConference20072007-03-21T19:47:40Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/> <br/><br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Applications (Requirments Gathering for web services to support APIs) <br/><br />
:Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)<br />
:XNAT and QDEC (Tim O, FreeSurfer rep)<br />
:Provenance (Mohana, Nicole A) <br />
<br/><br />
*Afternoon (3:30-5:00PM) <br/><br />
Development of common web services to support applications <br/> <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8429Mbirn:SpringConference20072007-03-21T19:46:33Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/> <br/><br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Applications (Requirments Gathering for web services to support APIs) <br/><br />
:Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)<br />
:XNAT and QDEC (Tim O, FreeSurfer rep)<br />
:Provenance (Mohana, Nicole A) <br />
<br />
*Afternoon (3:30-5:00PM) <br/><br />
Development of common web services to support applications <br/> <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8428Mbirn:SpringConference20072007-03-21T19:44:19Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Applications (Requirments Gathering for web services to support APIs) <br/><br />
:Visualization (Dan M, Steve P, Matt M, FreeSurfer rep)<br />
:XNAT and QDEC (Tim O, FreeSurfer rep)<br />
:Provenance (Mohana, Nicole A) <br />
<br />
*Afternoon (3:30-5:00PM) <br/><br />
Development of common web services to support applications <br/> <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8427Mbirn:SpringConference20072007-03-21T19:41:41Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Applications (Requirments Gathering for web services to support APIs) <br/><br />
Visualization (Dan M, Steve P, Matt M, FreeSurfer rep) <br/><br />
XNAT and QDEC (Tim O, FreeSurfer rep)<br />
Provenance (Mohana, Nicole A) <br />
<br />
*Afternoon (3:30-5:00PM) <br/><br />
Development of common web services to support applications <br/> <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8426Mbirn:SpringConference20072007-03-21T19:36:42Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer, XML representation: Dan M, Dave K, Jeff G, Nicole A, Bruce F<br/><br />
Workflow Workbench / Eclipse plug-in: Mike M, Brian B, Ramil M, Gelnn H, Evan M, Ding Ying W, Mohana R, Tim O <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
'''9:30-12:00''' <br/><br />
Workflows / Portal Working Group - working time + demonstrations of the LDDMM, LONI pipelines and Eclipse-based workflow demonstration<br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Visualization and Analysis Working Group <br/><br />
DTI Working Session ''(DTI session will begin with 5 minute updates from each participating site)'' <br/><br />
<br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Bennet Landman, Jim Fallon, Berj Gimi, Karl Helmer) will run throughout Thursday. <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-3:15PM) <br/><br />
DTI Working Session <br/><br />
Aplications (Requirments Gathering for web services to support APIs) <br/><br />
<br />
<br />
<br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8424Mbirn:SpringConference20072007-03-21T19:17:47Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe [[media:CollaborativePortal.pdf | slides]];<br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) [[media:AHM_XNAT_Overview.ppt | slides]];<br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer/QDEC <br/><br />
Workflow Workbench / Eclipse plug-in <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=File:Murphy_workflow_AHM.ppt&diff=8423File:Murphy workflow AHM.ppt2007-03-21T19:14:28Z<p>Helmer: </p>
<hr />
<div></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8422Mbirn:SpringConference20072007-03-21T19:13:57Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy_workflow_AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer/QDEC <br/><br />
Workflow Workbench / Eclipse plug-in <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8421Mbirn:SpringConference20072007-03-21T19:12:31Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy (MGH) [[media:Murphy workflow AHM.ppt | slides]]; <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer/QDEC <br/><br />
Workflow Workbench / Eclipse plug-in <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=File:Murphy_Workflow_AHM_2007-Wed.ppt&diff=8420File:Murphy Workflow AHM 2007-Wed.ppt2007-03-21T19:09:53Z<p>Helmer: </p>
<hr />
<div></div>Helmerhttps://www.na-mic.org/w/index.php?title=File:CollaborativePortal.pdf&diff=8419File:CollaborativePortal.pdf2007-03-21T19:09:08Z<p>Helmer: </p>
<hr />
<div></div>Helmerhttps://www.na-mic.org/w/index.php?title=File:AHM_XNAT_Overview.ppt&diff=8418File:AHM XNAT Overview.ppt2007-03-21T19:07:22Z<p>Helmer: WUSTL Wed update</p>
<hr />
<div>WUSTL Wed update</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8417Mbirn:SpringConference20072007-03-21T18:37:23Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245. There will be someone<br />
at the door to let you in as the door is secured.<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer/QDEC <br/><br />
Workflow Workbench / Eclipse plug-in <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8416Mbirn:SpringConference20072007-03-21T18:35:28Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3) [[media:Slicer3-update-2007-03-21.ppt | slides]]; Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI) [[media:Jags_mbirnAHM_March_2007.ppt | slides]]; Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
XNAT + FreeSurfer/QDEC<br />
Workflow Workbench / Eclipse plug-in <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) [[media:MBIRN-BWH-Environment-2007-03-21.ppt | slides about the BWH environment]] <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8389Mbirn:SpringConference20072007-03-19T19:05:30Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at [http://www.google.com/maps?hl=en&safe=off&q=maggiano%27s+little+italy&near=Boston,+MA&cid=0,0,1768425890215287899&ll=42.351418,-71.068375&spn=0,.02&sa=X&oi=local&ct=image Maggiano's Little Italy] (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8388Mbirn:SpringConference20072007-03-19T18:58:38Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (QDEC: a Freesurfer group-analysis GUI tool) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy, D. Greve, D. Kennedy, M. Mendis, R. Buckner, N.Schmansky, S. Wallace, B. Fischl, G. Hoffman<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis, W. Plesniak<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny, M. Miller, S. Mori, J. Farrell, B. Landman, A. Qui<br />
<br/><br />
Duke: A. Song, J. MacFall, B. Boyd, K. Zhao<br />
<br/> <br />
UCLA: A. Toga, R. Jagadeeswaran<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: J. Ames, S. Potkin, J.Turner, D. Wei, D. Keator, J. Fallon, A. Preda<br />
<br/><br />
BIRN CC: M. James, J. Grethe, V. Astakhov, R. Manansala, N. Jones<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
Other Collaborators: B. Gimi (Children's)<br />
<br/><br />
NIH CIT: M. McAulliffe, E. McCreedy<br/><br />
<br/><br />
Friday’s clinical collaborator round table discussion:<br/> <br />
M. McAulliffe (NDAR)<br/><br />
G. Harris, O. Wu (SPOTRIAS)<br/><br />
P. Wolfe, R. Killany, ++ (Framingham Heart Study)<br/><br />
F. LaLonde (NIMH)<br/></div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8386Mbirn:SpringConference20072007-03-19T16:56:14Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky ('Group Analysis Tool Front<br />
End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8385Mbirn:SpringConference20072007-03-19T16:55:24Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8384Mbirn:SpringConference20072007-03-19T16:54:33Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/21 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8383Mbirn:SpringConference20072007-03-19T16:37:46Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM) <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8382Mbirn:SpringConference20072007-03-19T16:36:36Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00PM)'' <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
''DTI session will begin with 5 minute updates from each participating site'' <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm - Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8381Mbirn:SpringConference20072007-03-19T16:34:23Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
*Lunch (12-1:00)* <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
Specific sessions for the following TBD by discussion on Wednesday's Programmer Day:<br/><br />
Workflows Working Group-demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE Group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Group<br/><br />
Visualization and Analysis Working Group <br/><br />
<br/><br />
A parallel DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) will run throughout Thursday. <br/><br />
*DTI session will begin with 5 minute updates from each participating site* <br/><br />
<br />
''Lunch 12-2PM'' <br/><br />
Operations Committee Lunch 12-1 PM <br/> <br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Opening Remarks - Greg Farber <br/><br />
Opening Remarks II - Bruce Rosen <br/><br />
Overview for each Working Group <br/><br />
Introduction to the BIRN Data Repository - Christine Fennema-Notestine <br/><br />
Introduction of the Clinical Collaborators - Representatives <br/><br />
Roundtable discussion with mBIRN clinical collaborators: National Database for Autism Research (NDAR), Specialized Program of Translational Research in Acute Stroke (SPOTRIAS), Framingham Heart Study, NIMH Pediatric Neuroimaging Group.<br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
Wrap up Session – Discussion of what Morphometry can deliver in the one and <br />
two year timeframes. Incorporation of feedback and needs of the clinical <br />
collaborators. <br/><br />
Action Items <br/><br />
Finish @ 4pm<br />
<br/><br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8380Mbirn:SpringConference20072007-03-19T16:29:50Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]'' <br/><br />
The conference room is on the second floor, room 245, and the phone number <br />
there is 617-525-6224. Once you arrive downstairs call extension 56224 and <br />
someone can come and let you in.<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
*Lunch (12-1:00)* <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
Visualization and Analysis Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy (4 Columbus Ave, Boston, MA<br />
(617) 542-3456; across the street from the hotel) <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Visualization and Analysis Update <br/><br />
Workflows Update <br/><br />
Databases Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8379Mbirn:SpringConference20072007-03-19T16:24:19Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Nick Schmansky (Query Tool Front End to FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
*Lunch (12-1:00)* <br/><br/><br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening (at Radisson) <br/><br />
Cocktail Reception (@5:30 PM) <br/><br />
Site Update Presentations (@6:00PM) <br/><br />
Dinner (@7:00 PM) <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
Visualization and Analysis Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Visualization and Analysis Update <br/><br />
Workflows Update <br/><br />
Databases Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8378Mbirn:SpringConference20072007-03-19T16:21:29Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) ''' ''Note: this session takes place at [http://spl.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street]''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
Visualization and Analysis Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Visualization and Analysis Update <br/><br />
Workflows Update <br/><br />
Databases Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
<br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8217Mbirn:SpringConference20072007-03-10T12:00:56Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at Maggiano's Little Italy (across the street from the hotel).<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
Visualization and Analysis Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Visualization and Analysis Update <br/><br />
Workflows Update <br/><br />
Databases Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8216Mbirn:SpringConference20072007-03-10T11:53:01Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
Visualization and Analysis Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Visualization and Analysis Update <br/><br />
Workflows Update <br/><br />
Databases Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8215Mbirn:SpringConference20072007-03-10T03:34:37Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
Visualization and Analysis Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Visualization and Analysis Update <br/><br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8214Mbirn:SpringConference20072007-03-10T02:56:12Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Morphometry BIRN Overview <br/><br />
Introduction to the BIRN Data Repository <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8213Mbirn:SpringConference20072007-03-10T02:54:19Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 5:00 pm followed by a dinner at 7:00 pm, both are at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
*Morning <br/><br />
Breakfast (7:30-8:30) <br/><br />
Roundtable discussion with mBIRN clinical collaborators: use cases <br />
for the Data Repository <br/><br />
<br/> <br/><br />
<br />
''Lunch (12-1:30PM)'' <br/> <br/><br />
<br />
*Afternoon (1:30-4PM <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8212Mbirn:SpringConference20072007-03-10T02:52:25Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
DTI session will begin with 5 minute updates from each participating site <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
''Morning'' <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
''Afternoon'' <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8211Mbirn:SpringConference20072007-03-10T02:51:53Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
*Morning <br/><br />
Breakfast 7:30-8:30 <br/><br />
Introduction – Bruce Rosen <br/> <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br/><br />
<br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
*DTI session will begin with 5 minute updates from each participating site* <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, Dave Keator,..., includes provenance group) <br/><br />
Upload Working Session <br/><br />
<br />
''Lunch 12-2PM'' <br/><br/><br />
<br />
*Afternoon (2-5PM) <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
XCEDE /Query Atlas groups (includes provenance group)<br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
*Evening <br/><br />
6:30 pm Dinner at Maggiano's Little Italy <br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
''Morning'' <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
''Afternoon'' <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8210Mbirn:SpringConference20072007-03-10T02:49:45Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
*Morning <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
<br />
*Afternoon (1-4PM) <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
''Morning'' <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
''Afternoon'' <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
''Evening'' <br/><br />
dinner <br/><br />
<br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
''Morning'' <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
''Afternoon'' <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8209Mbirn:SpringConference20072007-03-10T02:48:38Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: [http://www.radisson.com/bostonma Radisson Boston]<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
''Morning'' <br/><br />
Breakfast: 8AM <br/><br />
Start: 8:30 AM <br/><br />
Topic 1: Where are we and where are we going? <br/><br />
Introduction / Goals of the Meeting - Randy Gollub <br/><br />
Data Repository Update - Chris Fennema-Notestine <br/><br />
(5 minute presentations + time for discussion/questions)<br/><br />
Portal Update - Jeff Grethe, Mark James <br/><br />
Applications Update: Steve Pieper (Slicer 3); Kevin Teich (FreeSurfer) <br/><br />
Workflows Update: R. Jagadeeswaran (LONI); Shawn Murphy/Mike Mendis (MGH) <br/><br />
Databases Update - Dan Marcus (XNAT) <br/> <br/><br />
<br />
Discussion of the agenda for Wednesday and Thursday <br/><br />
Move to Breakout Groups <br/> <br/><br />
<br />
''Lunch (12-1:00)'' <br/><br/><br />
''Afternoon (1-4PM)'' <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
*Evening* <br/><br />
Cocktail Reception (@5 PM) and Dinner (@7 PM)- Radisson <br/> <br/><br />
<br />
<br />
'''Thursday (3/22)'''<br/><br />
''Morning'' <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
''Afternoon'' <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
''Evening'' <br/><br />
dinner <br/><br />
<br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
''Morning'' <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
''Afternoon'' <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song, B. Boyd, J. MacFall, K. Zhao<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner, Dingying Wei<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:_Meetings_and_Conferences&diff=8208Mbirn: Meetings and Conferences2007-03-10T02:45:18Z<p>Helmer: </p>
<hr />
<div>== Upcoming Meetings ==<br />
<br />
<blockquote><br />
<br />
* '''[[Mbirn:SpringConference2007|Morphometry BIRN 2007 Spring Meeting]]'''<br />
* '''Check [[Main_Page|National Alliance for Medical Image Computing]] Events '''<br />
<br />
</blockquote><br />
<br />
== Past BIRN Meetings ==<br />
<br />
<blockquote><br />
* '''BIRN All Hands Meeting 2006'''[[Mbirn:_AHM_mBIRN_day_2006|here]]<br />
* '''[[Mbirn:SpringConference2006|Morphometry BIRN 2006 Spring Meeting]]'''<br />
* '''[[FBIRN:retreat2006|Function BIRN 2006 Spring Meeting ]]'''<br />
* '''[[Working_Group_Meetings|BIRN Ontology "Boot Camp"]]'''<br />
* '''[[BIRN_Booth_SFN_2005|BIRN Booth SFN 2005]]<br />
* '''[[BIRN_All_Hands_Meeting_2005|BIRN All Hands Meeting 2005]]'''<br />
* [[FBIRN:retreat2005|Function BIRN Spring 2005]]<br />
* '''[[Mbirn:SpringConference2005|Morphometry BIRN Spring 2005]]'''<br />
* '''[[Media:Morph_BIRN_AHM.04.milestones.final.pdf| BIRN AHM 2004: Morphometry BIRN Milestones]]'''<br />
<br />
</blockquote><br />
<br />
<br /> Back to [[Mbirn:Main_Page|Mbirn:Main_Page]]</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8064Mbirn:SpringConference20072007-03-02T13:10:25Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
''Morning'' <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
''Afternoon'' <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
''Evening'' <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
'''Thursday (3/22)'''<br/><br />
''Morning'' <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
''Afternoon'' <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
''Evening'' <br/><br />
dinner <br/><br />
<br/> <br/><br />
<br />
'''Friday (3/23)'''<br/><br />
''Morning'' <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
''Afternoon'' <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8063Mbirn:SpringConference20072007-03-02T13:09:05Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'''Wednesday (3/21) '''<br />
<br />
''Morning'' <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
''Afternoon'' <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
''Evening'' <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
'''Thursday (3/22)'''<br />
''Morning'' <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
''Afternoon'' <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
''Evening'' <br/><br />
dinner <br/><br />
<br/> <br/><br />
<br />
'''Friday (3/23)'''<br />
''Morning'' <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
''Afternoon'' <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:Main_Page&diff=8062Mbirn:Main Page2007-03-02T12:49:59Z<p>Helmer: </p>
<hr />
<div>== '''Welcome to the Morphometry BIRN Wiki!''' ==<br />
<br />
[[Image:NIH_Logo.png|[[Image:NIH_Logo.png|Image:NIH_Logo.png]]]] [[Image:Ncrr_logo.png|[[Image:Ncrr_logo.png|Image:Ncrr_logo.png]]]]<br />
<br/> <br/><br />
'''Note: This is now the historical site of the mBIRN wiki. As of 1/1/07, mBIRN is using the BIRN wiki that can be accessed ''' <br />
'''from the BIRN portal. You will need to have a portal account to access the wiki. ''' <br />
<br/> <br/><br />
'''However, the schedule for the mBIRN All Hands Meeting 2007 is available from this site ''' <br />
'''(link below - Meetings and Conferences) '''<br />
<br/> <br/><br />
''Welcome!'' This system is meant to encourage quick and efficient communication among the participating investigators and the interested users. If you are interested in the BIG picture or need an introduction to the BIRN project please go to our main web page [http://www.nbirn.net Biomedical Informatics Research Network]<br />
<br />
== Morphometry BIRN Activities ==<br />
<br />
'''[[Mbirn:_Meetings_and_Conferences|Meetings and Conferences]]'''<br />
<br />
<br />'''Core Projects'''<br />
<br />
* [[Mbirn:_Core_1_-_MRI_Calibration|Mbirn: Core 1 - MRI Calibration]]<br />
* [[Mbirn:_Core_2_-_Analysis%2C_Visualization_and_Interpretation_Tools|Mbirn: Core 2 - Analysis, Visualization and Interpretation Tools]]<br />
* [[Mbirn:_Core_3_-_Computational_Informatics|Mbirn: Core 3 - Computational Informatics]]<br />
* [[Mbirn:_Clinical_Collaborations|Mbirn: Clinical Collaborations]]<br />
* [[Mbirn:_Hardware_and_Software_Integration_support_from_BIRN_CC|Mbirn: Hardware and Software Integration support from BIRN CC]]<br />
<br />
<br />'''Application Tests'''<br />
<br />
* [[Mbirn:_Multi-site_AD_%28MAD%29_Project|Mbirn: Multi-site AD (MAD) Project]]<br />
* [[Mbirn:_Semi-Automated_Shape_Analysis_%28SASHA%29_Project|Mbirn: Semi-Automated Shape Analysis (SASHA) Project]]<br />
* [[Mbirn:_Multi-site_Imaging_Research_in_the_Analysis_of_Depression_%28MIRIAD%29_Project|Mbirn: Multi-site Imaging Research in the Analysis of Depression (MIRIAD) Project]]<br />
* [[Mbirn:_Efforts_to_Localize_lesions_%28BELL%29_project|Mbirn: Efforts to Localize lesions (BELL) project]]<br />
<br />
<br />'''Morphometry BIRN Dissemination'''<br />
<br />
* [[Mbirn:_Data_Dissemination|Mbirn: Data Dissemination]]<br />
* [[Mbirn:_Software_Tools_Dissemination|Mbirn: Software Tools Dissemination]]<br />
<br />
<br />'''Morphometry BIRN Progress Reports'''<br />
<br />
* [[Mbirn:_Summary_Progress_Reports|Mbirn: Summary Progress Reports]]<br />
* [[Mbirn:_Recent_Publications|Mbirn: Recent Publications]]<br />
<br />
== BIRN General ==<br />
<br />
* [[Data_Sharing_Task_Force|Data Sharing Task Force]]<br />
<br />
== Announcements ==<br />
<br />
* [[Mbirn:_Tools|Mbirn: Tools]]<br />
* [[Grouped_by_Subprojects|Mbirn: Actitivities Grouped by Working Groups]]<br />
* [[Mbirn:_Publications_Issues|Mbirn: Publications Issues]]<br />
* [[Mbirn:_Meetings_and_Conferences|Mbirn: Meetings and Conferences]]<br />
* [[Mbirn:_Bi-weekly_meetings|Mbirn: Bi-weekly meetings]]<br />
* [[Mbirn:_Important_Deadlines|Mbirn: Important Deadlines]]<br />
* [[March_2005:_Updated_goals_and_workplans|Mbirn: Goals and Milestones (updates from March Miami Meeting, 2005)]]<br />
* [[Mbirn:_Bidding_Farewell_to_Jorge|Mbirn: Bidding Farewell to Jorge]]</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:Main_Page&diff=8061Mbirn:Main Page2007-03-02T12:49:35Z<p>Helmer: </p>
<hr />
<div>== '''Welcome to the Morphometry BIRN Wiki!''' ==<br />
<br />
[[Image:NIH_Logo.png|[[Image:NIH_Logo.png|Image:NIH_Logo.png]]]] [[Image:Ncrr_logo.png|[[Image:Ncrr_logo.png|Image:Ncrr_logo.png]]]]<br />
<br/> <br/><br />
'''Note: This is now the historical site of the mBIRN wiki. As of 1/1/07, mBIRN is using the BIRN wiki that can be accessed ''' <br />
'''from the BIRN portal. You will need to have a portal account to access the wiki. ''' <br />
<br/> <br/><br />
'''However, the schedule for the mBIRN All Hands Meeting 2007 is available from this site ''' <br />
'''(link below - Meetings and Conferences) '''<br />
<br />
''Welcome!'' This system is meant to encourage quick and efficient communication among the participating investigators and the interested users. If you are interested in the BIG picture or need an introduction to the BIRN project please go to our main web page [http://www.nbirn.net Biomedical Informatics Research Network]<br />
<br />
== Morphometry BIRN Activities ==<br />
<br />
'''[[Mbirn:_Meetings_and_Conferences|Meetings and Conferences]]'''<br />
<br />
<br />'''Core Projects'''<br />
<br />
* [[Mbirn:_Core_1_-_MRI_Calibration|Mbirn: Core 1 - MRI Calibration]]<br />
* [[Mbirn:_Core_2_-_Analysis%2C_Visualization_and_Interpretation_Tools|Mbirn: Core 2 - Analysis, Visualization and Interpretation Tools]]<br />
* [[Mbirn:_Core_3_-_Computational_Informatics|Mbirn: Core 3 - Computational Informatics]]<br />
* [[Mbirn:_Clinical_Collaborations|Mbirn: Clinical Collaborations]]<br />
* [[Mbirn:_Hardware_and_Software_Integration_support_from_BIRN_CC|Mbirn: Hardware and Software Integration support from BIRN CC]]<br />
<br />
<br />'''Application Tests'''<br />
<br />
* [[Mbirn:_Multi-site_AD_%28MAD%29_Project|Mbirn: Multi-site AD (MAD) Project]]<br />
* [[Mbirn:_Semi-Automated_Shape_Analysis_%28SASHA%29_Project|Mbirn: Semi-Automated Shape Analysis (SASHA) Project]]<br />
* [[Mbirn:_Multi-site_Imaging_Research_in_the_Analysis_of_Depression_%28MIRIAD%29_Project|Mbirn: Multi-site Imaging Research in the Analysis of Depression (MIRIAD) Project]]<br />
* [[Mbirn:_Efforts_to_Localize_lesions_%28BELL%29_project|Mbirn: Efforts to Localize lesions (BELL) project]]<br />
<br />
<br />'''Morphometry BIRN Dissemination'''<br />
<br />
* [[Mbirn:_Data_Dissemination|Mbirn: Data Dissemination]]<br />
* [[Mbirn:_Software_Tools_Dissemination|Mbirn: Software Tools Dissemination]]<br />
<br />
<br />'''Morphometry BIRN Progress Reports'''<br />
<br />
* [[Mbirn:_Summary_Progress_Reports|Mbirn: Summary Progress Reports]]<br />
* [[Mbirn:_Recent_Publications|Mbirn: Recent Publications]]<br />
<br />
== BIRN General ==<br />
<br />
* [[Data_Sharing_Task_Force|Data Sharing Task Force]]<br />
<br />
== Announcements ==<br />
<br />
* [[Mbirn:_Tools|Mbirn: Tools]]<br />
* [[Grouped_by_Subprojects|Mbirn: Actitivities Grouped by Working Groups]]<br />
* [[Mbirn:_Publications_Issues|Mbirn: Publications Issues]]<br />
* [[Mbirn:_Meetings_and_Conferences|Mbirn: Meetings and Conferences]]<br />
* [[Mbirn:_Bi-weekly_meetings|Mbirn: Bi-weekly meetings]]<br />
* [[Mbirn:_Important_Deadlines|Mbirn: Important Deadlines]]<br />
* [[March_2005:_Updated_goals_and_workplans|Mbirn: Goals and Milestones (updates from March Miami Meeting, 2005)]]<br />
* [[Mbirn:_Bidding_Farewell_to_Jorge|Mbirn: Bidding Farewell to Jorge]]</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8048Mbirn:SpringConference20072007-03-01T21:06:05Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'' Wednesday (3/21) ''<br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
== ATTENDEES ==<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8047Mbirn:SpringConference20072007-03-01T21:05:40Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days. Contact <br />
Karl Helmer (helmer@nmr.mgh.harvard.edu) for more information.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'' Wednesday (3/21) ''<br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
1.1 ATTENDEES<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8046Mbirn:SpringConference20072007-03-01T21:05:00Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
There will be a Programmer's Day on 3/20 for those people needing extra working time outside of the two meeting days.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'' Wednesday (3/21) ''<br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
1.1 ATTENDEES<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8045Mbirn:SpringConference20072007-03-01T21:03:41Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
== Sessions for AHM: == <br />
<br />
'' Wednesday (3/21) ''<br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
1.1 ATTENDEES<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8044Mbirn:SpringConference20072007-03-01T21:03:06Z<p>Helmer: </p>
<hr />
<div>== Morphometry BIRN All Hands Meeting - 2007 ==<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
''Sessions for AHM:'' <br />
<br />
'' Wednesday (3/21) ''<br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
1.1 ATTENDEES<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8043Mbirn:SpringConference20072007-03-01T20:53:14Z<p>Helmer: </p>
<hr />
<div>'''Morphometry BIRN All Hands Meeting - 2007'''<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
''Sessions for AHM:'' <br />
<br />
'' Wednesday (3/21) ''<br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
1.1 ATTENDEES<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:SpringConference2007&diff=8042Mbirn:SpringConference20072007-03-01T20:51:06Z<p>Helmer: </p>
<hr />
<div>1 Morphometry BIRN All Hands Meeting - 2007<br />
<br/><br />
Location: Boston, MA<br />
<br/><br />
Date: March 21-23, 2007<br />
<br/><br />
Venue: Radisson Boston<br />
<br/><br />
<br/><br />
Room rates are $159/night, please call the hotel directly at 617-482-1800 and let reservations know that you are with the "mBIRN Spring Meeting 2007" block.<br />
<br/><br />
<br/><br />
We will be kicking off the meeting on 3/21 with a cocktail party social starting at 4:30 pm followed by a dinner at 7:00 pm, at the Radisson.<br/><br />
<br />
There is also a group dinner planned on 3/22 at a nearby restaurant.<br />
<br/><br />
<br/><br />
<br />
1 Sessions for AHM: <br />
<br />
1.1 Wednesday (3/21) <br />
<br />
~~Morning~~ <br/><br />
mBIRN upload tech group (Dan Marcus, Jeff Grethe, Tim O Brien) meets with mBIRN upload group (Randy Gollub, Chris Fennema-Notestine, James MacFall, Brian Boyd) <br/><br />
mBIRN provenance group (Nicole Aucoin, Mike Mendis, Dingying Wei, Dave Keator)<br />
<br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
XCEDE group (Dan Marcus, Jeff Grethe, Tim O'Brien, …, includes provenance group) <br/><br />
mBIRN workflows group (Anthony Kolasny, Tim OBrien, Shawn Murphy, Mike Mendis, Ramil Manansala, Neil Jones) <br/><br />
<br/><br />
~~Evening~~ <br/><br />
Cocktail reception and dinner <br/> <br/><br />
Site Showcase Presentations - contact Karl Helmer (helmer@nmr.mgh.harvard.edu) with presenter's name for each site.<br />
<br />
1.1 Thursday (3/22)<br />
~~Morning~~ <br/><br />
Introduction – Bruce Rosen <br/><br />
DTI Working Session (Susumu Mori, Allen Song, Jonathan Farrell, Bennet Landman, Jim Fallon, Berj Gimi, Anders Dale, Karl Helmer) <br/><br />
Workflows Working Session - demonstrations of the LDDMM and LONI pipelines <br/><br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Database/Application Integration Working Session (Dan Marcus, Steve Pieper, Doug Greve, Tim Olsen) <br/><br />
<br />
~~Afternoon~~ <br/><br />
DTI Working Session <br/><br />
Workflows Working Session <br/><br />
Tentative Slot for the XCEDE /Query Atlas groups<br />
Provenance Working Session <br/><br />
Upload Working Session <br/><br />
Databases Working Session <br/><br />
<br />
~~Evening~~ <br/><br />
dinner <br/><br />
<br/><br />
1.1 Friday (3/23)<br />
~~Morning~~ <br/><br />
Upload – clinical collaborators use cases <br/><br />
<br/><br />
~~Afternoon~~ <br/><br />
Chris Fennema-Notestine – update from Data Repository Director <br/><br />
DTI Update <br/> <br />
Workflows Update <br/><br />
Provenance Update <br/><br />
Upload Update <br/><br />
Wrap up Session – Action Items <br/><br />
Finish @ 4pm<br />
<br />
<br />
<br/><br />
1.1 ATTENDEES<br />
<br/><br />
MGH: B. Rosen, R. Gollub, K. Helmer, S.Murphy<br />
<br/><br />
BWH: N. Aucoin, K. Hayes, S. Pieper, R. Kikinis<br />
<br/><br />
MIT: P.Golland<br />
<br/><br />
WashU: D. Marcus, T.Olsen, M. Ramaratnam, K. Archie<br />
<br/><br />
JHU: T. Brown, J.Hennesey, A. Kolasny<br />
<br/><br />
Duke: A. Song<br />
<br/> <br />
UCLA: A. Toga<br />
<br/><br />
UCSD: A. Dale, C. Fennema-Notestine<br />
<br/><br />
UCI: S. Potkin, J.Turner<br />
<br/><br />
BIRN CC: M. James<br />
<br/><br />
NIH: E.Collier<br />
<br/><br />
NA-MIC: <br />
<br/><br />
Other Collaborators:</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:_Meetings_and_Conferences&diff=8041Mbirn: Meetings and Conferences2007-03-01T20:50:41Z<p>Helmer: </p>
<hr />
<div>== Upcoming Meetings ==<br />
<br />
<blockquote><br />
<br />
* '''BIRN All Hands Meeting 2006'''[[Mbirn:_AHM_mBIRN_day_2006|here]]<br />
* '''Check [[Main_Page|National Alliance for Medical Image Computing]] Events '''<br />
<br />
</blockquote><br />
<br />
== Past BIRN Meetings ==<br />
<br />
<blockquote><br />
<br />
* '''[[Mbirn:SpringConference2007|Morphometry BIRN 2007 Spring Meeting]]'''<br />
* '''[[Mbirn:SpringConference2006|Morphometry BIRN 2006 Spring Meeting]]'''<br />
* '''[[FBIRN:retreat2006|Function BIRN 2006 Spring Meeting ]]'''<br />
* '''[[Working_Group_Meetings|BIRN Ontology "Boot Camp"]]'''<br />
* '''[[BIRN_Booth_SFN_2005|BIRN Booth SFN 2005]]<br />
* '''[[BIRN_All_Hands_Meeting_2005|BIRN All Hands Meeting 2005]]'''<br />
* [[FBIRN:retreat2005|Function BIRN Spring 2005]]<br />
* '''[[Mbirn:SpringConference2005|Morphometry BIRN Spring 2005]]'''<br />
* '''[[Media:Morph_BIRN_AHM.04.milestones.final.pdf| BIRN AHM 2004: Morphometry BIRN Milestones]]'''<br />
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</blockquote><br />
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<br /> Back to [[Mbirn:Main_Page|Mbirn:Main_Page]]</div>Helmerhttps://www.na-mic.org/w/index.php?title=Mbirn:Main_Page&diff=8026Mbirn:Main Page2007-03-01T17:52:38Z<p>Helmer: </p>
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<div>== '''Welcome to the Morphometry BIRN Wiki!''' ==<br />
<br />
[[Image:NIH_Logo.png|[[Image:NIH_Logo.png|Image:NIH_Logo.png]]]] [[Image:Ncrr_logo.png|[[Image:Ncrr_logo.png|Image:Ncrr_logo.png]]]]<br />
<br/> <br/><br />
'''Note: This is now the historical site of the mBIRN wiki. As of 1/1/07, mBIRN is using the BIRN wiki that can be accessed ''' <br />
'''from the BIRN portal. You will need to have a portal account to access the wiki. ''' <br/> <br/><br />
<br />
''Welcome!'' This system is meant to encourage quick and efficient communication among the participating investigators and the interested users. If you are interested in the BIG picture or need an introduction to the BIRN project please go to our main web page [http://www.nbirn.net Biomedical Informatics Research Network]<br />
<br />
== Morphometry BIRN Activities ==<br />
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'''[[Mbirn:_Meetings_and_Conferences|Meetings and Conferences]]'''<br />
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<br />'''Core Projects'''<br />
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* [[Mbirn:_Core_1_-_MRI_Calibration|Mbirn: Core 1 - MRI Calibration]]<br />
* [[Mbirn:_Core_2_-_Analysis%2C_Visualization_and_Interpretation_Tools|Mbirn: Core 2 - Analysis, Visualization and Interpretation Tools]]<br />
* [[Mbirn:_Core_3_-_Computational_Informatics|Mbirn: Core 3 - Computational Informatics]]<br />
* [[Mbirn:_Clinical_Collaborations|Mbirn: Clinical Collaborations]]<br />
* [[Mbirn:_Hardware_and_Software_Integration_support_from_BIRN_CC|Mbirn: Hardware and Software Integration support from BIRN CC]]<br />
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<br />'''Application Tests'''<br />
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* [[Mbirn:_Multi-site_AD_%28MAD%29_Project|Mbirn: Multi-site AD (MAD) Project]]<br />
* [[Mbirn:_Semi-Automated_Shape_Analysis_%28SASHA%29_Project|Mbirn: Semi-Automated Shape Analysis (SASHA) Project]]<br />
* [[Mbirn:_Multi-site_Imaging_Research_in_the_Analysis_of_Depression_%28MIRIAD%29_Project|Mbirn: Multi-site Imaging Research in the Analysis of Depression (MIRIAD) Project]]<br />
* [[Mbirn:_Efforts_to_Localize_lesions_%28BELL%29_project|Mbirn: Efforts to Localize lesions (BELL) project]]<br />
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<br />'''Morphometry BIRN Dissemination'''<br />
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* [[Mbirn:_Data_Dissemination|Mbirn: Data Dissemination]]<br />
* [[Mbirn:_Software_Tools_Dissemination|Mbirn: Software Tools Dissemination]]<br />
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<br />'''Morphometry BIRN Progress Reports'''<br />
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* [[Mbirn:_Summary_Progress_Reports|Mbirn: Summary Progress Reports]]<br />
* [[Mbirn:_Recent_Publications|Mbirn: Recent Publications]]<br />
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== BIRN General ==<br />
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* [[Data_Sharing_Task_Force|Data Sharing Task Force]]<br />
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== Announcements ==<br />
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* [[Mbirn:_Tools|Mbirn: Tools]]<br />
* [[Grouped_by_Subprojects|Mbirn: Actitivities Grouped by Working Groups]]<br />
* [[Mbirn:_Publications_Issues|Mbirn: Publications Issues]]<br />
* [[Mbirn:_Meetings_and_Conferences|Mbirn: Meetings and Conferences]]<br />
* [[Mbirn:_Bi-weekly_meetings|Mbirn: Bi-weekly meetings]]<br />
* [[Mbirn:_Important_Deadlines|Mbirn: Important Deadlines]]<br />
* [[March_2005:_Updated_goals_and_workplans|Mbirn: Goals and Milestones (updates from March Miami Meeting, 2005)]]<br />
* [[Mbirn:_Bidding_Farewell_to_Jorge|Mbirn: Bidding Farewell to Jorge]]</div>Helmer