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SDIWG:Meeting Minutes 20080516

2008-05-17T01:04:36Z

Jeanetteschmidt: /* Minutes */

==NCBC Joint Working Group Meeting==

[[SDIWG:Software_and_Data_Integration_Working_Group|Top page of SDIWG web site]]

===Notes===
''Friday May 16, 2008: 2:30-3:30 PM EST'' 
''Please contact Peter Lyster for information [mailto:lysterp@mail.nih.gov Peter Lyster]'' 
''[[SDIWG:Software_Engineering_Body_of_Knowledge_Across_NCBC_Biocomputing_Centers | SDIWG Meetings Page]]'' 
Save the date for the 2008 NCBC AHM: Friday August 13-15, 2008

===Tcon Agenda===

*Roll Call/Note-taker (Joy Ku) (5 min)
*Minutes from most recent SDIWG tcon [[SDIWG:Meeting_Minutes_20080222|Feb. 22, 2008]] (5 min)
*NCBC All Hands Meeting, August 13-15, 2008. Logistics, Planning & Brainstorming discussion (Peter, Karin, All)
*Status check on '''three working groups''':
** [[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies|Biositemaps Resourceome]]
** [[SDIWG:_NCBC_Scientific_Ontologies|Scientific Ontologies]]
** [http://www.ncbcs.org/dbp_interactions.html NCBC Driving Biological Projects Interactions and Impact]
* State of [http://www.biositemap.org Biositemaps] and [[Media:Biositemaps_white_paper_v4.0.doc | Biositemaps white paper v3.2]] (Peter, Ivo, Daniel) and [http://na-mic.org/Wiki/index.php/SDIWG:Meeting_Minutes_20080416 Biomedical Resource Ontology (BRO) ]
* Programmatic and translational-research interactions with other initiatives (CTSA, BIRN, and so on)
* Overview of plan for next 2 months (Peter)
* State of the Roadmap Initiative
* Other Progress reports
* Next 2 meeting date (2008 NCBC AHM) - we may need a prep-meeting in early August!
* Questions/Information Sharing

 

===Minutes===
* '''Note taker''': [Suggested order of note takers for future meetings: '''Joy Ku (this one)'''; Schroeder; Floratos; Rubin; Jags, Dinov, Murphy]
* Review of [[SDIWG:Meeting_Minutes_20080222|Feb 22, 2008 Minutes]]
* Attendees: TBD
* TBD ...

===Action Items===
* TBD.

===Appendix: Biositemaps white paper===
The [http://www.biositemap.org biositemaps] [[Media:Biositemaps_white_paper_v3.2.doc | Biositemaps white paper v3.2]] presents description of prototype for distributed architecture to address
* locating,
* querying,
* composing or combining, and
* mining software tools and information resources on the Internet.

Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind. The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/.

*The Biomedical Resource Ontology (BRO) (see [[Media:BRO_Requirements.doc | BRO Requirements document]]) is an extensible terminology for online electronic resources, intended to be an enabling technology for tools which improve query and access to online resources.
*Further postings will be made at the NCBC portal at http://www.ncbcs.org/biositemaps/
*Status of the NCBC iTools, which is uses the biositemaps. http://iTools.loni.ucla.edu

SDIWG:Meeting Minutes 20080516

2008-05-17T01:03:36Z

Jeanetteschmidt: /* Tcon Agenda */

==NCBC Joint Working Group Meeting==

[[SDIWG:Software_and_Data_Integration_Working_Group|Top page of SDIWG web site]]

===Notes===
''Friday May 16, 2008: 2:30-3:30 PM EST'' 
''Please contact Peter Lyster for information [mailto:lysterp@mail.nih.gov Peter Lyster]'' 
''[[SDIWG:Software_Engineering_Body_of_Knowledge_Across_NCBC_Biocomputing_Centers | SDIWG Meetings Page]]'' 
Save the date for the 2008 NCBC AHM: Friday August 13-15, 2008

===Tcon Agenda===

*Roll Call/Note-taker (Joy Ku) (5 min)
*Minutes from most recent SDIWG tcon [[SDIWG:Meeting_Minutes_20080222|Feb. 22, 2008]] (5 min)
*NCBC All Hands Meeting, August 13-15, 2008. Logistics, Planning & Brainstorming discussion (Peter, Karin, All)
*Status check on '''three working groups''':
** [[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies|Biositemaps Resourceome]]
** [[SDIWG:_NCBC_Scientific_Ontologies|Scientific Ontologies]]
** [http://www.ncbcs.org/dbp_interactions.html NCBC Driving Biological Projects Interactions and Impact]
* State of [http://www.biositemap.org Biositemaps] and [[Media:Biositemaps_white_paper_v4.0.doc | Biositemaps white paper v3.2]] (Peter, Ivo, Daniel) and [http://na-mic.org/Wiki/index.php/SDIWG:Meeting_Minutes_20080416 Biomedical Resource Ontology (BRO) ]
* Programmatic and translational-research interactions with other initiatives (CTSA, BIRN, and so on)
* Overview of plan for next 2 months (Peter)
* State of the Roadmap Initiative
* Other Progress reports
* Next 2 meeting date (2008 NCBC AHM) - we may need a prep-meeting in early August!
* Questions/Information Sharing

 

===Minutes===
* '''Note taker''': [Suggested order of note takers for future meetings: '''Schmidt (this one)'''; Schroeder; Floratos; Rubin; Jags, Dinov, Murphy]
* Review of [[SDIWG:Meeting_Minutes_20080222|Feb 22, 2008 Minutes]]
* Attendees: TBD
* TBD ...

===Action Items===
* TBD.

===Appendix: Biositemaps white paper===
The [http://www.biositemap.org biositemaps] [[Media:Biositemaps_white_paper_v3.2.doc | Biositemaps white paper v3.2]] presents description of prototype for distributed architecture to address
* locating,
* querying,
* composing or combining, and
* mining software tools and information resources on the Internet.

Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind. The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/.

*The Biomedical Resource Ontology (BRO) (see [[Media:BRO_Requirements.doc | BRO Requirements document]]) is an extensible terminology for online electronic resources, intended to be an enabling technology for tools which improve query and access to online resources.
*Further postings will be made at the NCBC portal at http://www.ncbcs.org/biositemaps/
*Status of the NCBC iTools, which is uses the biositemaps. http://iTools.loni.ucla.edu