NAMIC Wiki - User contributions [en]

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-25T09:25:35Z

PU012: /* Project Description */

==Key Investigators==
* Prashin Unadkat, BWH/HMS
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite/Humboldt University
* Christian Hansen, Otto-von-Guericke University Magdeburg

==Project Description==

Document, understand, and improve visualization of functional mapping data for intraoperative use

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Document and refine workflows for function guided brain tumor resection in AMIGO
* Understand visualization conventions of functional mapping data for presurgical planning and intraoperative navigation
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* 5 year evaluation of Patient cases operated in AMIGO
* Analyzed and summarized current workflow patterns in AMIGO
* Review the literature regarding current practices of Intra-operative Imaging
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* Concept development: refinement of training for surgical data acquisition and usage in AMIGO
* Planning of user study for screen assignment of intraoperative data visualization
* Outline of follow-up study for 3D->2D surgical risk map visualization
</div>
</div>

[[File:Iplan_sample.png|200px|thumb|left|Iplan]]
[[File:OR_navigation.png|200px|thumb|left|OR Navigation System - Brainlab]]

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-25T09:22:33Z

PU012: /* Project Description */

==Key Investigators==
* Prashin Unadkat, BWH/HMS
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite/Humboldt University
* Christian Hansen, Otto-von-Guericke University Magdeburg

==Project Description==

Document, understand, and improve visualization of functional mapping data for intraoperative use

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Document and refine workflows for function guided brain tumor resection in AMIGO
* Understand visualization conventions of functional mapping data for presurgical planning and intraoperative navigation
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* 5 year evaluation of Patient cases operated in AMIGO
* Analyzed and summarized current workflow patterns in AMIGO
* Review the literature regarding current practices of Intra-operative Imaging
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* concept development: refinement of training for surgical data acquisition and usage in AMIGO
* planning of user study for screen assignment of intraoperative data visualization
* outline of follow-up study for 3D->2D surgical risk map visualization
</div>
</div>

[[File:Iplan_sample.png|200px|thumb|left|Iplan]]
[[File:OR_navigation.png|200px|thumb|left|OR Navigation System - Brainlab]]

File:OR navigation.png

2016-06-25T09:20:21Z

PU012:

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-25T09:16:39Z

PU012: /* Project Description */

==Key Investigators==
* Prashin Unadkat, BWH/HMS
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite/Humboldt University
* Christian Hansen, Otto-von-Guericke University Magdeburg

==Project Description==

Document, understand, and improve visualization of functional mapping data for intraoperative use

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Document and refine workflows for function guided brain tumor resection in AMIGO
* Understand visualization conventions of functional mapping data for presurgical planning and intraoperative navigation
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* 5 year evaluation of Patient cases operated in AMIGO
* Analyzed and summarized current workflow patterns in AMIGO
* Review the literature regarding current practices of Intra-operative Imaging
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* concept development: refinement of training for surgical data acquisition and usage in AMIGO
* planning of user study for screen assignment of intraoperative data visualization
* outline of follow-up study for 3D->2D surgical risk map visualization
</div>
</div>

[[File:Iplan_sample.png|200px|thumb|left|Iplan]]

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-25T09:06:09Z

PU012: /* Project Description */

==Key Investigators==
* Prashin Unadkat, BWH/HMS
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite/Humboldt University
* Christian Hansen, Otto-von-Guericke University Magdeburg

==Project Description==

Document, understand, refine and evaluate technology assisted workflows for various neurosurgical procedures in AMIGO compared to standard ORs and other hybrid ORs

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Document and refine workflows for various procedures in AMIGO.
* Also, define meaningful indications for image-guided surgical treatment in AMIGO as opposed to standard ORs
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* 5 year evaluation of Patient cases operated in AMIGO
* Analyzed and summarized current workflow patterns in AMIGO
* Reviewed the literature regarding current practices of Intra-operative Imaging
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* To be discussed at Project Week
</div>
</div>

[[File:Iplan_sample.png|200px|thumb|left|Iplan]]

File:Iplan sample.png

2016-06-25T09:03:31Z

PU012:

2016 Summer Project Week

2016-06-20T11:29:34Z

PU012: /* IGT */

__NOTOC__

[[image:PW-Summer2016.png|300px]]
<br><br>
=Welcome to the web page for the 23rd Project Week!=
The 23rd Project Week open source hackathon is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].

='''Logistics'''=
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.
*'''Location:''' Heidelberg, Germany.
**'''Getting to Heidelberg:''' Most will fly into Frankfurt Main International (FRA). At the airport look for "long distance trains". There you can buy a ticket from the machine to Heidelberg Hauptbahnhof (main station), around EUR 25. It usually takes less than an hour, with a change in Mannheim to a regional train. https://www.bahn.de . If you arrive on Sunday you can take a bus from the station to the Old Town or where your hotel is. Heidelberg is pretty small, look for directions on Google Maps. If you arrive on Monday see below on how to get to DKFZ directly.
**'''Monday''' at German Cancer Research Center - DKFZ
*** Enter through the main lobby ( just north of https://goo.gl/maps/e3ZbcsM5KC82, you can't miss it, it's the tallest building on campus with a big "dkfz." on top). The meeting room is on the 8th floor (H824, "Glaskasten", "glass box"). We will leave some instructions how to get there at the reception. The meeting time in the lobby will be 8:45am for those who wish to be at the meeting room by 9am. Official activities will start at noon with lunch.
*** To get to DKFZ in the morning you can use the Google Maps link above, public transport information is available there. For people staying in the Old Town, near Bismarckplatz or coming from the station it will be most likely Bus #32, exit at stop "Chirurgische Klinik", which is the second one after crossing the Neckar river. More detailed timetables at [http://fahrplanauskunft.vrn.de/vrn/XSLT_TRIP_REQUEST2?language=en the local transportation services VRN]. If you are up early there is also a nice [https://goo.gl/maps/SRRG6x7KDNU2 walk along the river].
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS
**'''Wednesday-Saturday''' at the Congress Hall of CARS.
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html
*'''Registration Fee:''' Euro 650 (after April 26, 2016)
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.
*Preparatory Conference Calls:
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])
**Call #1 Tuesday, May 10, 3pm Boston time.
**Call #2 Tuesday, May 17, 3pm Boston time.
**Call #3 Tuesday, May 31, 9am Boston time.
**Call #4 Tuesday, Jun 7, 9am Boston time.
**Call #5 Tuesday, Jun 14, 9am Boston time.

='''Agenda'''=
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font>
{|border="1"
|-style="background:#b0d5e6;color:#02186f"
!style="width:7%" |Time
!style="width:15%" |Monday, June 20 <br> [https://goo.gl/maps/e3ZbcsM5KC82 DKFZ]
!style="width:3%" |Tuesday, June 21 <br> IPCAI
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS, Room Trübnersaal
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS, Room Trübnersaal
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS, Room Trübnersaal
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS, Room Trübnersaal
|-
|bgcolor="#ffffdd"|'''9am-10am'''
|bgcolor="#ffffff"|
|bgcolor="#ffffff"; rowspan="8"|
|bgcolor="#ffffff"|[[{{FULLPAGENAME}}/Workshop_on_Shared_Software_Platform_for_Ultrasound-Guided_Medical_Interventions|Workshop: Ultrasound-guided interventions software platform]]
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"| Progress Review
|-
|bgcolor="#ffffdd"|'''10:00am-10:30am'''
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|-
|bgcolor="#ffffdd"|'''10:30-12pm'''
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"| Progress Review
|-
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch and adjourn
|-
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''
|bgcolor="#ffffff"| Welcome! <br> Project Introductions
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"; rowspan="4"|
|-
|bgcolor="#ffffdd"|'''3:00pm-3:30pm'''
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|-
|bgcolor="#ffffdd"|'''3:30pm-5:00pm'''
|bgcolor="#ffffff"| What does a Neurosurgeon need from technologists? (Alexandra Golby, MD)
|bgcolor="#ffffff"| [[{{FULLPAGENAME}}/Breakout Session Slicer Extensions|Breakout Session: Slicer Extensions]] (JC, Steve)
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|-
|bgcolor="#ffffdd"|'''6:00pm'''
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|-
|}

='''Background'''=
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world and is led by [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD]. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].

An introduction and summary of all previous Project Events is available [[Project_Events|here]].

This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.

The 23rd Project Week is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).

Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].

='''Equipment'''=
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)
*[[2016_Summer_Project_Week:Equipment_Requests|Specialized equipment that people would like to have]] '''Updated June 16 2016'''

='''Projects'''=
* Use this [[2016_Summer_Project_Week_Template | template]] for project pages

=== IGT ===
* [[2016 Summer Project Week/Guidelets | Guildelets (Slicelets for IGT)]] (Tamas Ungi, Andras Lasso, Thomas Vaughan)
* [[2016 Summer Project Week/Tracked Ultrasound Standardization | Tracked Ultrasound Standardization II: The Implementering]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Longquan Chen, Adam Rankin, Thomas Kirchner, Janne Beate Bakeng)
* [[2016 Summer Project Week/Guided Ultrasound Calibration | Guided Ultrasound Calibration]] (Elvis Chen, Inês Prata, Tamas Ungi)
* [[2016 Summer Project Week/Integrating PLUS in applications using OpenIGTLink | Integrating PLUS in Applications using OpenIGTLink]] (Christian Askeland, Janne Beate Bakeng, Ole Vegard Solberg, Jon Eiesland, Longquan Chen, Simon Drouin)
* [[2016 Summer Project Week/Slicelet For Ultrasound Acquisition | Slicelet for Ultrasound Acquisition]] (Sarah Frisken, Prashin Unadkat, Steve Pieper, Anna Roethe)
* [[2016 Summer Project Week/Structural-functional measurements | Structural - Functional Relationship Measurements of Tractography Data with fMRI ]] (Yannick Suter, Lauren J. O'Donnell)
* [[2016 Summer Project Week/SliceTracker | SliceTracker for Data Collection and Prostate Biopsy Support ]] (Christian Herz, Peter Behringer, Andrey Fedorov)
* [[2016 Summer Project Week/Intra-procedural prostate motion characterization | Prostate Motion Characterization ]] (Peter Behringer, Christian Herz, Andrey Fedorov)
* [[2016 Summer Project Week/Sacral Neuromodulation | Sacral Neuromodulation ]] (Rocío López, Javier Pascau, Tamas Ungi)
* [[2016 Summer Project Week/Fusion of Electromagnetic and Surface Scanner Data | Fusion of Electromagnetic and Surface Scanner Data]] (Mónica García, Javier Pascau)
* [[2016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices | Integrating/Using OpenIGTLink for the Communications of Robotics Devices]] (Scheherazade Kraß, Longquan Chen)
* [[2016 Summer Project Week/Needle Segmentation from MRI | Needle Segmentation from MRI]] (Guillaume Pernelle, Tina Kapur, Paolo Zaffino, Salvatore Scaramuzzino, Maria Francesca Spadea)
* [[2016 Summer Project Week/Uncertainty-aware Information Fusion | Uncertainty-aware Information Fusion for Real-time Soft Tissue Motion Estimation]] (Bojan Kocev, Sarah Frisken, William Wells, Christian Hansen)
* [[2016 Summer Project Week/Intraoperative Imaging workflow in Hybrid ORs | Intraoperative Imaging in Hybrid ORs]] (Prashin Unadkat, Sarah Frisken, Anna Roethe, Christian Hansen)
* [[2016 Summer Project Week/Curve and Surface Creation from Fiducials|Curve and Surface Creation from Fiducials]] (Thomas Vaughan, Junichi Tokuda)

=== Infrastructure ===
* [[2016 Summer Project Week/medical imaging webapp | Medical Imaging WebApp Software]] (Steve Pieper, Marco Nolden, Hans Meine)
* [[2016 Summer Project Week/3D Lasso Selection | Implementation and Testing Performance of 3-D Lasso Selection within the Segmentation Editor Infrastructure ]] (Davide Punzo, Csaba Pinter, Andras Lasso, Steve Pieper)
* [[2016 Summer Project Week/Segmentations Integration | Integration of Segmentations Infrastructure and Related Modules to Slicer Core]] (Csaba Pinter, Andras Lasso)
* [[2016 Summer Project Week/DICOM Tractography Results | Finalizing DICOM Tractography Results Implementation in DCMTK for BWH Project]] (Lauren O'Donnell, Isaiah Norton, Michael Onken)
* [[2016 Summer Project Week/Feedback for Project Week | Measuring the Impact of Project Weeks]] (Tina Kapur)
* [[2016 Summer Project WEB and 3D DICOM viewer to the rest of us]] (Koji Kobayashi)

=== Augmented Reality ===
* [[2016 Summer Project Week/OpenVR_integration | OpenVR Integration]] (Adam Rankin, Andras Lasso)
* [[2016 Summer Project Week/VRPN Integration | VRPN Integration]] (Dženan Zukić)
* [[2016 Summer Project Week/AR with a tablet device in the surgical room | AR with a Tablet Device in the Surgical Room]] (David García, Javier Pascau)
* [[2016 Summer Project Week/Auditory Display | Auditory Display Integration]] (David Black, Sarah Frisken, Christian Hansen)

=== Informatics ===
* [[2016 Summer Project Week/dcmqi | DICOM for Quantitative Imaging (dcmqi) Library]] (Andrey Fedorov, Christian Herz, Marco Nolden, Hans Meine, Csaba Pinter, Steve Pieper, et al)
* [[2016 Summer Project Week/DICOM Parametric Maps | Finalizing DICOM Parametric Map Implementation in DCMTK for QIICR project]] (Michael Onken, Jan Schlamelcher, Andrey Fedorov, Christian Herz)
* [[2016 Summer Project Week/MeVisLab SEG Colors | Support Reading and Writing DICOM Tags for SEG Colors]] (Hans Meine)
* [[2016 Summer Project Week/Segmentation Editor and Terminology | Segmentation Editor and Terminology]] (Nicole Aucoin, Andrey Fedorov, Csaba Pinter, Andras Lasso)

=== Atlas construction ===
* [[2016 Summer Project Week/Histological Brain Atlas | Tool for the construction of an integrated brain atlas based on histology and MRI]] (Fernando Pérez García)

=== Tutorial===
* [[2016 Summer Project Week/SlicerDMRIDocumentation | Tutorials and Documentations in SlicerDMRI]] (Lauren J. O'Donnell, Fan Zhang, Isaiah Norton)
* [[2016 Summer Project Week/CameraTutorial | How to use Basler Cameras for Medical Applications]] (Peter Behringer, Santhirarajah Mathimugan, Steve Pieper)
* [[2016 Summer Project Week/UniversityCourse | Create the basics of a university course about medical image computing]] (Attila Nagy)

= '''Registrants''' =

'''REGISTRATION:''' Please add your name to this list if you are definitely planning to attend. If you are not already on it, please add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]. We need to know the number of people at DKFZ, so if you are there on Monday, please add "(Mon)" next to your name. Official registration for the event is through the CARS conference at http://www.cars-int.org/cars_2016/registration.html -- which you can do now or onsite.

# Tina Kapur, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA (Mon)
# Ron Kikinis, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA and University of Bremen / Fraunhofer MEVIS, Germany (Mon)
# Dženan Zukić, Kitware, USA
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal. (Mon)
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School (Mon)
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy (Mon)
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy (Mon)
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy (Mon)
# Steve Pieper, Isomics, Inc., USA (Mon)
# Nicole Aucoin, Brigham and Women's Hospital (Mon)
# Simon Drouin, Montreal Neurological Institute (Mon)
# Thomas Kirchner, German Cancer Research Center (Mon)
# Elvis Chen, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)
# Adam Rankin, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)
# Christian Askeland, SINTEF, Norway (Mon)
# Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany
# Longquan Chen, BWH/HMS, Boston, USA (Mon)
# Davide Punzo, Kapteyn Astronomical Institute, Netherlands (Mon)
# Lauren O'Donnell, BWH/HMS
# Yannick Suter, BWH/HMS (Mon)
# Junichi Tokuda, BWH/HMS (Mon)
# Sarah Frisken, BWH/HMS (Mon)
# Prashin Unadkat, BWH/HMS
# Anna Roethe, Charite, Berlin
# Michael Onken, Open Connections, Germany (Mon)
#Jan Schlamelcher, Open Connections/OFFIS, Germany
# Janne Beate Bakeng, SINTEF, Norway
# Ole Vegard Solberg, SINTEF, Norway
# Jon Eiesland, SINTEF, Norway
# Tamas Ungi, Queen's University, Canada (Mon)
# Andras Lasso, Queen's University, Canada (Mon)
# Csaba Pinter, Queen's University, Canada (Mon)
# Thomas Vaughan, Queen's University, Canada (Mon)
# Javier Pascau, Universidad Carlos III de Madrid, Spain (Mon)
# Verónica García-Vazquez, Universidad Carlos III de Madrid, Spain (Mon)
# Mónica García-Sevilla, Universidad Carlos III de Madrid, Spain (Mon)
# David García-Mato, Universidad Carlos III de Madrid, Spain (Mon)
# Rocío López-Velazco, Universidad Carlos III de Madrid, Spain (Mon)
# Raúl San José, BWH/HMS, Boston
# Pietro Nardeli, BWH/HMS, Boston
# Andrey Fedorov, BWH/HMS, Boston (Mon, Wed, Thu)
# Christian Herz, BWH/HMS, Boston (Mon)
# Frank Lindseth, NTNU/SINTEF, Norway
# Peter Behringer, Basler AG, Germany
# Santhirarajah Mathimugan, Basler AG, Germany
# Koji Kobayashi, Vocsis Corporation, Japan
# David Black, University of Bremen / Fraunhofer MEVIS, Germany (Mon)
#William Wells, BWH/HMS (Mon)
# Attila Nagy, University of Szeged, Hungary (Mon)
# Bojan Kocev, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)
# Sara Fernández Vidal, [http://icm-institute.org/en/ Institute of the Brain and Spine], France (Mon)
# Fernando Pérez García, [http://icm-institute.org/en/ Institute of the Brain and Spine], France (Mon)
# Marco Nolden, [http://mbi.dkfz-heidelberg.de Medical and Biological Informatics, German Cancer Research Center] (Mon)
# Christian Hansen, [http://isgwww.cs.uni-magdeburg.de/cas/ University of Magdeburg], Germany (Mon)
# Julian Hettig, [http://isgwww.cs.uni-magdeburg.de/cas/ University of Magdeburg], Germany

'''Please don't forget to add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].'''

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-20T10:54:05Z

PU012: /* Key Investigators */

==Key Investigators==
* Prashin Unadkat, BWH/HMS
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite/Humboldt University
* Christian Hansen, Otto-von-Guericke University Magdeburg

==Project Description==

Document, understand, refine and evaluate technology assisted workflows for various neurosurgical procedures in AMIGO compared to standard ORs and other hybrid ORs

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Document and refine workflows for various procedures in AMIGO.
* Also, define meaningful indications for image-guided surgical treatment in AMIGO as opposed to standard ORs
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* 5 year evaluation of Patient cases operated in AMIGO
* Analyzed and summarized current workflow patterns in AMIGO
* Reviewed the literature regarding current practices of Intra-operative Imaging
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* To be discussed at Project Week
</div>
</div>

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-20T10:11:01Z

PU012: updated objectives, approach, plan and progress

==Key Investigators==
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite/Humboldt University
* Prashin Unadkat, BWH/HMS
* Christian Hansen, Otto-von-Guericke University Magdeburg

==Project Description==

Document, understand, refine and evaluate technology assisted workflows for various neurosurgical procedures in AMIGO compared to standard ORs and other hybrid ORs

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* Document and refine workflows for various procedures in AMIGO.
* Also, define meaningful indications for image-guided surgical treatment in AMIGO as opposed to standard ORs
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* 5 year evaluation of Patient cases operated in AMIGO
* Analyzed and summarized current workflow patterns in AMIGO
* Reviewed the literature regarding current practices of Intra-operative Imaging
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
* To be discussed at Project Week
</div>
</div>

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-20T09:47:17Z

PU012: edited Key investigators

==Key Investigators==
* Sarah Frisken, BWH/HMS
* Anna Roethe, Charite
* Prashin Unadkat, BWH/HMS

2016 Summer Project Week/Intraoperative Functional Guidance workflows in Neurosurgery

2016-06-20T09:45:59Z

PU012: Added Key investigators

==Key Investigators==
* Bojan Kocev, University of Bremen
* Sarah Frisken, BWH/HMS
* William Wells, BWH/HMS

2016 Summer Project Week

2016-06-20T09:43:05Z

PU012: added Intraoperative Imaging in Hybrid ORs project

__NOTOC__

[[image:PW-Summer2016.png|300px]]
<br><br>
=Welcome to the web page for the 23rd Project Week!=
The 23rd Project Week open source hackathon is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].

='''Logistics'''=
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.
*'''Location:''' Heidelberg, Germany.
**'''Getting to Heidelberg:''' Most will fly into Frankfurt Main International (FRA). At the airport look for "long distance trains". There you can buy a ticket from the machine to Heidelberg Hauptbahnhof (main station), around EUR 25. It usually takes less than an hour, with a change in Mannheim to a regional train. https://www.bahn.de . If you arrive on Sunday you can take a bus from the station to the Old Town or where your hotel is. Heidelberg is pretty small, look for directions on Google Maps. If you arrive on Monday see below on how to get to DKFZ directly.
**'''Monday''' at German Cancer Research Center - DKFZ
*** Enter through the main lobby ( just north of https://goo.gl/maps/e3ZbcsM5KC82, you can't miss it, it's the tallest building on campus with a big "dkfz." on top). The meeting room is on the 8th floor (H824, "Glaskasten", "glass box"). We will leave some instructions how to get there at the reception. The meeting time in the lobby will be 8:45am for those who wish to be at the meeting room by 9am. Official activities will start at noon with lunch.
*** To get to DKFZ in the morning you can use the Google Maps link above, public transport information is available there. For people staying in the Old Town, near Bismarckplatz or coming from the station it will be most likely Bus #32, exit at stop "Chirurgische Klinik", which is the second one after crossing the Neckar river. More detailed timetables at [http://fahrplanauskunft.vrn.de/vrn/XSLT_TRIP_REQUEST2?language=en the local transportation services VRN]. If you are up early there is also a nice [https://goo.gl/maps/SRRG6x7KDNU2 walk along the river].
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS
**'''Wednesday-Saturday''' at the Congress Hall of CARS.
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html
*'''Registration Fee:''' Euro 650 (after April 26, 2016)
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.
*Preparatory Conference Calls:
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])
**Call #1 Tuesday, May 10, 3pm Boston time.
**Call #2 Tuesday, May 17, 3pm Boston time.
**Call #3 Tuesday, May 31, 9am Boston time.
**Call #4 Tuesday, Jun 7, 9am Boston time.
**Call #5 Tuesday, Jun 14, 9am Boston time.

='''Agenda'''=
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font>
{|border="1"
|-style="background:#b0d5e6;color:#02186f"
!style="width:7%" |Time
!style="width:15%" |Monday, June 20 <br> [https://goo.gl/maps/e3ZbcsM5KC82 DKFZ]
!style="width:3%" |Tuesday, June 21 <br> IPCAI
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS, Room Trübnersaal
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS, Room Trübnersaal
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS, Room Trübnersaal
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS, Room Trübnersaal
|-
|bgcolor="#ffffdd"|'''9am-10am'''
|bgcolor="#ffffff"|
|bgcolor="#ffffff"; rowspan="8"|
|bgcolor="#ffffff"|[[{{FULLPAGENAME}}/Workshop_on_Shared_Software_Platform_for_Ultrasound-Guided_Medical_Interventions|Workshop: Ultrasound-guided interventions software platform]]
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"| Progress Review
|-
|bgcolor="#ffffdd"|'''10:00am-10:30am'''
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|-
|bgcolor="#ffffdd"|'''10:30-12pm'''
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"| Progress Review
|-
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch
|bgcolor="#ffffaa"|Lunch and adjourn
|-
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''
|bgcolor="#ffffff"| Welcome! <br> Project Introductions
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"; rowspan="4"|
|-
|bgcolor="#ffffdd"|'''3:00pm-3:30pm'''
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|bgcolor="#f0e68b"| Coffee Break
|-
|bgcolor="#ffffdd"|'''3:30pm-5:00pm'''
|bgcolor="#ffffff"| What does a Neurosurgeon need from technologists? (Alexandra Golby, MD)
|bgcolor="#ffffff"| [[{{FULLPAGENAME}}/Breakout Session Slicer Extensions|Breakout Session: Slicer Extensions]] (JC, Steve)
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|-
|bgcolor="#ffffdd"|'''6:00pm'''
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|bgcolor="#ffffff"|
|-
|}

='''Background'''=
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world and is led by [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD]. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].

An introduction and summary of all previous Project Events is available [[Project_Events|here]].

This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.

The 23rd Project Week is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).

Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].

='''Equipment'''=
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)
*[[2016_Summer_Project_Week:Equipment_Requests|Specialized equipment that people would like to have]] '''Updated June 16 2016'''

='''Projects'''=
* Use this [[2016_Summer_Project_Week_Template | template]] for project pages

=== IGT ===
* [[2016 Summer Project Week/Guidelets | Guildelets (Slicelets for IGT)]] (Tamas Ungi, Andras Lasso)
* [[2016 Summer Project Week/Tracked Ultrasound Standardization | Tracked Ultrasound Standardization II: The Implementering]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Longquan Chen, Adam Rankin, Thomas Kirchner, Janne Beate Bakeng)
* [[2016 Summer Project Week/Guided Ultrasound Calibration | Guided Ultrasound Calibration]] (Elvis Chen, Inês Prata, Tamas Ungi)
* [[2016 Summer Project Week/Integrating PLUS in applications using OpenIGTLink | Integrating PLUS in Applications using OpenIGTLink]] (Christian Askeland, Janne Beate Bakeng, Ole Vegard Solberg, Jon Eiesland, Longquan Chen, Simon Drouin)
* [[2016 Summer Project Week/Slicelet For Ultrasound Acquisition | Slicelet for Ultrasound Acquisition]] (Sarah Frisken, Prashin Unadkat, Steve Pieper)
* [[2016 Summer Project Week/Structural-functional measurements | Structural - Functional Relationship Measurements of Tractography Data with fMRI ]] (Lauren J. O'Donnell, Yannick Suter)
* [[2016 Summer Project Week/SliceTracker | SliceTracker for Data Collection and Prostate Biopsy Support ]] (Christian Herz, Peter Behringer, Andrey Fedorov)
* [[2016 Summer Project Week/Intra-procedural prostate motion characterization | Prostate Motion Characterization ]] (Peter Behringer, Christian Herz, Andrey Fedorov)
* [[2016 Summer Project Week/Sacral Neuromodulation | Sacral Neuromodulation ]] (Javier Pascau, Rocío López, Tamas Ungi)
* [[2016 Summer Project Week/Fusion of Electromagnetic and Surface Scanner Data | Fusion of Electromagnetic and Surface Scanner Data]] (Javier Pascau, Mónica García)
* [[2016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices | Integrating/Using OpenIGTLink for the Communications of Robotics Devices]] (Scheherazade Kraß, Longquan Chen)
* [[2016 Summer Project Week/Needle Segmentation from MRI | Needle Segmentation from MRI]] (Guillaume Pernelle, Tina Kapur, Paolo Zaffino, Salvatore Scaramuzzino, Maria Francesca Spadea)
* [[2016 Summer Project Week/Uncertainty-aware Information Fusion | Uncertainty-aware Information Fusion for Real-time Soft Tissue Motion Estimation]] (Bojan Kocev, Sarah Frisken, William Wells)
* [[2016 Summer Project Week/Intraoperative Imaging workflow in Hybrid ORs | Intraoperative Imaging in Hybrid ORs]] (Sarah Frisken, Anna Roethe, Prashin Unadkat)

=== Augmented Reality ===
* [[2016 Summer Project Week/VRPN Integration | VRPN Integration]] (Dženan Zukić)
* [[2016 Summer Project Week/OpenVR_integration | OpenVR Integration]] (Adam Rankin, Andras Lasso)
* [[2016 Summer Project Week/AR with a tablet device in the surgical room | AR with a Tablet Device in the Surgical Room]] (Javier Pascau, David García)
* [[2016 Summer Project Week/Auditory Display | Auditory Display Integration]] (David Black)

=== Cloud ===
* [[2016 Summer Project Week/medical imaging webapp | Medical Imaging WebApp Software]] (Steve Pieper, Marco Nolden, Hans Meine)

=== Informatics ===
* [[2016 Summer Project Week/DICOM Parametric Maps | Finalizing DICOM Parametric Map Implementation in DCMTK for QIICR project]] (Michael Onken, Jan Schlamelcher, Andrey Fedorov, Christian Herz)
* [[2016 Summer Project Week/dcmqi | DICOM for Quantitative Imaging (dcmqi) Library]] (Andrey Fedorov, Christian Herz, Marco Nolden, Hans Meine, Csaba Pinter, Steve Pieper, et al)
* [[2016 Summer Project Week/MeVisLab SEG Colors | Support Reading and Writing DICOM Tags for SEG Colors]] (Hans Meine)
* [[2016 Summer Project Week/Segmentation Editor and Terminology | Segmentation Editor and Terminology]] (Nicole Aucoin, Andrey Fedorov, Csaba Pinter, Andras Lasso)

=== Infrastructure ===
* [[2016 Summer Project Week/3D Lasso Selection | Implementation and Testing Performance of 3-D Lasso Selection within the Segmentation Editor Infrastructure ]] (Davide Punzo, Csaba Pinter, Andras Lasso, Steve Pieper)
* [[2016 Summer Project Week/Segmentations Integration | Integration of Segmentations Infrastructure and Related Modules to Slicer Core]] (Csaba Pinter, Andras Lasso)
* [[2016 Summer Project Week/DICOM Tractography Results | Finalizing DICOM Tractography Results Implementation in DCMTK for BWH Project]] (Michael Onken)
* [[2016 Summer Project Week/Feedback for Project Week | Measuring the Impact of Project Weeks]] (Tina Kapur)

=== Atlas construction ===
* [[2016 Summer Project Week/Histological Brain Atlas | Tool for the construction of an integrated brain atlas based on histology and MRI]] (Fernando Pérez García)

=== Tutorial===
* [[2016 Summer Project Week/CameraTutorial | How to use Basler Cameras for Medical Applications]] (Peter Behringer, Santhirarajah Mathimugan, Steve Pieper)
* [[2016 Summer Project Week/SlicerDMRIDocumentation | Tutorials and Documentations in SlicerDMRI]] (Lauren J. O'Donnell, Fan Zhang, Isaiah Norton)
* [[2016 Summer Project Week/UniversityCourse | Create the basics of a university course about medical image computing]] (Attila Nagy)

= '''Registrants''' =

'''REGISTRATION:''' Please add your name to this list if you are definitely planning to attend. If you are not already on it, please add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]. We need to know the number of people at DKFZ, so if you are there on Monday, please add "(Mon)" next to your name. Official registration for the event is through the CARS conference at http://www.cars-int.org/cars_2016/registration.html -- which you can do now or onsite.

# Tina Kapur, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA (Mon)
# Ron Kikinis, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA and University of Bremen / Fraunhofer MEVIS, Germany (Mon)
# Dženan Zukić, Kitware, USA
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal. (Mon)
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School (Mon)
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy (Mon)
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy (Mon)
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy (Mon)
# Steve Pieper, Isomics, Inc., USA (Mon)
# Nicole Aucoin, Brigham and Women's Hospital (Mon)
# Simon Drouin, Montreal Neurological Institute (Mon)
# Thomas Kirchner, German Cancer Research Center (Mon)
# Elvis Chen, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)
# Adam Rankin, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)
# Christian Askeland, SINTEF, Norway (Mon)
# Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany
# Longquan Chen, BWH/HMS, Boston, USA (Mon)
# Davide Punzo, Kapteyn Astronomical Institute, Netherlands (Mon)
# Lauren O'Donnell, BWH/HMS
# Yannick Suter, BWH/HMS (Mon)
# Junichi Tokuda, BWH/HMS (Mon)
# Sarah Frisken, BWH/HMS (Mon)
# Prashin Unadkat, BWH/HMS
# Anna Roethe, Charite, Berlin
# Michael Onken, Open Connections, Germany (Mon)
#Jan Schlamelcher, Open Connections/OFFIS, Germany
# Janne Beate Bakeng, SINTEF, Norway
# Ole Vegard Solberg, SINTEF, Norway
# Jon Eiesland, SINTEF, Norway
# Tamas Ungi, Queen's University, Canada (Mon)
# Andras Lasso, Queen's University, Canada (Mon)
# Csaba Pinter, Queen's University, Canada (Mon)
# Thomas Vaughan, Queen's University, Canada (Mon)
# Javier Pascau, Universidad Carlos III de Madrid, Spain (Mon)
# Verónica García-Vazquez, Universidad Carlos III de Madrid, Spain (Mon)
# Mónica García-Sevilla, Universidad Carlos III de Madrid, Spain (Mon)
# David García-Mato, Universidad Carlos III de Madrid, Spain (Mon)
# Rocío López-Velazco, Universidad Carlos III de Madrid, Spain (Mon)
# Raúl San José, BWH/HMS, Boston
# Pietro Nardeli, BWH/HMS, Boston
# Andrey Fedorov, BWH/HMS, Boston (Mon, Wed, Thu)
# Christian Herz, BWH/HMS, Boston (Mon)
# Frank Lindseth, NTNU/SINTEF, Norway
# Peter Behringer, Basler AG, Germany
# Santhirarajah Mathimugan, Basler AG, Germany
# Koji Kobayashi, Vocsis Corporation, Japan
# David Black, University of Bremen / Fraunhofer MEVIS, Germany (Mon)
#William Wells, BWH/HMS (Mon)
# Attila Nagy, University of Szeged, Hungary (Mon)
# Bojan Kocev, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)
# Sara Fernández Vidal, [http://icm-institute.org/en/ Institute of the Brain and Spine], France (Mon)
# Fernando Pérez García, [http://icm-institute.org/en/ Institute of the Brain and Spine], France (Mon)
# Marco Nolden, [http://mbi.dkfz-heidelberg.de Medical and Biological Informatics, German Cancer Research Center] (Mon)
# Christian Hansen, [http://isgwww.cs.uni-magdeburg.de/cas/ University of Magdeburg], Germany (Mon)
# Julian Hettig, [http://isgwww.cs.uni-magdeburg.de/cas/ University of Magdeburg], Germany

'''Please don't forget to add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].'''

TutorialContestJanuray2016Review

2016-01-07T22:26:29Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Tutorial Template format followed'''||'''8) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac||Total'''
|-
| Fiber Bundle Selection And Scalar Measurement (http://wiki.na-mic.org/Wiki/index.php/FiberBundleSelectionAndScalarMeasurement_TutorialContestWinter2016) ||4.5.0-1 release (1) || Mac, Windows, Linux(3) ||Yes (1)||Yes(1) ||
|| No ||Yes(1)|| No || Yes(1) ||Yes(1)||Yes(1)||10
|-
| Plastimatch Tutorial Update Winter 2016 (http://wiki.na-mic.org/Wiki/index.php/Plastimatch_TutorialContestWinter2016) ||4.5.0-1 release (1)|| Linux (1)|| Yes(1) ||Yes(1) || GCSHARP@PARTNERS.ORG (1) || No ||Yes(1)|| No ||No ||Yes(1) ||No|| 7
|-
|UKF-Tractography (http://wiki.na-mic.org/Wiki/index.php/UKF-Tractography_TutorialContestWinter2016) ||4.5.0-1 release(1) || Mac (1)|| Yes(1) || Yes(1) || yogesh@bwh.harvard.edu (1) ||No(0) ||Yes(1)||No ||No || No || Yes(1)||7
|-
|Subject Hierarchy (http://wiki.na-mic.org/Wiki/index.php/SubjectHierarchyTutorial2016Winter) ||4.5.0-1 release(1) ||Mac, Windows, Linux(3) ||Yes(1)|| Yes(1) ||csaba.pinter@queensu.ca (1) || Yes(1) ||Yes(1)|| No || Yes(1) || Yes(1) || Yes(1)||12
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

==Judges==
*Parshin Unadkat
*Utsav Soni
*Ye Cheng
*Valentin Demeusy

TutorialContestJanuray2016Review

2016-01-07T22:08:23Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''6) Tutorial Template format followed'''||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac||Total'''
|-
| Fiber Bundle Selection And Scalar Measurement (http://wiki.na-mic.org/Wiki/index.php/FiberBundleSelectionAndScalarMeasurement_TutorialContestWinter2016) ||4.5.0-1 release (1) || Mac, Windows, Linux(3) ||Yes (1)||Yes(1) ||
|| No ||Yes(1)|| No || Yes(1) ||Yes(1)||Yes(1)||10
|-
| Plastimatch Tutorial Update Winter 2016 (http://wiki.na-mic.org/Wiki/index.php/Plastimatch_TutorialContestWinter2016) ||4.5.0-1 release (1)|| Linux (1)|| Yes(1) ||Yes(1) || GCSHARP@PARTNERS.ORG (1) || No ||Yes(1)|| No ||No ||Yes(1) ||No|| 7
|-
|UKF-Tractography (http://wiki.na-mic.org/Wiki/index.php/UKF-Tractography_TutorialContestWinter2016) ||4.5.0-1 release(1) || Mac (1)|| Yes(1) || Yes(1) || yogesh@bwh.harvard.edu (1) ||No(0) ||Yes(1)||No ||No || No || Yes(1)||7
|-
|Subject Hierarchy (http://wiki.na-mic.org/Wiki/index.php/SubjectHierarchyTutorial2016Winter) ||4.5.0-1 release(1) ||Mac, Windows, Linux(3) ||Yes(1)|| Yes(1) ||csaba.pinter@queensu.ca (1) || Yes(1) ||Yes(1)|| No || Yes(1) || Yes(1) || Yes(1)||12
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

==Judges==
*Parshin Unadkat
*Utsav Soni
*Ye Cheng
*Valentin Demeusy

TutorialContestJanuray2016Review

2016-01-07T20:50:00Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''6) Tutorial Template format followed'''||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement (http://wiki.na-mic.org/Wiki/index.php/FiberBundleSelectionAndScalarMeasurement_TutorialContestWinter2016) ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No ||Yes|| No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 (http://wiki.na-mic.org/Wiki/index.php/Plastimatch_TutorialContestWinter2016) ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No ||Yes|| No ||No ||No ||No
|-
|UKF-Tractography (http://wiki.na-mic.org/Wiki/index.php/UKF-Tractography_TutorialContestWinter2016) ||4.5.0-1 release || Mac || Yes || Yes || yogesh@bwh.harvard.edu ||No ||Yes||No ||No || No || Yes
|-
|Subject Hierarchy (http://wiki.na-mic.org/Wiki/index.php/SubjectHierarchyTutorial2016Winter) ||4.5.0-1 release ||Mac, Windows, Linux ||Yes|| Yes ||csaba.pinter@queensu.ca || Yes ||Yes|| No || Yes || Yes || Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

==Judges==
*Judge #1: Parshin Unadkat
*Judge #2: Utsav Soni
*Judge #3: Ye Cheng
*Judge #4: Valentin Demeusy

TutorialContestJanuray2016Review

2016-01-07T20:31:03Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''6) Tutorial Template format followed'''||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No ||Yes|| No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No ||Yes|| No ||No ||No ||No
|-
|UKF-Tractography ||4.5.0-1 release || Mac || Yes || Yes || yogesh@bwh.harvard.edu ||No ||Yes||No ||No || No || Yes
|-
|Subject Hierarchy ||4.5.0-1 release ||Mac, Windows, Linux ||Yes|| Yes ||csaba.pinter@queensu.ca || Yes ||Yes|| No || Yes || Yes || Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

TutorialContestJanuray2016Review

2016-01-07T20:18:00Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No || No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No || No ||No ||No ||No
|-
|UKF-Tractography ||4.5.0-1 release || Mac || Yes || Yes || yogesh@bwh.harvard.edu ||No ||No ||No || No || Yes
|-
|OpenIGTLink Tutorial||4.5.0-1 release ||Mac, Windows, Linux || || |||| || || || ||
|-
|Subject Hierarchy ||4.5.0-1 release ||Mac, Windows, Linux ||Yes|| ||csaba.pinter@queensu.ca || Yes || No || Yes || Yes || Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

TutorialContestJanuray2016Review

2016-01-07T19:53:52Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No || No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No || No ||No ||No ||No
|-
|UKF-Tractography ||4.5.0-1 release ||Mac, Windows, Linux || Yes || Yes || yogesh@bwh.harvard.edu ||No ||No ||No || No || Yes
|-
|OpenIGTLink Tutorial||4.5.0-1 release ||Mac, Windows, Linux || || |||| || || || ||
|-
|Subject Hierarchy ||4.5.0-1 release ||Mac, Windows, Linux ||Yes|| ||csaba.pinter@queensu.ca || Yes || No || Yes || Yes || Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

TutorialContestJanuray2016Review

2016-01-07T15:08:31Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No || No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No || No ||No ||No ||No
|-
|UKF-Tractography ||4.5.0-1 release ||Mac, Windows, Linux || Yes || Yes || yogesh@bwh.harvard.edu ||No ||No ||No || No || Yes
|-
|OpenIGTLink Tutorial||4.5.0-1 release ||Mac, Windows, Linux || || |||| || || || ||
|-
|Subject Hierarchy ||4.5.0-1 release ||Mac, Windows, Linux ||Yes|| ||csaba.pinter@queensu.ca || Yes || No || Yes || Yes || Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

2016 Winter Project Week/Dinner

2016-01-06T23:33:20Z

PU012: /* RSVPs */

==Dinner Specs==

*Date and Time: Thursday, January 7th, 6pm
*Location: Desi Dhaba, 401 Massachusetts Ave, Cambridge (about 10 minute walk from Project Week)
*Food: Indian. (Veg and non-veg options, naan, rice)
*Cost: $25 to be paid in cash to Katie before or when you get to the restaurant (for BWH attendees, this is reimbursable). You will get a receipt for it.
*Drinks: tap water is included in this price. Beyond that each person pays individually for their drinks.

<b>Disclaimer</b>: We went yesterday (Monday) and they were not serving alcohol. - Adam Rankin

==RSVPs==
#Tina Kapur
#Ron Kikinis
#Steve Pieper
# Andrey Fedorov
# Sonia Pujol
#Hans Meine
#Michael Onken
# Junichi Tokuda
# Dan Blezek
# Johan Andruejol
# Christian Askeland
# Lucia Cevidanes
# Fan Zhang
# Pegah Kahali
# Simon Drouin
# Thomas Kirchner
# Janek Groehl
# Andras Lasso
# Adam Rankin
# Kyle Sunderland
# Csaba Pinter
# Isaiah Norton
# Beatriz Paniagua
# Beatriz Panigua Friend
# Jean-Christophe Fillion-Robin
# Matthew Toews
# Prashin Unadkat
# Utsav Soni

TutorialContestJanuray2016Review

2016-01-06T19:21:30Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No || No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No || No ||No ||No ||No
|-
|UKF-Tractography ||4.5.0-1 release ||Mac, Windows, Linux || Yes || Yes || yogesh@bwh.harvard.edu ||No ||No ||No || No || Yes
|-
|OpenIGTLink Tutorial||4.5.0-1 release ||Mac, Windows, Linux || || |||| || || || ||
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

TutorialContestJanuray2016Review

2016-01-06T19:20:37Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No || No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || No || No || || ||
|-
|UKF-Tractography ||4.5.0-1 release ||Mac, Windows, Linux || Yes || Yes || yogesh@bwh.harvard.edu ||No ||No ||No || No || Yes
|-
|OpenIGTLink Tutorial||4.5.0-1 release ||Mac, Windows, Linux || || |||| || || || ||
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

2016 Winter Project Week/Dinner

2016-01-06T18:04:07Z

PU012: /* RSVPs */

==Dinner Specs==

*Date and Time: Thursday, January 7th, 6pm
*Location: Desi Dhaba, 401 Massachusetts Ave, Cambridge (about 10 minute walk from Project Week)
*Food: Indian. (Veg and non-veg options, naan, rice)
*Cost: $25 to be paid in cash when you get to the restaurant (for BWH attendees, this is reimbursable)
*Drinks: tap water is included in this price. Beyond that each person pays individually for their drinks - alcohol or otherwise

<b>Disclaimer</b>: We went yesterday (Monday) and they were not serving alcohol. - Adam Rankin

==RSVPs==
#Tina Kapur
#Ron Kikinis
#Steve Pieper
# Andrey Fedorov
# Sonia Pujol
#Hans Meine
#Michael Onken
# Junichi Tokuda
# Dan Blezek
# Beatriz Paniagua
# Johan Andruejol
# Christian Askeland
# Lucia Cevidanes
# Fan Zhang
# Pegah Kahali
# Simon Drouin
# Thomas Kirchner
# Janek Groehl
# Andras Lasso
# Adam Rankin
# Kyle Sunderland
# Csaba Pinter
# Isaiah Norton
# Beatriz Paniagua
# Beatriz Panigua Friend
# Jean-Christophe Fillion-Robin
# Matthew Toews
# Prashin Unadkat

TutorialContestJanuray2016Review

2016-01-06T17:42:15Z

PU012: /* Submissions */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows'''|| '''Test Linux'''||'''Test Mac'''
|-
| Fiber Bundle Selection And Scalar Measurement ||4.5.0-1 release || Mac, Windows, Linux ||Yes||Yes || FZHANG@BWH.HARVARD.EDU
|| No || No || Yes ||Yes||Yes
|-
| Plastimatch Tutorial Update Winter 2016 ||4.5.0-1 release || Mac, Windows, Linux || Yes ||Yes || GCSHARP@PARTNERS.ORG || Yes || No || || ||
|-
|UKF-Tractography ||4.5.0-1 release ||Mac, Windows, Linux || Yes || ||pinter@cs.queensu.ca ||Yes ||No ||No ||Yes ||
|-
|OpenIGTLink Tutorial||4.5.0-1 release ||Mac, Windows, Linux ||No ||Yes ||dmwelch@healthcare.uiowa.edu ||No ||No ||No ||No ||Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.

TutorialContestJanuray2016Review

2016-01-05T22:10:35Z

PU012: /* Rules */

=Submissions=
<table>
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
|-
|'''Tutorial Name'''||'''1) Slicer Version'''||'''2) Platforms'''||'''3) Slicer License'''||'''4) Data anonymized'''||'''5) Contact Info'''||'''6) Tutorial Template followed'''|||'''7) Additional Instructions'''||'''Test Windows XP'''||'''Test Windows 7''|| '''Test Linux 64'''||'''Test Linux 32'''||'''Test mac'''
|-
| Cardiac MRI Toolkit Extension ||4.2/Nightly || windows 7, MAC, linux ||No||Yes ||salma.bengali@carma.utah.edu ||Yes ||No ||No ||Yes ||Yes||No||Yes
|-
| Hello CLI: contributing an algorithm into Slicer 4 ||4.2.2 ||windows 7, linux ||No ||Yes ||gcsharp@partners.org ||No ||No ||No ||Yes ||Yes ||No ||No
|-
|SlicerRT Extension ||4.2/Nightly||windows 7, MAC, linux ||No ||Yes(Phantom) ||pinter@cs.queensu.ca ||Yes ||No ||No ||Yes ||Yes ||No ||Yes
|-
|DTIPrep ||4.2 ||MAC, linux ||No ||Yes ||dmwelch@healthcare.uiowa.edu ||No ||No ||No ||No ||Yes ||No ||Yes
|-

</table>

=Rules=

The evaluation criteria for the 2016 tutorial contest are below:
*Tutorial must be based on the Slicer 4.5 nightly build available at the link below:
**[http://slicer.cdash.org/viewFiles.php?buildid=726991 2015.12.15 Slicer4.5 (Linux)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726992 2015.12.15 Slicer4.5 (Windows)]
**[http://slicer.cdash.org/viewFiles.php?buildid=726990 2015.12.15 Slicer4.5 (MacOSX)]
*To enter the contest, you must provide a self-test that can be run in Slicer and '''a version of the tutorial that works on all supported platforms (Mac,Windows,Linux)+'''.
*Tutorial and all of its components (data, powerpoints/pdfs, additional modules etc.) must be released under the [http://www.slicer.org/slicerWiki/index.php/Slicer:license Slicer license]
*Tutorial data must be anonymized
*Tutorial must include contact information of the primary author (e-mail and phone number)
*Tutorial must follow the guidelines specified above and use the [[Media:TutorialContest_Template_2016.ppt‎ | Winter 2016 contest tutorial template]].
*If applicable, the tutorial must provide clear directions for downloading and installing additional modules <br>
+Applicants will work with the NAC Training Core in advance to do the multi-platform testing.