NAMIC Wiki - User contributions [en]

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-07-01T21:54:06Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-07-01T21:51:41Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-07-01T21:46:54Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-07-01T21:32:13Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-30T17:33:46Z

Jforbes:

__NOTOC__
==Cardiac Agatston Score Module Tutorial==

<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
Image:CardiacAgatstonMeasuresModuleScreenshot.jpg‎|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
Image:CardiacAgatstonSlicerExtension.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson, University of Iowa

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries in order to calculate the Agatston score (a measurement used to determine coronary artery disease and treatment).

==Material for the Slicer 4.3.1 Agatston Score Module, Project Week Summer 2014==

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
| All tests passed
|-
|}

Events:TutorialContestJune2014

2014-06-30T17:24:52Z

Jforbes:

Congratulations to the winner of the Summer 2014 NA-MIC Tutorial Contest !
*[http://wiki.na-mic.org/Wiki/index.php/CardiacAgatstonScoring_TutorialContestSummer2014 Cardiac Agatston Scoring Slicer Module]
*Authors: '''Jessica Forbes, Hans Jonhson, Iowa City, Iowa

'''$250 Prize sponsored by Kitware, Inc (many thanks!)'''

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries in order to calculate the Agatston score (a measurement used to determine coronary artery disease and treatment).

[[File:CardiacAgatstonMeasuresModuleScreenshot.jpg‎ |left |300px ]]
[[File:CardiacAgatstonSlicerExtension.png |left |390px ]]

Events:TutorialContestJune2014

2014-06-30T17:15:17Z

Jforbes:

Congratulations to the winner of the Summer 2014 NA-MIC Tutorial Contest !
[[File:CardiacAgatstonMeasuresModuleScreenshot.jpg‎ |right |300px ]]
*[http://wiki.na-mic.org/Wiki/index.php/CardiacAgatstonScoring_TutorialContestSummer2014 Cardiac Agatston Scoring Slicer Module]
*Authors: '''Jessica Forbes, Hans Jonhson, Iowa City, Iowa

'''$250 Prize sponsored by Kitware, Inc (many thanks!)'''

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries in order to calculate the Agatston score (a measurement used to determine coronary artery disease and treatment).

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-30T17:11:00Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

[[File:CardiacAgatstonMeasuresModuleScreenshot.jpg‎ ]]

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
| All tests passed
|-
|}

2014 Summer Prioject Week:AgatstonScoring

2014-06-27T11:48:19Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
Image:CardiacAgatstonMeasuresModuleScreenshot.jpg‎|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
Image:CardiacAgatstonSlicerExtension.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson, University of Iowa

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries in order to calculate the Agatston score (a measurement used to determine coronary artery disease and treatment).

'''Material for the Slicer 4.3.1 Agatston Score Module:'''

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Segment calcium plaques
* Calculate a calcium score and label statistics
* Complete tutorial

</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* Threshold cardiac CT using minimum intensity threshold
* Use SimpleITK to calculate Agatston scores and label statists
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* Added the module as an extension to the Extension Manager in Slicer builds after 06-25-14
* Mostly finished the extension tutorial
* Presented tutorial in the tutorial contest
</div>
</div>

2014 Summer Prioject Week:AgatstonScoring

2014-06-27T11:47:31Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
Image:CardiacAgatstonMeasuresModuleScreenshot.jpg‎|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
Image:CardiacAgatstonSlicerExtension.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson, University of Iowa

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries in order to calculate the Agatston score (a measurement used to determine coronary artery disease and treatment).

'''Material for the Slicer 4.3.1 Agatston Score Module:'''

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Segment calcium plaques
* Calculate a calcium score and label statistics
* Complete tutorial

</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* Threshold cardiac CT using minimum intensity threshold
* Calculate Agatston scores and label statists
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* Added the module as an extension to the Extension Manager in Slicer builds after 06-25-14
* Mostly finished the extension tutorial
* Presented tutorial in the tutorial contest
</div>
</div>

2014 Summer Prioject Week:AgatstonScoring

2014-06-27T11:42:22Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
Image:CardiacAgatstonMeasuresModuleScreenshot.jpg‎|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
Image:CardiacAgatstonSlicerExtension.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Extension]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries to calculate the Agatston score.

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Segment calcium plaques
* Calculate a calcium score and label statistics

</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* Threshold cardiac CT using minimum intensity threshold
* Calculate Agatston scores and label statists
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* Added the module as an extension to the Extension Manager in Slicer builds after 06-25-14
* Mostly finished the extension tutorial
* Presented tutorial in the tutorial contest
</div>
</div>

File:CardiacAgatstonSlicerExtension.png

2014-06-27T11:33:34Z

Jforbes:

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-25T20:22:27Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

[[File:CardiacAgatstonMeasuresModuleScreenshot.jpg‎ ]]

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
| All tests passed
|-
|}

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-06-25T20:19:20Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-24T18:07:26Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

[[File:CardiacAgatstonMeasuresModuleScreenshot.jpg‎ ]]

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[CardiacAgatstonMeasuresPythonModule.zip]]

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
| All tests passed
|-
|}

File:CardiacAgatstonMeasuresModuleScreenshot.jpg

2014-06-24T18:05:53Z

Jforbes:

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T21:48:59Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[CardiacAgatstonMeasuresPythonModule.zip]]

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
| All tests passed
|-
|}

File:CardiacAgatstonMeasuresPythonModule.zip

2014-06-23T21:48:12Z

Jforbes: This zip file contains the Python file for the Cardiac Agatston Measures Module

This zip file contains the Python file for the Cardiac Agatston Measures Module

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-06-23T21:42:32Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-06-23T21:39:52Z

Jforbes: uploaded a new version of "File:TutorialContest CardiacAgatstonScoring 2014.pdf"

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T21:38:22Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
| All tests passed
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
| All tests passed
|-
|}

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T21:37:02Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || 2014-06-19 || Jessica Forbes
|
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| 2014-06-23 || Jessica Forbes
|
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || 2014-06-20 || Jessica Forbes
|
|-
|}

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T21:35:30Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || 4.3.1-2014-06-05 || ||
|
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || 4.3.1-2014-06-05|| ||
|
|-
| Cardiac Agatston Measures || Linux 64 bit ||4.3.1-2014-06-05 || ||
|
|-
|}

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T19:27:03Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

[[File:TutorialContest_CardiacAgatstonScoring_2014.pdf‎]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| Cardiac Agatston Measures || Mac OS || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 32 bit || || ||
|
|-
| Cardiac Agatston Measures || Windows 7 64 bit || || ||
|
|-
| Cardiac Agatston Measures || Linux 64 bit || || ||
|
|-
|}

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T19:25:52Z

Jforbes:

File:TutorialContest CardiacAgatstonScoring 2014.pdf

2014-06-23T19:24:50Z

Jforbes:

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T19:11:31Z

Jforbes:

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

[[File:CardiacAgatstonMeasures TutorialContestSummer2014.zip]]

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| || Mac OS || || ||
|
|-
| || Windows 7 32 bit || || ||
|
|-
| || Windows 7 64 bit || || ||
|
|-
| || Linux 64 bit || || ||
|
|-
|}

2014 Summer Prioject Week:AgatstonScoring

2014-06-23T17:40:13Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries to calculate the Agatston score.

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Segment calcium plaques
* Calculate a calcium score and label statistics

</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* Threshold cardiac CT using minimum intensity threshold
* Calculate Agatston scores and label statists
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

2014 Summer Prioject Week:AgatstonScoring

2014-06-23T17:38:44Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries to calculate the Agatston score.

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Segment calcium plaques
* Calculate a calcium score and label statistics

</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

2014 Summer Prioject Week:AgatstonScoring

2014-06-23T17:37:08Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
Image:CardiacAgatstonModuleIamge.png|[[2014_Summer_Project_Week#Projects|Cardiac Agatston Scoring Module]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries to calculate the Agatston score.

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

File:CardiacAgatstonModuleIamge.png

2014-06-23T17:32:47Z

Jforbes:

2014 Summer Prioject Week:AgatstonScoring

2014-06-23T17:30:28Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson

==Project Description==
A semi-automated method to segment and identify calcium plaques in coronary arteries to calculate the Agatston score.

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

2014 Summer Prioject Week:AgatstonScoring

2014-06-23T17:29:07Z

Jforbes:

__NOTOC__
<gallery>
Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
</gallery>

==Key Investigators==
Jessica Forbes,
Hans Johnson

==Project Description==
<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

CardiacAgatstonScoring TutorialContestSummer2014

2014-06-23T16:58:13Z

Jforbes: Created page with '__NOTOC__ ===Cardiac Agatston Score Module Tutorial=== Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014: <table> {| class="wik…'

__NOTOC__
===Cardiac Agatston Score Module Tutorial===

Material for the Slicer 4.3.1 Agatston Score Module, University of Iowa, Project Week Summer 2014:

<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
|-
|'''Tutorial Name'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Author''' ||'''Test results (Mantis Links if tests failed)'''
|-
| || Mac OS || || ||
|
|-
| || Windows 7 32 bit || || ||
|
|-
| || Windows 7 64 bit || || ||
|
|-
| || Linux 64 bit || || ||
|
|-
|}

2014 Tutorial Contest

2014-06-23T16:44:04Z

Jforbes:

'''NA-MIC Tutorial Contest, Thursday June 26, 9-10:30 am'''

[[2014_Summer_Project_Week#Agenda|Back to Summer project week Agenda]]

[http://www.slicer.org Slicer4] is used to perform meaningful research tasks. As part of the NA-MIC Training Core activities we are building a curated portfolio of tutorials for the basic functions and specialized functionality available in Slicer.

The primary purpose of the Summer 2014 tutorial contest is to enrich the training materials that are available to end-users and developers using 3D Slicer and the NA-MIC kit. We believe participants will be motivated to join this event to enhance the dissemination of their own algorithms that they have incorporated into the Slicer4 platform and/or to enhance training of Slicer4 functionality for their own laboratory groups.

[http://wiki.na-mic.org/Wiki/index.php/2013_Tutorial_Contest 2013 Summer Tutorial 2013 Contest page]

There will be three categories:
*Category 0: '''EXTENSION TUTORIAL''' <br> In this category, the tutorial will teach a user how to use an Extension of Slicer.
*Category 1: '''END TO END SOLUTION TUTORIAL''' <br> In this category, the tutorial will teach a user how to solve a particular clinical problem using the NA-MIC Kit. <br> Example: [http://www.slicer.org/slicerWiki/images/f/f1/NeurosurgicalPlanning_SoniaPujol.pdf White Matter Exploration for Neurosurgical Planning]
*Category 2: '''ALGORITHM TUTORIAL:''' In this category the tutorial will teach a user how to make an algorithm work on their data.<br> Examples: [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf Quantitative Imaging tutorial]<br>
*Category 3: '''METHODOLOGY TUTORIAL'''. Application-level tutorials for users and developers.<br> Examples:[[Slicer3:Fiducials_TutorialContestSummer2010 | '''Fiducials''']]

Entries in each category require the following material:
* scientific background and application motivation
* step-by-step instructions
* anonymized sample dataset

=Rules=

The [[Summer2014_Tutorial_Contest | evaluation criteria]] for the 2014 tutorial contest are below:
*Tutorial must be based on the Slicer nightly build of June 2,2014:
Windows:
*[http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&name=Slicer-4.3.1-2014-06-02-win-amd64.exe&checksum=f464d190dda72957d1ab7f43b58843e2 Slicer4.4.2014-06.03]
Mac:
*[http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&name=Slicer-4.3.1-2014-06-02-macosx-amd64.dmg&checksum=b5c99307995cbb1292d1789a4cf6c7a9 Slicer4.4.2014-06.03]
Linux:
*[http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&name=Slicer-4.3.1-2014-06-02-linux-amd64.tar.gz&checksum=eebf24ed14aaf46ccd0f47311e96f1fe Slicer4.4.2014-06.03]

*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
Example of self-tests can be found in the RSNA2012Quant module of Slicer4.3.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2014.ppt‎ | Summer 2014 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NA-MIC Training Core in advance to do the multi-platform testing.

NOTE: If you plan on sending the DTI data, we are currently experiencing a [http://na-mic.org/Mantis/view.php?id=3723 bug] that is being worked on. Please refer to these useful debugging hints:
*Load DTI and get bad display as shown in bug report
*Go to volumes module
*Select perpendicular diffusivity mode (possible others work too)
*Switch back to Color Orientation and display is working
*FA now works as well.

=Submission Dead-line and Presentation=

'''<span style="background-color: pink"> Submission dead-line: Monday June 23, 2014'''</span>
* '''Submission process''': to enter the contest, please follow the 5 steps below:
**1. Create a wiki page for your tutorial on the NA-MIC wiki.
**2. Upload your slides and tutorial dataset. Your tutorial and data must be named as 'TutorialName_TutorialContestSummer2014.pdf' and 'TutorialData_TutorialContestSummer2014.zip'
**3. Add a link to the uploaded tutorial and datasets on your tutorial page.
**4. Copy the template of the [http://wiki.na-mic.org/Wiki/index.php/Training:Summer_2014_Contest_Table Summer 2014 test table ] on your tutorial page, and enter the results of your cross-platform testing (Mac, Windows XP &7, Linux 64, Linux 32).
**5. Once you have completed step 1-4, add a link to your tutorial page in the list below and send a notification email to Sonia Pujol (spujol at bwh.harvard.edu) to receive a confirmation of your submission.

* '''Presentation at the NA-MIC Project week''': Brief highlights of tutorials will be presented by the authors at the Summer 2014 Project Week. Each presentation should be 5-minute summary of the submission.

*Tutorial contest entries
#[http://wiki.na-mic.org/Wiki/index.php/CMRToolkitLAWorkflow_TutorialContestSummer2014 Cardiac MRI Toolkit LA Segmentation Workflow. Salma Bengali, Josh Cates, SCI, Utah]
#[http://wiki.na-mic.org/Wiki/index.php/CardiacAgatstonScoring_TutorialContestSummer2014 Cardiac Agatston Scoring Slicer Module. Jessica Forbes, Hans Johnson, Iowa City, Iowa]

Contest judges:
*Randy Gollby, MD, PhD, Massachusetts General Hospital, Harvard Medical School
*Greg Sharp, PhD, Massachusetts General Hospital, Harvard Medical School
*Sidong Liu, MSc, Brigham and Women's Hospital, Harvard Medical School - University of Sydney
*Sonia Pujol, PhD, Brigham and Women's Hospital, Harvard Medical School

File:CardiacAgatstonMeasures TutorialContestSummer2014.zip

2014-06-20T21:50:00Z

Jforbes: CardiacAgatstonMeasures_TutorialContestSummer2014.zip is the test image used in the Slicer module CardiacAgatstonMeasures. CardiacAgatstonMeasuresLUT.ctbl is a lookup table used in the Slicer module CardiacAgatstonMeasures.

CardiacAgatstonMeasures_TutorialContestSummer2014.zip is the test image used in the Slicer module CardiacAgatstonMeasures.
CardiacAgatstonMeasuresLUT.ctbl is a lookup table used in the Slicer module CardiacAgatstonMeasures.