https://www.na-mic.org/w/api.php?action=feedcontributions&feedformat=atom&user=JoostJMNAMIC Wiki - User contributions [en]2026-04-15T10:14:05ZUser contributionsMediaWiki 1.33.0https://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/PyRadiomics&diff=948772017 Winter Project Week/PyRadiomics2017-01-12T18:40:09Z<p>JoostJM: /* Project Description */</p>
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<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
Image:RadiomicsWorkflow.jpg<br />
Image:PyRadiomics_structure.jpg<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
<br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
* Joost van Griethuysen<br />
* Hugo Aerts<br />
* Steve Pieper<br />
* Jean-Christophe Fillion-Robin<br />
* Andrey Fedorov<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
* Introduce PyRadiomics to the community<br />
|<br />
<!-- Approach and Plan bullet points --><br />
* Present, meet collaborators...<br />
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI<br />
* Discuss issues related to enhancing performance using C code<br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week --><br />
* Introduced PyRadiomics to the community<br />
* There are still some issues with the packaging of the extension, SlicerRadiomics. Numpy issue is resolved, PyRadiomics works with numpy 1.9.2, adjusted minimum requirements. Once these issues are resolved, it will be made publicly available in the [http://github.com/Radiomics Github Radiomics Organisation].<br />
* C code performance enhancement is written, but is still causing some issues during compilation. Switch setup to use skbuild and cmake. Latest (offline) tests work with setup.py develop and setup.py test.<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
* [https://Github.com/Radiomics/pyradiomics GitHub Repository]<br />
* [http://pyradiomics.readthedocs.io Documentation]</div>JoostJMhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/PyRadiomics&diff=948732017 Winter Project Week/PyRadiomics2017-01-12T18:38:09Z<p>JoostJM: /* Background and References */</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
Image:RadiomicsWorkflow.jpg<br />
Image:PyRadiomics_structure.jpg<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
<br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
* Joost van Griethuysen<br />
* Hugo Aerts<br />
* Steve Pieper<br />
* Jean-Christophe Fillion-Robin<br />
* Andrey Fedorov<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
* Introduce PyRadiomics to the community<br />
|<br />
<!-- Approach and Plan bullet points --><br />
* Present, meet collaborators...<br />
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI<br />
* Discuss issues related to enhancing performance using C code<br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week --><br />
* Introduced PyRadiomics to the community<br />
* There are still some issues with the packaging of the extension, SlicerRadiomics. Numpy issue is resolved, PyRadiomics works with numpy 1.9.2, adjusted minimum requirements<br />
* C code performance enhancement is written, but is still causing some issues during compilation. Switch setup to use skbuild and cmake. Latest (offline) tests work with setup.py develop and setup.py test.<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
* [https://Github.com/Radiomics/pyradiomics GitHub Repository]<br />
* [http://pyradiomics.readthedocs.io Documentation]</div>JoostJMhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/PyRadiomics&diff=948712017 Winter Project Week/PyRadiomics2017-01-12T18:37:33Z<p>JoostJM: /* Background and References */</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
Image:RadiomicsWorkflow.jpg<br />
Image:PyRadiomics_structure.jpg<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
<br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
* Joost van Griethuysen<br />
* Hugo Aerts<br />
* Steve Pieper<br />
* Jean-Christophe Fillion-Robin<br />
* Andrey Fedorov<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
* Introduce PyRadiomics to the community<br />
|<br />
<!-- Approach and Plan bullet points --><br />
* Present, meet collaborators...<br />
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI<br />
* Discuss issues related to enhancing performance using C code<br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week --><br />
* Introduced PyRadiomics to the community<br />
* There are still some issues with the packaging of the extension, SlicerRadiomics. Numpy issue is resolved, PyRadiomics works with numpy 1.9.2, adjusted minimum requirements<br />
* C code performance enhancement is written, but is still causing some issues during compilation. Switch setup to use skbuild and cmake. Latest (offline) tests work with setup.py develop and setup.py test.<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
* [https://Github.com/Radiomics/pyradiomics GitHub Repository]<br />
* [pyradiomics.readthedocs.io Documentation]</div>JoostJMhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/PyRadiomics&diff=948682017 Winter Project Week/PyRadiomics2017-01-12T18:35:40Z<p>JoostJM: /* Project Description */</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
Image:RadiomicsWorkflow.jpg<br />
Image:PyRadiomics_structure.jpg<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
<br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
* Joost van Griethuysen<br />
* Hugo Aerts<br />
* Steve Pieper<br />
* Jean-Christophe Fillion-Robin<br />
* Andrey Fedorov<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
* Introduce PyRadiomics to the community<br />
|<br />
<!-- Approach and Plan bullet points --><br />
* Present, meet collaborators...<br />
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI<br />
* Discuss issues related to enhancing performance using C code<br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week --><br />
* Introduced PyRadiomics to the community<br />
* There are still some issues with the packaging of the extension, SlicerRadiomics. Numpy issue is resolved, PyRadiomics works with numpy 1.9.2, adjusted minimum requirements<br />
* C code performance enhancement is written, but is still causing some issues during compilation. Switch setup to use skbuild and cmake. Latest (offline) tests work with setup.py develop and setup.py test.<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --></div>JoostJMhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/PyRadiomics&diff=948642017 Winter Project Week/PyRadiomics2017-01-12T18:29:36Z<p>JoostJM: Added images of the structure and location of the toolbox in the Radiomics Workflow</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
Image:RadiomicsWorkflow.jpg<br />
Image:PyRadiomics_structure.jpg<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
<br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
* Joost van Griethuysen<br />
* Hugo Aerts<br />
* Steve Pieper<br />
* Jean-Christophe Fillion-Robin<br />
* Andrey Fedorov<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
* Introduce PyRadiomics to the community<br />
|<br />
<!-- Approach and Plan bullet points --><br />
* Present, meet collaborators...<br />
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI<br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week --><br />
*<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --></div>JoostJMhttps://www.na-mic.org/w/index.php?title=File:PyRadiomics_structure.jpg&diff=94863File:PyRadiomics structure.jpg2017-01-12T18:27:20Z<p>JoostJM: </p>
<hr />
<div></div>JoostJMhttps://www.na-mic.org/w/index.php?title=File:RadiomicsWorkflow.jpg&diff=94862File:RadiomicsWorkflow.jpg2017-01-12T18:26:47Z<p>JoostJM: </p>
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<div></div>JoostJM