NAMIC Wiki - User contributions [en]

Events

2023-09-20T14:31:40Z

Pieper: /* Introduction */ add links to updated information

__NOTOC__
==Introduction==
NA-MIC organizes a variety of events:

*Workshops address specific research focus areas.
*Training events aim at training NA-MIC participants and outsiders in NA-MIC technologies.
*Project weeks are intended for making progress in a variety of projects.

The majority of NA-MIC events are hands-on and open to collaborators and interested scientists.

'''Note: The NA-MIC grant has ended, but activities continue! See the following links for more information:'''

 

* https://discourse.slicer.org/c/announcements/events/27
* https://projectweek.na-mic.org/
* https://www.slicer.org/

==[[TCON:Main|Telephone Conferences]]==

==Upcoming Events==
==2021==

==Standing Events==

*[[TCON:Main|A list of all upcoming and past teleconferences]]
*[[Engineering:Programming_Events|Hands on Project Events]]
*[https://www.slicer.org/wiki/Slicer:Developer_Meetings Slicer developer meetings]
*[[Event:Journal Club at BWH|Journal Club at BWH]]

==Past Events==

==2021==

*Nov.28-Dec.2: [[RSNA_2021 | 107th Annual Meeting of the Radiological Society of North America (RSNA 2021), Chicago, IL]]
*Oct.22: [https://docs.google.com/document/d/1b5gRfur3HA5Bi2Eyvm1A2NmEWQfjC5dNo7eOpG9HlJ0/edit Fall 2021 Boston Medical Imaging Workshop, Massachusetts Institute of Technology, Cambridge, MA]
*Sept.27-Oct.1st: [https://www.miccai2021.org/en/ 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021) (virtual)]
*June 28-July 2: [https://projectweek.na-mic.org/PW35_2021_Virtual/ NA-MIC Project Week 35 (Virtual)]
*April 1-4: [[AOCN2021 | Asian Oceanian Congress of Neurology (AOCN 2021), Taipei, Taiwan]]

===2020===

*Nov.19-Dec.5: [[RSNA_2020 |106th Annual Meeting of of the Radiological Society of North America (RSNA 2020) (virtual)]]
*Dec 14-18 [https://projectweek.na-mic.org/PW34_2020_Virtual/ NA-MIC Project Week 34 (virtual)]
*January 20-24: [https://na-mic.org/wiki/Project_Week_33 33rd Project Week], Las Palmas, Gran Canaria

===2019===

*December 1-6: [[RSNA_2019 | 105th Annual Meeting of the Radiological Society of North America (RSNA 2019), Chicago, IL]]

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*November 25, 2019: [[HST_583 | Harvard MIT Division of Health Science and Technology HST.583 Course - Presurgical Mapping & Clinical Decision-making]], MIT, Cambridge, MA

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*October 17, 2019: [[Taiwan_2019 | 3D Slicer Workshop in Taiwan]]
*October 2-3, 2019: [[Medicinteknikdagarna_2019 | Medicinteknikdagarna, Linköping, Sweden]]

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*September 30-October 1st: [[Linköping_2019 | 3D Slicer PhD Course, Linköping University, Linköping, Sweden]]
*September 9-12: [[WFNS_2019 | World Federation of Neurosurgical Societies Special World Congress (WFNS 2019), Beijing, China]]

----

*July 15-19: [https://na-mic.org/wiki/Project_Week_32 32nd Project Week], Robarts Research, London, Canada
*July 5: [https://spujol.github.io/3DSlicerWorkshop-Institut-Pascal/ 3D Slicer Workshop], Institut Pascal, Clermont-Ferrand, France

----

*June 24-28: [https://na-mic.org/wiki/Project_Week_31 31st Project Week], MIT, Cambridge, MA
*June 17-21: [https://www.cars2019.org/ International Conference on Computer Assisted Radiology and Surgery (CARS 2019)], Rennes, France
*June 18: [http://www.slicerigt.org/wp/cars-2019-tutorial/ Deep learning and computer vision for real-time procedure annotation], CARS 2019, Rennes, France

----

*May 1-3: [https://discourse.slicer.org/t/perklab-bootcamp-2019/5792 PerkLab 3-day bootcamp], by Laboratory of Percutaneous Surgery at Queen’s University, Canada
*May 16-17:[https://rcc.harvard.edu/event/IACIT International Conference in Innovative Teaching: Improving the University for Future Generations]

----

*April 23: [[Guido_Gerig_2019_Seminar | Prof. Guido Gerig Seminar]], Surgical Planning Laboratory, Boston, MA

----

*March 12-14: [https://discourse.slicer.org/t/a-free-biomedical-image-analysis-and-visualization-3-day-course-march-12-14-in-carrboro-nc Biomedical Image Analysis and Visualization 3-day Course], by Kitware, North Carolina, USA

----

*January 30: [[MacBioIDI_tutorial|3D Slicer tutorial for African collaborators of the MacBioIDI project]]
*January 28-February 1: [https://na-mic.github.io/ProjectWeek/PW30_2019_GranCanaria 30th Project Week], Las Palmas, Gran Canaria

===2018===

*December 13: [[Dakar_2018|3D Slicer Seminar, Dakar, Senegal]]

----

*November 25-30: [[RSNA_2018| 104th Annual Meeting of the Radiological Society of North America (RSNA 2018)]], Chicago, IL

----

*October 21: [https://bwhbulletin.org/2018/10/04/the-open-anatomy-project/ The Open Anatomy Project’, BRIght Future Prize Contest Presentation, Brigham Research Institute] Brigham and Women’s Hospital, Boston, MA
*October 9: [[HMS_2018 | 3D Visualization tutorial, Harvard Medical School, Boston, MA]]
*October 7: [http://ncigt.org/igt10 10th NCIGT and NIH Image Guided Therapy Workshop], Boston Marriott Long Wharf Hotel, 296 State Street, Boston, MA
*October 5-6: [http://imri2018.org/ 12th Interventional MRI Symposium (iMRI 2018)], Boston Marriott Long Wharf Hotel, 296 State Street, Boston, MA

----

*September 26-28:[[ESSFN_2018 | XXIIIrd Congress of the European Society of Stereotactic and Functional Neurosurgery (ESSFN 2018), Edinburgh, Scotland]]
*September 25: [[HMS_2018 | 3D Visualization tutorial, Harvard Medical School, Boston, MA]]
*September 16-20: [http://www.miccai2018.org/ Medical Image Computing and Computer Assisted Intervention (MICCAI 2018)], Granada, Spain
*September 16: [https://blog.kitware.com/events/pocus-miccai2018/ Point-Of-Care Ultrasound Workshop, MICCAI 2018], Granada, Spain
*September 11:[[HMS_2018 | 3D Visualization tutorial, Harvard Medical School, Boston, MA]]
*September 6:[[HMS_2018 | 3D Visualization tutorial, Harvard Medical School, Boston, MA]]

----

*July 16-20: [https://na-mic.github.io/ProjectWeek/PW29_2018_London_Canada 29th Project Week], London, Ontario

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*June 25-29: [https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria 28th Project Week], Gran Canaria, Spain
*June 16-21: [http://ismrm.org/18m Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2018)], Paris, France
*June 12: [[BWH_Radiology_Residency_Research_Course_Seminar_2018|BWH Radiology Residency Research Course Seminar]], Boston, MA

----

*May 30: [[ICM_2018| 3D Slicer Training Workshop]], Brain and Spine Institute, Paris, France

----

*March 23: [[KarinWårdell_Visit_2018 | Prof. Karin Wårdell Visit]],Surgical Planning Laboratory, Boston, MA
*March 5-7: [[LasPalmas_2018 | 3D Slicer Training Workshop]], Las Palmas de Gran Canaria, Spain

----

*February 8-9: [[Linköping_2018 | 3rd DBS and 9th Neuro‐Engineering Workshop]], Linköping, Sweden

----

*January 8-12: [https://na-mic.github.io/ProjectWeek/PW27_2018_Boston/ 27th Project Week], MIT, Cambridge, MA

===2017===

*November 26-December 1: [[RSNA_2017| 103rd Annual Meeting of the Radiological Society of North America, RSNA 2017]], Chicago, IL
*November 20: [[HST.583_2017_Brain_Mapping_for_Neurosurgery | Harvard-MIT Division of Health Science and Technology HST.583 Lab - Brain Mapping for Neurosurgery]], MIT, Cambridge, MA

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*October 24: [[ICUBE_2017| 3D Slicer Seminar]], iCube Laboratory, University of Strasbourg, France

----

*September 28: [[Csaba_visit | Csaba Pinter invited presentation]], Congress of Audiology, Szeged, Hungary
*September 19: [[BWH_Radiology_Residency_Research_Course_Seminar|BWH Radiology Residency Research Course Seminar]]
*September 18: [[HST.583_2017 | Harvard-MIT Division of Science Health and Technology HST.583 Lab- The Life Cycle of Medical Imaging Data]], MIT, Cambridge, MA
*September 14: [[MICCAI2017_POCUS_Workshop| POCUS Workshop, MICCAI 2017]], Quebec City, Quebec, Canada
*September 10: [http://qiicr.org QIICR] organized [http://qiicr.org/dicom4miccai DICOM4MICCAI] tutorial, [https://miccai2017.org MICCAI 2017], Quebec City, Quebec, Canada
*September 8-9: Greg Sharp invited presentation, [http://cbfm2017.com.br/ Brazilian Congress of Medical Physics], Ribeirão Preto, Brazil

----

*July 17-21: [http://wiki.imaging.robarts.ca/ 26th Project Week], Robarts Research Institute, London, ON, Canada

----

*June 26-30: [[2017_Summer_Project_Week|25th Project Week]], Catanzaro Lido, Calabria, Italy
*June 13: [[2017_Non_Profit_Summer_Camp|Healthy Girls Save the World Camp]], UNC-Chapel Hill, NC
*June 6: [[June_2017_BWH_Radiology_Resident_Education| BWH Radiology Resident Research Seminar]], Boston, MA

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*May 24: [[M-DBS_Workshop2017|M-DBS 2017 Workshop, ICM]], Paris, France

----

*April 22: [[ISMRM_2017| Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM 2017)]], Honolulu, HI

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*March 25: [[2017_IADR_Workshop|DCBIA Craniofacial Workshop]], 95th General Session & Exhibition of the IADR, San Francisco, CA
*March 14-15: [http://ncigt.org/igt9 9th NCIGT and NIH Image Guided Therapy Workshop], Bethesda, MD
*March 11-12: [[Hiroshima_2017|Seminar for Young Researchers]], Hiroshima, Japan

----

*February 1: [[2017_Universite_Catholique_Lille| 3D Slicer presentation]], Université Catholique de Lille, France

----

*January 12: [[2017_Tutorial_Contest| 2017 Tutorial Contest]], MIT, Cambridge, MA
*January 10: [[BWH_Radiology_Residents_Workshop|BWH Radiology Residents Workshop]], Boston, MA
*January 9-13: [[2017_Winter_Project_Week|Winter Project Week]], MIT, Cambridge, MA

===2016===

*November 27-December 2: [[RSNA_2016| 102nd Annual Meeting of the Radiological Society of North America, RSNA 2016]], Chicago, IL
*November 17: [[2016_BWH_Radiology_Resident_Education | Radiology Residents 3D Slicer Hands-on workshop]], Boston, MA

----

*October 21: [http://interactivemedical.org/imic2016/ Interactive Medical Image Computing (IMIC) Workshop], Athens, Greece
*October 17-21: [http://miccai.org/ MICCAI 2016], Athens, Greece
*October 7-8: [[Media:11thIMRI-Brochure-final.pdf| 11th Interventional MRI Symposium]], Baltimore, MD
**[http://www.hopkinscme.edu/CourseDetail.aspx/80038447 Registration]
**[https://easychair.org/conferences/?conf=imri2016 Abstract Submission]

----

*September 15: [[2016_BWH_Resident_Education | 3D Slicer seminar for BWH Radiology Residents]], Brigham and Women's Hospital, Boston, MA

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*August 31: [[2016_Beth_Israel_Training_Workshop | 3D Slicer Hands-on Training Workshop]], Beth Israel Deaconess Medical Center, Boston, MA

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*June 20-25: [[2016_Summer_Project_Week| '''Summer Project Week''']], Heidelberg, Germany
*June 8: [[2016_Beth_Israel_Psychiatry_Seminar | 3D Slicer Seminar]], Beth Israel Deaconess Medical Center, Boston, MA

----

*May 23-27: [https://docs.google.com/document/d/1BIQHLheqYhsfeHhCTVtid5bZMVywlo1UmeK6-ZmHeq8/edit Medical Image Webapp Software Hackfest], Boston, MA

----

*April 27: Andrey Fedorov invited presentation, [https://cancer.stonybrookmedicine.edu/2016_ResearchSymposium 2016 Gloria and Mark Snyder Symposium for Cancer Medicine], Stony Brook, NY ([https://dx.doi.org/10.6084/m9.figshare.3205939.v1 | slides])
*April 15: [[Mount_Sinai_Hospital_Workshop | 3D Slicer Workshop]], Mount Sinai Hospital, NYC, NY
*April 14: [[StonyBrook_Workshop | 3D Slicer Workshop]], Stony Brook University, Stony Brook, NY
*April 8-9: [[SPL25| SPL 25th Anniversary Celebration]], Harvard Medical School, Boston, MA
*April 5: Greg Sharp lecture ''3D Slicer for Radiotherapy Research'', [http://dsmf-symposium.dk/program.html Danish Society for Medical Physics Symposium], Copenhagen, Denmark

----

*March 15-16: [http://ncigt.org/8th-ncigt-and-nih-image-guided-therapy-workshop 8th NCIGT and NIH Image Guided Therapy Workshop], Bethesda, MD
*March 13: Ron Kikinis invited presentation at [http://www.ci4cc.org/events/spring2016 Cancer Informatics for Cancer Centers (CI4CC) Spring 2016 Symposium and workshop], Napa, CA (Workshop materials: http://qiicr.org/CI4CC-Spring2016-ASW)

----

*February 11: [[FAID_2016|ICM-MIT-Harvard workshop, French American Innovation Day]], MIT, Cambridge, MA

----

*January 26: [http://iactalks.iac.es/talks/view/865 Ron Kikinis' invited presentation, Instituto de Astrofísica de Canarias - IAC, "Tsunami in the Procedure Room, the Growing Challenge of Managing Data in Image Guided Interventions and Surgery"]
*January 14: [[CHB|3D Slicer Workshop]], Children's Hospital, Boston, MA
*January 7: [[Events:TutorialContestJanuary2016 |2016 Tutorial Contest]], MIT, Cambridge, MA
*January 4-8: [[2016_Winter_Project_Week|'''Winter Project Week''']], MIT, Cambridge, MA

===2015===

*December 14-18: [[Montevideo_Uruguay_2015| 3D Slicer and SlicerIGT]], Universidad de la República, Montevideo, Uruguay

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*November 29-December 4: [[RSNA_2015| 101th Annual Meeting of the Radiological Society of North America, RSNA 2015]], Chicago, IL
*November 26-28: [[SlicerCMFWorkshop_Italy2015 | Cranio Maxillo Facial imaging workshop using SlicerCMF]], Italy
*November 23: [[HST.583_2015_Brain_Mapping_for_Neurosurgery | Harvard-MIT Division of Health Science and Technology HST.583 Lab - Brain Mapping for Neurosurgery]]
*November 19: [[Brown_2015| 3D Slicer Workshop]], Brown University, Providence, RI
*November 16: [[MGH_2015 | 3D Slicer Tutorial]], MGH, Boston, MA

----

*October 19-21: [http://www.ci4cc.org/events/fall2015 Fall 2015 CI4CC Symposium and Workshop]: [https://goo.gl/MDq0u8 Quantitative Image Informatics for Cancer Research (QIICR) presentation by Andrey Fedorov], San Diego, CA
*October 9: [http://interactivemedical.org/imic2015/ MICCAI 2015 - Interactive MIC 2nd edition], Munich, Germany
*October 5: [http://projects.iq.harvard.edu/dtichallenge15/home MICCAI 2015 DTI Challenge Workshop - 5th edition], Munich, Germany

----

*September 14: [[HST.583_2015 | Harvard-MIT Division of Science Health and Technology HST.583 Lab- The Life Cycle of Medical Imaging Data]]
*September 1: [[Events:2015_Ron_visit|SPL Introduction and Slicer Workshop]], Szeged, Hungary

----

*August 29: Ron Kikinis Keynote Lecture "[[Media:2015-09-06-Tsunami.pptx|Tsunami in the Procedure Room]]: The Growing Challenge of Managing Data in Image-Guided Interventions and Surgery" at the [http://www.iccas.de/symposium/ ICCAS International Symposium on Computer-Assisted Surgery], Leipzig, Germany (the download is about 49MB)
*August 24-25: [[Brno_visit_2015| dMRI Collaboration with CEITEC]], Brno, Czech Republic
*August 17: Ron Kikinis presented the state of 3D Slicer to BISTI, Natcher Building, NIH, Bethesda, MD ([[Media:2015-11-11-Slicer-Status.pptx|download here, ~79MB]]).
*August 7-8: Steve Pieper presented 3D Slicer, [http://www.mbl.edu/imaging/escaping-flatland-workshop-2015/| Escaping Flatland: Imaging biological architecture and events in 3 dimensions], Woods Hole Marine Biology Laboratory. [http://videocenter.mbl.edu/videos/video/1123/ Video of the event] is available. Note that two feeds are available and the user can toggle between the live video and the screen.
*August 6: [[Slicer_WS_Morioka_2015| Slicer Workshop]], Morioka, Iwate, Japan

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*July 15: [http://aapm.org/meetings/2015AM/PRAbs.asp?mid=99&aid=27746 American Association for Medical Physics: Open Libraries for Research], Anaheim, CA

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*June 21-24: [[2015_Summer_Project_Week|'''Summer Project Week''']], Barcelona, Spain
*June 11: [[UNC_2015 | 3D Slicer Training Workshop for NeuroImaging]], University of North Carolina at Chapel Hill, NC
*June 8: [[BU_2015 | 3D Slicer Training Workshop for Radiologists]], Boston University School of Medicine, Boston, MA
*June 7: [[Autoseg_2015 | Automatic Segmentation Algorithm Workshop]], Toronto, Canada
*June 7: [[IUPESM_2015| Slicer RT Tutorial, World Congress on Medical Physics and Biomedical Engineering]], Toronto, Canada

----

*May 27: [http://qiicr.org QIICR] presentation and 3D Slicer demo at the annual meeting of the NCI [http://itcr.nci.nih.gov/ Informatics Technology for Cancer Research (ITCR)] project, UCSD, San Diego, CA

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*April 13-14: demonstration of 3D Slicer at the annual face-to-face meeting of the NCI Quantitative Imaging Network, Rockville, MD

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*March 30-31: 3D Slicer invited demonstrations at [http://www.ci4cc.org/events/spring2015 Cancer Informatics for Cancer Centers (CI4CC) Spring 2015 Symposium & Genomics Workshop], Bethesda, MD
*March 26: [[Shiga_2015_Workshop | 3D Slicer Workshop]], Shiga, Japan
*March 25-26: [[Shanghai_2015 | 3D Slicer Invited Workshop]], Shanghai, China
*March 24: [[Hangzhou_2015 | 3D Slicer Invited Workshop]], Hangzhou, China
*March 11: [[Construction and Superimposition of 3D Surface Models IADR 2015]], Boston, MA

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*February 27-28: [[2015_TWMU_Seminar| Medical Device Seminar]], Tokyo Women's Medical University, Tokyo, Japan
*February 19: [[Stanford 2015|3D Slicer invited tutorial]], Stanford University

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*January 22: [http://acoustic.univ-rennes1.fr/doku.php/mdbs2015 Deep Brain Stimulation Workshop], Rennes, France
*January 5-9: [[2015_Winter_Project_Week| '''Winter Project Week''']], Salt Lake City, UT

===2014===

*December 16-17: [[Moffitt_2014|3D Slicer Invited workshop]], Moffitt Cancer Center, Tampa, FL

----

*November 30-December 5: [[RSNA_2014| 100th Annual Meeting of the Radiological Society of North America, RSNA 2014]], Chicago, IL
*November 18-19: [[Iowa2014| 3D Slicer Workshop]], Iowa City, IA
*November 20: [[CMF_Workshop_Cleveland_2014| 3D Cranio Maxillo Facial workshop]], CWRU, Cleveland, OH

----

*October 27: [[Prof_Sugiyama_and_Dr_Oyama_visit | Prof. Sugiyama and Dr. Oyama visit at BWH]]
*October 18-22: [http://w3.cns.org/meetings/2014/ Annual Meeting of the Congress of Neurological Surgeons], Boston, MA
*October 10-11: [http://radiologie.uniklinikum-leipzig.de/radiologie.site,postext,imri,a_id,700.html 10th Interventional MRI Symposium], Leipzig, Germany
*October 4: [[Pretoria2014| 3D Slicer Workshop]], [http://www.pah.org.za/ Steve Biko Academic Hosptial] in Pretoria, South Africa

----

*September 18-19: 7th NCIGT and NIH Image Guided Therapy Workshop, Cambridge, MA
*September 18: [http://www.slicerigt.org/wp/miccai-2014-tutorial/ Building image-guidance systems from open-source components tutorial], MICCAI 2014, Cambridge, MA
*September 15: [[DBS_Meeting_2014 | Deep Brain Stimulation Meeting]], MICCAI 2014, Boston, MA
*September 14: [[DTI_Challenge_2014| DTI Tractography Challenge]], MICCAI 2014, Boston, MA
*September 14: [http://interactivemedical.org/imic2014/index.html IMIC 2014], MICCAI 2014, Boston, MA

----

*August 26-30: [http://www.slicerigt.org/wp/embc-2014-tutorial/ EMBC'14 Tutorial: Building image-guidance systems from open-source components], Chicago, IL
*August 5: [[AAPM 2014 | 3D Slicer User Group]] AAPM 2014, Austin, TX

----

*July 1: [[2014_Neurotrauma_Symposium| 32nd Annual Neurotrauma Symposium: S08 Breakout Session on Advances in Multimodal Imaging of TBI]] organized by John van Horn with scientific presentations by Guido Gerig and Andrei Irimia (all NA-MIC), San Francisco, CA

----

*June 26: [http://www.na-mic.org/Wiki/index.php/2014_Tutorial_Contest Slicer Tutorial Contest], MIT, Cambridge, MA
*June 23-27: [[2014_Summer_Project_Week| '''Summer Project Week''']], MIT, Cambridge, MA

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*April 15:[[Brown_University_Workshop | 3D Slicer workshop]], Brown University, Providence, RI

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*March 28: [http://slicer.kitware.com/midas3/download/item/133719/2014-QIN_F2F-Fedorov-QIICR_Slicer.pdf Slicer/QIICR presentation] Annual Face to face meeting of the Quantitative Imaging Network, NCI, Rockville, MD
*March 19: [[CEA_2014| Follow-up meeting on the use of Slicer]] Prof. Dhenain's team, CEA Paris, France
*March 10-14: [[Pichl_2014| Winter School for Medical Physics]], Pichl-Schladming, Austria
*March 6-10: [[ECR_2014| European Congress of Radiology]], Vienna, Austria

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*February 18-20: [[Second_Medical_Image_Registration_Retreat,_Puerto_Rico| Second Medical Image Registration Retreat]], San Juan, Puerto Rico
*February 16: [[SPIE_2014 | Grand Challenges Panel]], SPIE 2014, San Diego, CA
*February 14: [http://www.na-mic.org/Wiki/index.php/USC_2014 Slicer Training Workshop], Los Angeles, CA

----

*January 27-29: [http://www.na-mic.org/Wiki/index.php/TWMU_Visit_2014 Visit by Tokyo Women's Medical University and Japan National Cancer Center], SNR Lab, BWH, Boston, MA
*January 7: [http://wiki.na-mic.org/Wiki/index.php/2014_SLC_Training_Workshop 3D Slicer Training Workshop], Salt Lake City, UT
*January 6-10: [[AHM_2014| '''AHM, EAB''']], [[2014_Winter_Project_Week|'''Winter Project Week''']], Salt Lake City, UT
*January 4: [http://www.sci.utah.edu/cibcwksp2014.html Software Tools for Image Based Modeling, Simulation, and Visualization], Workshop, Salt Lake City, UT

===2013===

*December 17: [http://wiki.na-mic.org/Wiki/index.php/CEA_2013 MIRCEN/CEA Slicer event], Paris, France
*December 1-6: [[RSNA_2013| RSNA 2013]], Chicago, IL

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*November 20: [[CMF_Workshop_Cleveland_2013| 3D Cranio Maxillo Facial Workshop]], CWRU, Cleveland, OH

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*October 27-30:[[TWMU_Visit_2013| Visit by Tokyo Women's Medical University Visit]], SNR Lab, BWH
*October 22-23:[[QIICR_2013| QIICR brainstorming and kickoff meeting]], 1249 Boylston St., Boston, MA
*October 17: [[Brno_2013| 3D Slicer Workshop]], Brno, Czech Republic

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*September 30: [[Changchun_2013| 3D Slicer invited seminar]], Changchun, China
*September 29: [[Beijing_2013| 3D Slicer Invited Workshop, PLA Hospital]], Beijing, China
*September 26: [http://www.dkfz.de/en/mbi/ctk-miccai2013/index.html MICCAI 2013 CTK Tutorial], Nagoya, Japan
*September 22: [[MICCAI2013| MICCAI 2013 DTI Tractography Challenge on Peritumoral White Matter Anatomy for Neurosurgical Decision-Making]], Nagoya, Japan
*September 11: [[WFNS2013| Sonia Pujol's invited lectures, 15th WFNS World Congress of Neurosurgery]], Seoul, Korea

----

*August 5: [[AAPM 2013 | 3D Slicer User Group, AAPM 2013]], Indanapolis, IN
*August 1-2: [[BRAINS_CAMP| BRAINSCamp Workshop]], Iowa City, IA

----

*July 19: [[Dr.Dhenain's visit to the SPL, Boston, MA |Dr. Dhenain's visit to the SPL]], Boston, MA

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*June 26-29: [[CARS2013| 3D Slicer hands-on workshop on Image-Guided Therapy and joint Slicer/CTK/MITK Workshop]], CARS 2013, Heidelberg, Germany
*June 26: [http://tbi.ci.uchicago.edu/diffusion-mri-tbi-workshop Diffusion MRI in Traumatic Brain Injury 2013; Workshop on Diffusion MRI in Traumatic Brain Injury: Software Tools and International Shared Data Repository], Heidelberg, Germany
*June 17-21: '''[[2013_Summer_Project_Week|'''Summer Project Week''']]''', MIT, Cambridge, MA [[2013_Tutorial_Contest|Summer 2013 Tutorial Contest]]
*June 14: [[UAEM_Visit|Prof. Avila-Vilchis and Prof. Vilchis-Gonzales visiting the SPL]], Boston, MA
*June 14: [[BWH_2013| 3D Slicer Hands-on Workshop]], Surgical Planning Lab, 1249 Boylston St., Boston, MA

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*May 31: [[AAPM_New_England_Chapter_Summer_Meeting| Invited Lecture, AAPM Chapter New England Summer Meeting]], Portsmouth, NH
*May 24: [[Kitware_Course| 3D Slicer: Visualize and Analyze your datasets, Kitware Training Course,]] Lyon, France
*May 20-24: [http://www.commontk.org/index.php/CTK-Hackfest-May-2013 CTK Hackfest], Kingston, Ontario, Canada
*May 11: [http://www.youtube.com/watch?v=9t1V-Ro0Cak SlicerIGT hands-on demo], Science Rendezvous, Kingston, Ontario, Canada

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*April 22: [[2013_ISMRM_CardiacStudyGroup_CARMA|ISMRM 2013 Cardiac Study Group Tutorial]]: Slicer for segmentation and enhancement quantification in cardiac LGE-MRI. Salt Lake City, UT
*April 15: [[2013_Juntendo_University| DTI Challenge Presentation, Jutendo University, Tokyo, Japan]]
*April 10-11: [http://www.na-mic.org/Wiki/index.php/Iwate_2013_Training Slicer Ultrasound Workshop], Iwate, Japan
*April 9: [http://www.na-mic.org/Wiki/index.php/Tokyo_2013_Training Slicer Workshop], Tokyo, Japan
*April 8: [[Imaging_in_Neuroscience| Imaging in Neuroscience Course]], Boston

----

*March 21-23: [http://ncigt.org/igt6 6th NCIGT and NIH Image Guided Therapy Workshop] in Crystal City, VA
*March 11: [[CIR_visit_Vienna_Medical_Center | Slicer Lecture]], Computational Image Analysis and Radiology Laboratory, Medical University, Vienna, Austria
*March 11: [[SlicerRT_workshop | SlicerRT Workshop]], Medical University, Vienna, Austria
*March 8: [http://www.na-mic.org/Wiki/index.php/Autoseg_2013 Automatic Segmentation Algorithm Workshop], Boston, MA
*March 7-11: [http://www.na-mic.org/Wiki/index.php/ECR_2013 European Congress of Radiology], Vienna, Austria
*March 4-5: 3D Slicer is presented at the annual face-to-face meeting of the [http://imaging.cancer.gov/programsandresources/specializedinitiatives/qin NCI Quantitative Imaging Network] ([[Media:3DSlicer-NCI-QIN-F2F-March2013 poster Fedorov.ppt|poster]] and [[Media:3DSlicer-NCI-QIN-F2F-March2013 tool sharing slides Fedorov.ppt|slides]])
*March 4: [[2013-03-4- TWMU_Visit| Delegates from Research Administration Office, Tokyo Women's Medical University visits SNR Lab/NCIGT and AMIGO]]

----

*February 28-March 5: [[2013_Dr_Chen_Visit | Visit of Dr. Xiaolei Chen, PLA General Hospital, Beijing]], SPL
*February 22: [[2013-02-22 Dr. Takahashi's Visit to SNR Lab/NCIGT and AMIGO|Dr. Takahashi's Visit to SNR Lab/NCIGT and AMIGO]]
*February 14: [[2013-02-14-Slicer_Demo_at_Memorial_Sloan_Kettering_Cancer_Center | Demo of the Slicer segmentation and registration tools]], Memorial Sloan Kettering Cancer Center
*February 14: [[2013-02-14-Korean_Surgical_Robot_Research_Team_Visit | Surgical Navigation and Robotics Laboratory hosts a robotic surgery research group from Korea]]
*February 9-14: [http://www.na-mic.org/Wiki/index.php/SPIE_2013_DTI_Workshop SPIE 2013 Diffusion Tensor Imaging Course], Orlando, FL
*February 7: [[2013-02-07-MGH_Slicer_user_meeting | Slicer user/developer meeting with the MGH user group]]

----

*January 31: [[GolbyLabMeeting_DTIChallenge | MICCAI DTI Challenge Presentation]], Golby Lab Meeting, Brigham and Women's Hospital, Boston, MA
*January 28: [http://www.assembla.com/wiki/show/slicerrt/20130128_slicer_matlab_personal_cloud_meeting Slicer Matlab personal cloud meeting]
*January 7-11: '''[[AHM_2013|AHM, EAB, Winter Project Week]]''', Salt Lake City, UT

===2012===

*December 10: [[ PNL_2012 | Psychiatry NeuroImaging Laboratory Slicer4 Training Workshop]]
*December 3: [[HST_2012 | Harvard-MIT Division of Health Science and Technology - Diffusion Tensor Imaging Course]]

----

*November 25-30: [[RSNA_2012 | 98th Annual Meeting of the Radiological Society of North America, RSNA 2012]], Chicago, IL
*November 14: [[CMF_Workshop_Cleveland_2012| 3D Cranio Maxillo Facial Workshop]], CWRU, Cleveland, OH
*November 8-9: [http://meetings.nigms.nih.gov/index.cfm?event=general&ID=15208 NCBC showcase event in Washington DC]: [[Media:NA-MIC-Overview-2012-11.pdf|PDF of the overview slides]]

----

*October 8: [[Niguarda_Ospedale_Visit| Invited visit to the Epilepsy and Parkinson Surgery Centre "Claudio Munari" Ospedale Niguarda "Ca' Granda"]], Milan, Italy
*October 1: [[DTI_Tractography_Challenge_MICCAI_2012| DTI Tractography Challenge, MICCAI 2012, Nice, France]]
*October 1: [http://www.sci.utah.edu/stia2012-home.html 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12]), MICCAI 2012, Nice, France

----

*September 25-26: [[Pieper-MeVis-2012-09| Steve Pieper visited MeVis]]
*September 21: [http://www.ncigt.org/pages/IGT_Workshop_2012 5th NCIGT and NIH Image Guided Therapy Workshop], Boston, MA
*September 20: [[DrShekhar_Visit_Sep_2012|Dr. Raj Shekhar's visit to NCIGT]]
*September 12: [[Universidad Autonoma del Estado de Mexico Symposium | 3D Slicer Invited Lecture]], First Symposium on Medical Bioengineering, Universidad Autónoma del Estado de México, Mexico City, Mexico
*September 10: [[HST_583_2012| Harvard-MIT Division of Science Health and Technology HST.583 - Cing Analysis Lab]]

----

*August 29: [[BU_Slicer4_Training_Session| BU Slicer4 Training session]]
*August 20-21: [[Core 1 Retreat 2012|Core 1 Retreat 2012]] Park City, UT
*August 20: [[Slicer4.2Planning|Slicer 4.2 Planning meeting]]

----

*July 30: [[AAPM_2012 | 3D Slicer User Group]] AAPM, Charlotte, NC
*July 9-13: [http://www.commontk.org/index.php/CTK-Hackfest-Jul-2012 CTK Hackfest], Boston, MA

----

*June 30: [[CARS_2012 | NA-MIC IGT Workshop, CARS 2012]]
*June 18-22: [[2012_Summer_Project_Week|'''Summer Project Week''']], MIT, Cambridge, MA; [[2012_Tutorial_Contest| Summer 2012 Tutorial Contest]]

----

*May 21-22: [[Madrid-May-21-2012-Slicer-Workshop| Slicer workshop]] Madrid, Spain
*May 16: [http://www.ias.uwa.edu.au/lectures/kikinis| Public lecture, UWA], Perth, Australia
*May 14: [http://www.ias.uwa.edu.au/masterclass/kikinis Masterclass, UWA], Perth, Australia
*May 2: [http://www.hisa.org.au/events/event_details.asp?id=224112 Slicer Workshop], St. Vincent's Hospital, Fitzroy, Melbourne, Australia

----

*April 30-May 1: [http://www.cs.ucl.ac.uk/opensource_mia_ws_2012/ Slicer presentation], International Symposium on Biomedical Imaging (ISBI 2012)], Barcelona, Spain
*April 26: [http://www.hisa.org.au/events/event_details.asp?id=224111 Slicer Workshop], St. Vincent's Hospital, Sydney, Australia
*April 5: [[NEU-Medical-Physics-Seminar| Northeastern University Medical Physics Seminar, Gregory Sharp, Noby Hata]]

----

*March 20-21: [[Iowa-March-20-2012-Slicer-Workshop| Slicer Workshop in Iowa]]
*March 16: [[Particle_UNC_Utah| Particle training seminar, UNC]] Chapel Hill, NC
*March 5-6: Slicer booth presentation at the annual [https://wiki.nci.nih.gov/display/CIP/QIN Quantitative Imaging Network] face-to-face meeting; NCI, Washington DC

----

*February 29: [[Chapel-Hill-February-29-2012-Slicer-Talk| Slicer talk]], UNC
*February 27: [[Slicer-4.1| Plans for Slicer 4.1]]
*February 14: [[TWMU_Medtronics_OpenIGTLink| TWMU Open IGT Link - Stealth station Project, Kick-off]], Tokyo, Japan
*February 5: [[SPIE_2012_DTI_Workshop| SPIE 2012 DTI Course]], San Diego, CA

----

*January 9-13: [[AHM_2012|'''AHM, EAB''']], [[2012_Winter_Project_Week|'''Winter Project Week''']]''', Salt Lake City, UT'''

===2011===

*November 27-December 2: [[RSNA_2011 | 97th Annual Meeting of the Radiological Society of North America, RSNA 2011]], Chicago, IL
*November 14-18: [http://www.commontk.org/index.php/CTK-Hackfest-Nov-2011 CTK Hackfest], Sophia Antipolis, France
*November 11: [[SFN2011 Diffusion_Tensor_Imaging_Analysis Workshop |White Matter Exploration with Diffusion Tensor Imaging: Fundamentals and Perspectives - SFN 2011 Workshop]], Washington DC
*November 9: [[CMF_Workshop_Cleveland| 3D Cranio Maxillo Facial Workshop]], CWRU, Cleveland, OH
*November 3: [[2011_Slicer4-PreRSNAHackFest|Slicer4 PreRSNA Hackfest, Google hangouts]]
*November 2: [[BWH_Resident_Fair| 3D Slicer exhibit]], BWH Resident Fair, Boston, MA

----

*October 20: [[2011_Slicer4-Documentation-Sprint|Slicer4 Documentation Sprint]]
*October 14-15: [[2011_Algorithms_Retreat|Algorithm Core Retreat in New England]]
*October 12-13: [http://www.ncigt.org/pages/IGT_Workshop_2011 NCIGT Workshop], Washington DC

----

*September 28: [http://wiki.na-mic.org/Wiki/index.php/Event:Journal_Club_at_BWH Journal Club talk: Seyed-Ahmad Ahmadi]
*September 26-28: [[Events:2011_Hungary_Slicer_Training|Programming and End-User Training]] Szeged, Hungary
*September 18: [http://www.na-mic.org/Wiki/index.php/Events:_DTI_Tractography_Challenge_MICCAI_2011 DTI Tractography for Neurosurgical Planning: A Grand Challenge - MICCAI 2011 Workshop], Toronto, Canada

----

*August 4: [[Events:UBC_3D_Slicer_workshop_August_2011|UBC 3D Slicer Workshop]]
*August 2: [[Events:2011-08-02-AAPM-Slicer-Users-Group-Meeting|3D Slicer users group meeting]], AAPM annual meeting, Vancouver, BC, Canada]]

----

*July 19-21: [[Events:Slicer4-Review-07-2011 | Slicer 4 Review and Programming Sprint]], 1249 Boylston St., Boston, MA

----

*June 26-30: [[Events:3DSlicer_Booth_OHBM_2011 | 3D Slicer Booth, OHBM 2011]], Quebec City, Canada
*June 20-24: [[2011_Summer_Project_Week|'''Summer Project Week''']], MIT, Cambridge, MA
*June 15: [[Events:2011-06-15-Robarts-Slicer-Workshop|Slicer Workshop]], Biomedical Imaging Research Centre, University of Western Ontario, Canada
*June 13: [http://www.na-mic.org/Wiki/index.php/Summer_2011_Tutorial_Contest Summer 2011 Tutorial Contest] Submission dead-line.
*June 7: [[Events:2011-06-07-UCSF-Diffusion-Imaging-Workshop|UCSF Diffusion Imaging Workshop]], San Francisco

----

*May 5: [[Events:Computational_Methods_for_Radiation_Oncology|Computational Methods for Radiation Oncology]], Boston, MA

----

*April 27: [[Events:Slicer-Hands-On-Hiroshima-2011|Slicer and OpenIGTLink Hands-on Training]], Hiroshima, Japan
*April 22: [[Event:2011-04-UtahDBP-Training|Slicer Hands-on Training for the Utah Afib Team]]
*April 12: [[Event:2011-04-DiMaioTalk|Talk by Simon DiMaio "da Vinci and Beyond"]]
*April 5: [http://www.na-mic.org/Wiki/index.php/Events:_Johns_Hopkins_University_Seminar_April_2011 Training Workshop], Johns Hopkins University, Baltimore, MD

----

*March 16-18: [http://vizbi.org VIZBI 2011] in Cambridge, MA includes NAMIC-affiliated speakers and VTK tutorials.
*March 15-16: [http://catalyst.harvard.edu/services/ittm/module1.html Harvard Catalyst Biomarkers and Imaging in Drug Development course] includes [[Media:Pieper-Image Processing Strategies.pptx|a presentation on image processing approaches]] including NA-MIC and 3D Slicer.
*March 11: [[CTSC:Slicer_handson.021810| 3D Slicer Quantitative Medical Image Data Visualization Hands-On Workshop, Countway Library Room 403, (12-1pm)]]
*March 4: New [https://www.slicer.org/wiki/Slicer3:3.6_Final_Issues#DONE:_Issues_fixed_for_inclusion_in_Slicer_3.6.3_--_included_in_release_builds_of_March_4.2C_2011 Slicer3.6.3 Patch Release]

----

*February 19-23: [[Event:2011_Registration_Retreat|Registration Retreat]]
*February 18: [[CTSC:Slicer_handson.021810| 3D Slicer Quantitative Medical Image Data Visualization Hands-On Workshop]], Harvard Countway Library Room 403, (12-1pm)
*February 7-11: [http://www.commontk.org/index.php/CTK-Hackfest-Feb-2011 CTK Hackfest], Chapel Hill, NC
*February 4: [[Media:Fedorov-MGH-4Feb2011.pdf|Presentation of 3D Slicer for the MGH tumor measurement group]]

----

*January 10-14: '''[[AHM_2011|AHM, EAB]]''', '''[[2011_Winter_Project_Week|Winter Project Week]]''', Salt Lake City, UT

===2010===

*December 8: [[Events:Manchester-Dec-2010|Slicer Workshop]], Manchester, UK
*December 6-7: [[Events:Dundee-Dec-2010|Slicer Workshop]], Dundee, UK

----

*November 28-December 3: 96th Annual Meeting of the Radiological Society of North America, RSNA 2010, Chicago IL
**November 29: 2:30 pm-4:00 pm: [[Events:RSNA_2010| 3D Interactive Visualization of DICOM images with Slicer]], Chicago IL
**November 30: 10:30 am-12:00 pm: [[Events:RSNA_2010_CTSA| Quantitative Medical Imaging for Clinical Research and Practice]], Chicago IL
**December 2: 10:30 am-12:00 pm: [[Events:RSNA_2010_didactic| Lifecycle of an imaging biomarker: from validation to dissemination]], Chicago IL
*November 17-18: [[EngineeringRetreat2010|Engineering Core retreat]]
*November 12: [[MGH-NA-MIC-2010-Kickoff|MGH Kick-off meeting with Algorithms and Engineering]]
*November 8-9: [[2010-WestCoastMaster|West Coast Events]]
*November 5-6: [[AlgorithmRetreat2010|Algorithm Core retreat]]
*November 4-6: [[WidgetDesign2010|Widget Design Fiesta]], Kitware, South Carborro, NC
*November 4-5: [[Media:HataJJTalkNov2010.pdf|Robotics Presentation by Noby Hata]], Advances in Surgical Technologies Symposium, Celebration, FL

----

*October 25-26: [[Iowa-NA-MIC-2010-Kickoff| Iowa NA-MIC Kickoff meeting (UNC Core 1 visit)]]
*October 18:[[HST_583_2010_DTI_Course]] Diffusion Tensor Imaging Lab, Harvard MIT Division of Health Sciences and Technology

----

*September 24: [http://lcib.rutgers.edu/miccai2010/ Prostate Cancer Imaging Workshop] MICCAI 2010, Beijing, China
*September 23: [http://www.grand-challenge.org/index.php/MICCAI_2010_Workshop Workshop on Medical Image Analysis for the Clinic - A Grand Challenge]
*September 23: [[Beijing_2010_NA-MIC_Workshop|Slicer Tutorial]], Chinese PLA General Hospital in Beijing, China
*September 20: [[MICCAI_2010| NA-MIC Tutorial]], MICCAI 2010, Beijing, China
*September 13: [[HST_583_2010]] Diffusion Tensor Imaging Lab, Harvard MIT Division of Health Sciences and Technology

----

*August 12-13: [[QtAugust2010| Review of Qt port]]
*August 11: [[2010-Slicer-UNCDuke|Slicer training event]], UNC and Duke
*August 10: [[2010-Sato-talk|Research retreat of SNR Laboratory, followed by Dr. Yoshinobu Sato's talk]]
*August 5: [http://www.termine-meduniwien.at/mediafiles/38/Vortragsankuendigung_Prof_Ron_KIKINIS_05082010.pdf?sid=4f2a2b592fc7004cea39a34993b1d72d Presentation], AKH, Vienna, Austria

----

*July 1: [[2010-Slicer-StLouis|Slicer training event in St. Louis]]

----

*June 26: [[2010_CARS| NA-MIC Tutorial]], Computer Assisted Radiology and Surgery Conference in Geneva, Switzerland
*June 22" [http://www.na-mic.org/Wiki/index.php/Summer_2010_Tutorial_Contest Slicer Tutorial Contest], MIT, Cambridge, MA
*June 21-25: '''[[2010_Summer_Project_Week|Summer Project Week]]''', MIT, Cambridge, MA
*June 18: [[2010_CCA_Retreat|Clinical Computational Anatomy one day retreat]], Boston, MA

----

*May 20-23:[[cscbce_2010 | 5th Canadian Student Conference on Biomedical Computing and Engineering]]
*May 17-21: [http://www.commontk.org/index.php/CTK-Hackfest-May-2010 CTK Hackfest], Georgetown University
*May 12: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Registration Hands-On Workshop], Countway Library, Harvard Medical School, Boston, MA

----

*April 29: [[2010_Slicer36_Module_Cull|Review of modules to keep and cull for the 3.6 release]]
*April 28: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Visualization Hands-On Workshop]], Countway Library, Harvard Medical School, Boston, MA
*April 9-10: [[2010_University.of.Iowa| NA-MIC Training Workshop]], University of Iowa
*April 7: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Registration Hands-On Workshop], Countway Library, Harvard Medical School, Boston, MA

----

*March 24: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Visualization Hands-On Workshop], Countway Library, Harvard Medical School, Boston, MA
*March 19: [[U-Tokyo-visit-03192010| NCIGT Workshop with delegates from University of Tokyo]], Brigham and Women's Hospital, Boston, MA
*March 16: [[Events:Slicer-Hands-On-Tokyo-2010| Image Guided Therapy research using 3D Slicer - Hands-On Workshop]], Tokyo Women's Medical University, Tokyo, Japan (page in Japanese)
*March 10: [http://summit2010.amia.org/session-details NA-MIC Presentation], AMIA 2010
*March 9: Registration Clinic at [http://www.ncigt.org/pages/IGT_Workshop_2010 IGT Workshop], Arlington, VA
*March 7-10: Several NA-MIC personnel are participating in [[Events:CTK-Pre-Hackfest-2010|The CTK Pre-Hackfest]], Heidelberg, Germany. This meeting is a kick off that is expected to lead to active working meetings similar to the NA-MIC Project Week activities. The meeting is organized by the [http://commontk.org CTK] group.
*March 3: Steve Pieper presents on "Visualizing Anatomy and Function from MRI Data", [http://vizbi.org/2010/ the 2010 EMBO Workshop on Visualizing Biological Data]. NA-MIC Wiki page with [[VIZBI2010|Supplemental information from the VIZBI Conference]]. [http://www.nature.com/nmeth/journal/v7/n3s/index.html A special edition of Nature Methods] contains papers by the presenters.

----

*February 24: [[CTSC:Slicer_handson.022410| 3D Slicer Medical Image Data Visualization Hands-On Workshop]], Countway Library, Harvard Medical School, Boston, MA
*February 14: [[Events:CTK-Workshop-SanDiego-2010| 4th CTK Workshop]], SPIE, San Diego, CA
*February 9: [[Hata_BBN_visit|Hata BBN lecture]]

----

*January 4-8: '''[[AHM_2010|AHM, EAB]], '''[[2010_Winter_Project_Week|Winter Project Week]]''', Salt Lake City, UT'''

===2009===

*December 16-17: [[Dec-2009-SlicerAIMBrainstorming|Slicer Annotation and Markup Brainstorming]]
*December 15: [[Dec-2009-SlicerXND-DesignAndEngineering | Slicer/XND Preliminary Design & Engineering Planning Session]], WUSTL]]
*December 1: [[Events:RSNA_CTSA_2009| CTSA]], RSNA, Chicago, IL

----

*November 30: [[Events:RSNA_2009| 3-D Interactive Visualization of DICOM images with Slicer]], 95th Annual Meeting of the Radiological Society of North America, RSNA 2009, Chicago, IL
*November 29: [[Events:CTK-Workshop-Chicago-2009| 3rd CTK Workshop]], RSNA, Chicago, IL
*November 23: [[CTSC:Slicer_handson.112309| 3D Slicer Medical Image Data Visualization Hands-On Workshop]], Countway Library, Harvard Medical School, Boston, MA

----

*October 16: [[SFN2009 Slicer DTI Workshop | Mapping the Brain with Diffusion Tensor Imaging - A Hands-On Workshop]] [http://www.sfn.org/am2009/ Annual Meeting of the Society of Neuroscience], Chicago, IL
*October 9: [[Events:VT-NAMIC-NCBC-Collaboration-meeting-2009| VirginiaTech-NA-MIC collaboration progress update and planning meeting]], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA

----

*September 30: [[CTSC:ACRIN 09/30/09| Quantitative Imaging Workshop]] ACRIN fall meeting, Arlington, VA. Workshop in collaboration with Duke University and Johns Hopkins.
*September 25: [[Events:CTK-Workshop-September-2009| 2nd CTK Workshop]], Oxford UK
*September 24: [http://campwww.informatik.tu-muenchen.de/AMIARCS09/doku.php Augmented Environments for Medical Imaging including Augmented Reality in Computer-Aided Surgery (AMI ARCS)] MICCAI 2009 Workshop, London, UK. Demonstration of the [[DBP2:JHU:PerkStation | Perk Station]]. One-on-one tutorial available [mailto:lasso@cs.queensu.ca] on request.
*September 24: [http://smarts.lcsr.jhu.edu/CAI-Workshop-2009 Systems and Architectures for CAI] MICCAI 2009 Workshop, London, UK. Presentation of the [[DBP2:JHU:Roadmap | computer assisted intervention plug-in module for 3D Slicer]].
*September 24: [http://www.cs.ucl.ac.uk/miccai/dmfc Diffusion Modelling and the Fibre Cup] MICCAI 2009 Workshop, London, UK. Presentation of the DTI tractography validation pilot study.
*September 20-24: [http://wiki.na-mic.org/Wiki/index.php/2009_prostate_segmentation_challenge_MICCAI Prostate MRI Segmentation Challenge"], [http://grand-challenge2009.bigr.nl/index.php MICCAI 3D Segmentation in the clinic: a grand challenge].
*September 20: [http://lmi.bwh.harvard.edu/DMRI09 MICCAI 2009 Tutorial in London: Trends in High Angular Resolution Diffusion Imaging and Brain Tissue Modelling]
*September 20: [http://people.csail.mit.edu/pohl/pmmia09.html MICCAI 2009 Workshop: Probabilistic Models for Medical Image Analysis]
*September 20: MICCAI Workshop on Information theoretic similarity measures for image registration and segmentation
*September 16-17: [[Sept-2009-SlicerWidgetsBrainstorm|Brainstorming Session on next generation widgets for Slicer]]

----

*August 25: [[Events:Slicer_Workshop_August_2009|Slicer Workshop]] at [http://www.ibmisps-worldcongress.org/precongress.asp IBMISPS], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA
*August 21: [[Events:Registration_Summit_August_2009|Registration Meeting]], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA

----

*June 29: [[Events:CTK-Workshop-June-2009|Common Toolkit Workshop]], [http://www.dkfz.de/index.htm DKFZ, Heidelberg, Germany], hosted by [http://www.dkfz-heidelberg.de/en/mbi/index.html MBI].
*June 28: [http://www.biomedicalimaging.org/2009/Tutorial_04.asp Tutorial on Statistical Shape Analysis: Theory, Software, and Applications] at [http://www.biomedicalimaging.org/2009/default.asp ISBI 2009], Boston, MA.
*June 25: [[Events:TutorialContestJune2009 | Summer 2009 Tutorial Contest]]
*June 22-26: '''[[2009_Summer_Project_Week|The FIRST JOINT Summer Project Week]]''', MIT, Cambridge, MA
*June 17: [[CAOS2009_Slicer Workshop| Hands-On Workshop for Slicer IGT for Computer Aided Orthopeadic Surgery]]
*June 17: [[SlicerKyusyuJune2009Lecture| Lecture and demonstration, Image Guided Therapy of abdominal organs]], Noby Hata, Kysyu University Medical School, Kyusyu, Japan
*June 16: [[SlicerNagoyaJune2009Workshop| Workshop: How to make your custom IGT software using 3D Slicer]], Noby Hata, Nagoya Institute of Technology, Nagoya, Japan

----

*May 11-12: Core 1 PI meeting, Georgia Tech.
*May 8: [http://www.na-mic.org/Wiki/index.php/IMFAR2009 IMFAR 2009] - [http://www.autism-insar.org/index.php?option=com_content&task=view&id=36&Itemid=105 Presentation], 8th Annual International Meeting for Autism Research (IMFAR) in Chicago, IL] entitled Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data".
*May 8: Focus session on [[Volume Rendering and Loadable Modules: (Engineering & Usability Notes)]].
*May 4-5: Core 1 / Core 2 visit at Georgia Tech ([[May 4, 2009 Notes]], [[May 5, 2009 Notes]]).

----

*March 19: [[NCI Slicer Tutorial 03-19-2009|NCI Slicer tutorial,]] We had to reschedule! New date TBD!
*March 4: [[2009-03-04-Editor-Usability|Interactive Editor usability]] session in Ron's office

----

*February 24: 1249 Boylston: [https://www.slicer.org/wiki/Slicer3:Using3.4 Afternoon session to walk through common Slicer3.4 usage scenarios]
*February 24: BWH (location: Mellins Library) [[BWH_RadiologyResident_Training2009.1| NA-MIC 3D Slicer 3.2 Hands-On Workshop]]
*February 17-20: [[GWE_MiniRetreat|GWE Mini Retreat]], Boston, MA

----

*January 28-30: [https://www.slicer.org/wiki/Slicer3:MiniRetreat_January_28-30,2009 Slicer3 MiniRetreat]
*January 7: [[Events:TutorialContestJan2009| Winter 2009 Tutorial Contest]]
*January 5-9: '''[[AHM_2009| AHM,]] [[2009_EAB|EAB,]] [[2009_Winter_Project_Week|Winter Project Week]]''', Salt Lake City, UT

===2008===

*December 15-16: [[2008_Engineering_review_at_UNC|2008 Engineering review]], UNC, Chapel Hill
*Fall Semester 2008 Ibanez and Schroeder teach [http://public.kitware.com/OpenSourceSoftwarePractice/index.php/Main_Page Open Source Software Course], Rensselaer Polytechnic Institute
*December 8-12: [[2008_IGT_Project_Week|IGT Hands-on Project Week]], Boston, MA
*December 1: [[Events:RSNA2008| Tutorial]], RSNA, [http://rsna2008.rsna.org/ RSNA conference website]

----

*November 15-19: [[NA-MIC_Lupus_DBP_Worskhop_SFN2008|NA-MIC Lupus DBP White Matter Lesion Tutorial Release at 2008 Society for Neuroscience Annual Meeting]], Washington, DC
*November 18: [[Slicer3_Q&A_2008-11-18|Slicer Q&A Session]], BWH
*November 4: [[NA-MIC_3D_Visualization_Workshop_Massachussetts_General_Hospital|NA-MIC 3D Visualization Workshop]], Massachusetts General Hospital, Boston, MA

----

*October 30 : [[NA-MIC_3D_Visualization_Workshop_Brigham_and_Women's_Hospital| NA-MIC 3D Visualization Workshop]], Brigham and Women's Hospital, Boston, MA
*October 28: [[Harvard_Medical_Education_Day | Harvard Medical Education Day]], Boston, MA
*October 21: Nobuhiko Hata talk, entitled "Role of Image Processing, Navigation and Robots in MRI-guided Intervention", Bioimaging Sciences Division, Department of Radiology, Yale University School of Medicine, New Heaven, CT
*October 17: Nobuhiko Hata talk, entitled "Role of Image Processing, Navigation and Robots in MRI-guided Intervention", Robarts Institute, University of Western Ontario, Ontario, Canada
*October 15-16: [[Robarts_Training_Session | NA-MIC kit training event]], University of Western Ontario, London, Ontario, Canada
*October 7: [[Stefan_Baumann_visit | Stefan Baumann, Novartis]], 1249 Boylston St., Boston, MA
*October 7: [[Slicer_Day_October_2008|Slicer in the Fall]], 1249 Boylston St., Boston, MA

----

*September 10: [[Miccai_2008_Tutorial| Interfacing third-party software with the NA-MIC Kit]]: Tutorial at MICCAI 2008, New York City, NY
*September 10: [[Miccai_2008_Prostate_Workshop| Prostate image analysis and computer-assisted intervention]]: Workshop at MICCAI 2008, New York City, NY
*September 6: [[Miccai_2008_Systems_and_Architecture_Workshop| Systems & architecture for computer]] Workshop, MICCAI 2008, New York City, NY
*September 6: [[Miccai_2008_Segmentation_Workshop| Segmentation in the Clinic Challenge]]: Workshop at MICCAI 2008, New York City, NY
*September 3: [[Stanford_2008_Slicer_Workshop| Slicer Training]], Stanford University, CA

----

*August 21-22: [[Events:August2008XNATDesktop]], Visit by WashU Developers to Boston for Discussions of XND
*August 15: [[Events:NCI_Workshop_August_2008|August 15 2008, NA-MIC Workshop]], NCI
*August 13-14: [[Events:August_2008_NCBC_AHM|NCBC all hands meeting]]
*August 1: [[Events:August2008XNATDesktop| Planning TCon for XNAT Desktop Slicer interface]]

----

*July 30-August 1: [[2008_July_RFA_Experiment_Georgetown | RFA Interventional Experiment]], Georgetown University
*July 17: Steve Pieper presented NA-MIC and Slicer Module development at the [http://www.ipam.ucla.edu/programs/mbi2008/ IPAM MBI] Summer School [[Media:Pieper-UCLA-MBI-2008-07-17.ppt|(Slides)]]
*July 10 or 11: [[2008 July Slicer Introduction to Princess Margaret Hospital|Slicer Introduction]], Princess Margaret Hospital

----

*June 30: Steve Pieper presented at the [http://www.nitrc.org NITRC] all hands meeting.
*June 26: [[2008_June_IGT_Tumor_Growth_Model_Demo_SPL|Tumor Growth Model Software Demo]], SPL
*June 23-27: [[2008_Summer_Project_Week|'''Summer Project Week''']], MIT, Cambridge, MA
*June 23: [[2008_July_Slicer_IGT_VV_Link_Session_II|Slicer IGT Integration with Brainlab via VVLink]]
*June 16-17: [[2008 June Workshop Germany |Training Event]], Germany
*March - June: [[3D_Ultrasound_Module_in_Slicer_3|Slicer IGT training for graduate students at SJTU, Shanghai, China (every Thursday 10 am - noon)]]

----

*May 22-23: [[2008_Core_1_Core_3_mtg|Cores 1-3 Technical Meeting]], UT
*May 21: [[2008_Core_1_UNC_Utah_DTI| Core 1 UNC & Utah Technical Meeting about DTI tool development]], UT
*May 21: Kilian Pohl presented on segmentation tools in 3D Slicer at the [http://www.dkfz.de/en/mbi/index.html Division of Medical and Biological Informatics, DKFZ, Germany] ([[Media:Pohl dkfz 08.pdf| Slides]])
*May 12: [[Events:May12_2008_FirstMondaySeminar | First Monday Seminar Talk given by Drs. Ichiro Sakuma and Nassir Navab]], Brigham and Women's Hospital, Boston, MA
*May 8: [[Events:2008_05_08_Collaboration_UWA_Perth|Conference Call to Explore Collaboration with Adam Wittek]], UWA, Perth, Australia
*May 2: [[2008_5_2_Hata_Talk_U_Michigan | Nobuhiko Hata's talk]], Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI

----

*April 14: [https://www.slicer.org/wiki/Slicer3:Slicer3_Workshop_UNC_Chapel_Hill_2008#Preparation_for_the_Workshop Full day Slicer 3 Users and Plug-in Workshop] hosted by UNC-Chapel Hill faculty
*April 7: [[2008_David_Hawkes|2008 Dr. David Hawkes of UCL's visit to SPL]]

----

*March 31-April 11: [[2008_Platel_visit_from_TUE|2008 Dr. Platel's, IGT group leader from Technical University Eindhoven, to SPL]]
*March 24-27: [[2008_Engineering_review_at_Utah|2008 Engineering review]], UT
*March 19: [[Events:HST-563-March2008|Harvard-MIT Division of Health Sciences and Technology (HST), Lecture on Interventional MRI by Hata, Kikinis, HST 563]]
*March 12: Steve Pieper presented on the NA-MIC Kit and 3D Slicer, [http://www.cisst.org/wiki/Seminar_2008_03_12_3D_Slicer Johns Hopkins CISST] ([[Media:Pieper-JHU-seminar-2008-03-12.ppt| Slides]])
*March 10-11: [[IGT:March_2008_IGT_Workshop|IGT Workshop]], Rockville, MD
*Discussion of NA-MIC Kit for Cardiac EP with [http://www.bidmc.harvard.edu/cmr BIDMC].

----

*February 20: [https://www.slicer.org/wiki/Slicer3:Spring-2008-User-Training#Preparation_for_the_Workshop Spring 2008 Slicer3 User Training Workshop], SPL 1249 Boylston St, Boston, MA
*February 5-7: [https://www.slicer.org/wiki/Slicer3:MiniRetreat Slicer3 Mini-Retreat], Boston, MA

----

*January 7-11: '''[[AHM_2008| AHM,]] [[2008_EAB|EAB,]] [[2008_Winter_Project_Week|Winter Project Week]]''', Salt Lake City, UT

===2007===

*December 12-14: [[2007_December_Slicer_IGT_Programming|Slicer IGT Programming Event]]

----

*November 2: [http://www.insightsoftwareconsortium.org/wiki/index.php/2007_MICCAI_Open_Workshop Third Annual Open Source Workshop at MICCAI]

----

*October 16-17: [http://nbirn.net/about/current/ahm2007.shtm BIRN AHM] Query Atlas and Qdec interfaces in Slicer 3 presented at the BIRN AHM.
*October 14-20: [[2007_October_Collaboration_Visit_Robert_Israel|Robert Israel Collaboration Visit to the Surgical Planning Laboratory]]
**[http://wiki.na-mic.org/Wiki/index.php/Slicer3:Module:QueryAtlas See this page] for links to QueryAtlas slides, movies and example datasets.
**[http://wiki.na-mic.org/Wiki/index.php/Image:Slicer3QDEC_AHM2007.ppt See this page] for links to Qdec slides.
*October 1-2: [[SanteFe.Tractography.Conference | Contrasting Tractography Methods Conference]], Santa Fe, NM

----

*September 12: [[Engineering:September 12, 2007 | Engineering End of Summer Meeting]]
*September 11: [[GPU.Enabled.Tools.Meeting | GPU-enabling of NA-MIC Algorithms]], Boston, MA

----

*August 21: [[DBP2:UNC:Cortical Thickness Roadmap | UNC DBP Roadmap Tcon]]

----

*June 25-29: '''[[2007_Programming/Project_Week_MIT|Summer Project Week]]''', MIT, Cambridge, MA
*June 9: [[Training:OHBM2007_Training_Workshop|OHBM DTI Training Workshop, Chicago]]
*June 1: [[2007_Pohl_at_CCB|Pohl Talk]], CCB: A Hierarchical Segmentation Algorithm for MR Brain Images

----

*May 29-31: [[2007_Core_1_Meeting|Annual Core 1 Workshop]], Boston

----

*April 24: Steve Pieper presented Slicer3 and the NA-MIC Kit to the [http://gray.mgh.harvard.edu/content/index.php Medical Physics Group, MGH] [http://wiki.na-mic.org/Wiki/images/9/9c/Pieper-MGH-medical-physics-2007-04-24.ppt (slides)]

----

*March 29-30: [https://www.slicer.org/wiki/Slicer3:MiniRetreat_March_29%2C_30%2C_2007 Slicer3 Mini-Retreat], Boston

----

*February 21-22: Vince Calhoun from MIND is visiting at MIT and MGH [http://www.csail.mit.edu/events/eventcalendar/calendar.php?show=event&id=1349 Talk announecement]
*February 3 and 10: [http://mri.radiology.uiowa.edu/mediawiki/index.php/ITK_Programming_Short_Course_-_Feb_2007 Iowa ITK Programming Short Course]
*February 7-8: [https://www.slicer.org/wiki/Slicer3:MiniRetreat Slicer3 Mini-Retreat], Boston

----

*January 29: [[P41-2007-Joint-Retreat | CFIT NAC P41 2007 Joint Retreat]]
*January 16: [[2007-01-16 Core 5, Core 6 Summit]]
*January 10-12: '''[[AHM_2007|AHM, EAB, Winter Project Half Week]]''', Salt Lake City, UT

===2006===

*December 12: [https://www.slicer.org/wiki/Slicer3:Alpha-release Slicer3 retreat], Kitware, Inc.

----

*November 15: [https://www.slicer.org/wiki/Slicer3:Usability Usability session with Psychiatry NeuroImaging Laboratory], BWH
*November 7-8: [[2006_November_Meshing_Project_Visit| Meshing Collaborator Project Visit to BWH]]
*November 1: [[Training:User_Workshop_Fall_HCNR_2006| NA-MIC Training Workshop]], Harvard Center for Neurodegeneration and Repair, Boston

----

*October 26: [[Oct-26-2006-MIND-visit_Visiting_the_MIND_institute|New DBP MIND Institute Visit]]
*October 23-26: [http://www.nbirn.net/press/current/ahm2006.shtm <nowiki>| BIRN All Hands Meeting</nowiki>]
*October 19-20: [[IGT:October_2006_IGT_Workshop| NCIGT Workshop on Open System Architectures for Image-Guided Therapy]]
*October 17: [[Core1-3-meeting-2006|Coordination meeting]] between Core 1 and Core 3 to plan the specifics for the third and last year of the current DBP's
*October 1: [http://www.insightsoftwareconsortium.org/wiki/index.php/2006_MICCAI_Open_Workshop MICCAI_2006 Open Source Workshop], MICCAI 2006, Copenhagen, Denmark

----

*September 19-20: [[2006_September_Slicer3_Update| Slicer 3 Update Meeting]], Boston, MA
*September 14-15: We have been invited to participate in [http://usms.nist.gov/workshops/bioimaging.htm NIH Workshop on Standards in Change Measurement]. This workshop will potentially set the stage for additional workshops that focus on Image Guided Interventions and Open Source standards.
*September 6: [http://www.ibmisps.org/pdf/InformationparticipantsANGLAIS.pdf 2006 IBMISPS conference:] [[Media:Kikinis-IBMISPS-09-06-2006.ppt|talk]] by [[Media:Kikinis-FOSS.ppt|R. Kikinis on FOSS]] ([[2006 FOSS Abstract Kikinis]])

----

*July 19: [[Training:NLM_Workshop_2006| NA-MIC Training Workshop]], NLM
*July 17-19: [[NIH:_2006_All_NCBC_Meeting| All NCBC All Hands Meeting]], NLM
*July 13-14: [http://bsp.csie.nctu.edu.tw/lssa06/ 2nd IEEE-NLM International Life Science Systems and Applications Workshop, Lister Hill Auditorium, NIH, chaired by Stephen Wong, co-sponsored by IEEE, NLM, and NAMIC]
*July 2: Ron Kikinis [[Media:NA-MIC-Kit-07-01-2006.ppt| presentation]] (28MB ppt file) at the [http://www.future-cad.org/fcad/Docs/CFP_for_2nd_Int_Sympo_2006_ver3.2.pdf The 2nd International Symposium on Intelligent Assistance in Diagnosis of Multi-Dimensional Medical Images]

----

*June 26-30: '''[[2006_Programming/Project_Week_MIT|Summer Project Week]]''', MIT, Cambridge, MA
*June 8-9: [[Georgia_Tech_visit_to_UNC%2C_June_8-9|Georgia Tech visit to UNC: Shape Analysis Discussion]]
*June 5: [https://www.slicer.org/wiki/Slicer:Slicer3-June-5-2006-Retreat Slicer 3 Retreat]

----

*May 30: [http://www.cimit.org/forum/forum.html CIMIT Forum] with Steve Pieper and Luis Ibanez ([[Media:CIMIT-BIRN-update-2006-05-30.ppt| Steve's Slides]])([[Media:CIMIT-2006-IGSTK-InsightJournal.ppt| Luis' Slides]])
*May 26: [[Training:DTI_Workshop|UNC-Chapel Hill NA-MIC DTI Analysis Training Workshop]]
*May 23-24: [[Algorithms:Core1Visit_May06| NA-MIC Core 1 meeting]], UNC
*May 19: [[Slicer:StevePieper_RonKikinis_VisitToDartmouth_051906|Steve Pieper and Ron Kikinis Visit to Dartmouth]]
*May 15: [[DBP:Harvard:Collaboration:GTech#Progress|Delphine Nain]], Psychiatry NeuroImaging Laboratory

----

*April 27: [[Training:NIH_Workshop_2006|NA-MIC Training Workshop]], NIH
*April 24: [http://www.nimh.nih.gov/neuroinformatics/springagenda2006.cfm The Human Brain Project: Linking Within and Beyond] Natcher Conference Center, NIH Campus, Bethesda, Maryland: National Alliance for Medical Image Computing: Science & Technology of One National Center for Biomedical Computing [[Media:NA-MIC Kit revised.ppt| (this is a slightly modified version of the presentation)]]
*April 12-13: [[DBP:Harvard:Collaboration:Toronto|James Kennedy and Aristotle Voineskos]], Psychiatry NeuroImaging Laboratory
*April 10-11: [[Training:MIND_Institute_Workshop_Spring_2006| NA-MIC Training Workshop]], MIND Institute, NM
*April 10-11: Steve Pieper presented the NA-MIC Kit at [http://www.biomedicalimaging.org ISBI] 2006 on April 7, 2006 ([[Media:NA-MIC-2006-04-07-ISBI.ppt| Slides]], [[Media:Pieper-ISBI-2006-revised.pdf| Paper]]).
*April 3-4: [https://www.slicer.org/wiki/Slicer3:_Alpha1_Meeting Design Review and Work meeting on Slicer3 (alpha1 release)]

----

*February 22-24: [[Engineering:Slicer3_and_GPU| Meeting at Kitware to discuss Slicer3 (Thursday) and GPU programming (Friday)]]
*February 22: [[DBP:Sylvain_Doug_visit_Dartmouth_Feb_22_2006|Sylvain Bouix to visit Dartmouth]]
*February 20-23: [[IGT:Workshop_Feb_2006|IGT and FUS Workshops]]

----

*January 24: [[Training:User_Workshop_SPL_Winter_HCNR_2005| HCNR User Training Workshop]], Surgical Planning Laboratory, Boston, MA
*January 8-13: '''[[AHM_2006:AHM_2006| AHM, EAB, Winter Project Week]]''', Salt Lake City, UT

===2005===

*December 20: [[DBP:Marek_Kubicki_visit_Dartmouth_December_20_2005| Marek Kubicki visit to Dartmouth]]
*December 17: [[Collaboration:GT-UCI| Jim Fallon from UC Irvine visit to Georgia Tech for work on Rule-Based Segmentation]]
*December 14: [[DBP:Andy_Saykin_visit_BWH_December_14_2005|Andy Saykin and Group visit to Brigham and Women's Hospital]]
*December 1: [[DBP:Dartmouth_Harvard_Slicer_Training_12_01_2005| Dartmouth Group Slicer Training Followup at Harvard]], 1249 Boylston St., Boston, MA

----

*November 27-December 2: [http://rsna2005.rsna.org/rsna2005/V2005/index.cvn RSNA 2005, Chicago: Slicer Session], Open Source Imaging Tools Workshop
*November 18: [[DBP:Harvard:Collaboration:GTech#Progress|Ramsey Al-Hakim]], Psychiatry NeuroImaging Laboratory
*November 17-18: [[Collaboration:GT-Kitware|John Melonakos at Kitware -- Bayesian Classification Filter addition to ITK]]
*November 16: [[IGT:2005_Nov_16_IGT_Consortium_Kickoff| IGT Consortium Kickoff]]
*November 16: [[Collaboration:UNC-UCI|Jim Fallon and Martina from UC Irvine visit to UNC on DTI tools and clinical projects]]
*November 15: [[Engineering:Slicer3.0_November_15_2005| Slicer 3.0 Meeting]], Surgical Planning Laboratory, Boston, MA

----

*October 29: [[Dissemination:MICCAI_Workshop_2005|ISC and NA-MIC Workshop on Open Source Toolkits, Applications, and their uses in Medical Image Analysis]], MICCAI 2005, Palm Springs, CA
*October 29: Informal NA-MIC Lunch, MICCAI 2005, Palm Springs, CA
*October 20: [[2005_AHM:_3D_Slicer/Freesurfer_Workshop|Slicer Training Workshop, AHM BIRN]], San Diego, CA
*October 7: [[Collaboration:UNC-PNL|UNC visit]], Psychiatry NeuroImaging Laboratory
*October 5-7: [[Dissemination:EPFL_Workshop_2005| Advanced ITK and Slicer Workshop]], Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland

----

*September 30: [[Training:User_Workshop_SPL_Fall_2005|User Training Workshop]], Surgical Planning Laboratory, Boylston St, Boston, MA
*September 26-28: [[Engineering:Core_3_Programming_Week#1_Feedback|DBP and Engineering Session on Feedback from Programming Week Projects, and Planning the next 6-months]]
*September 16: [[Training:User_Workshop_MGH_Summer_2005| User Training Workshop]], MGH

----

*August 11: [[Dissemination:CSB2005|Invited Lecture about NA-MIC]]

----

*July 20: [[Collaboration:Workshop_July_20_2005|UNC visit of Georgia Tech for collaborative work on shape and DTI algorithms]]

----

*June 27-July 1: [[Engineering:Programmers_Week_Summer_2005| '''Summer Project Week''']], MIT, Cambridge, MA
*June 22-23: [[Dissemination:NCRR_NIBIB_PI_Meeting_June_22-23_2005|NCRR/NIBIB PI Meeting]]
*June 16-19: [[Collaboration:Workshop_June_16-19_2005|Georgia Tech visit of UC-Irvine for collaborative work on anatomically accurate algorithms.]]

----

*May 26-27: [[Dissemination:Workshop_May_26-27_2005|User Training and Dissemination Workshop]], Dartmouth, NH

----

*April 21-22: [[DBP:Andy_Saykin_visit_BWH_April_21_2005| Andy Saykin visit to Brigham and Women's Hospital and MIT]]

----

*March 25: University of Utah visit of Harvard VA for collaborative work on DTMRI.
*March 21-23: [[FBIRN:retreat2005|fBIRN Retreat in Irvine with User Tutorials for Slicer, Brains2 Wednesday on March 23]]

----

*February 20-22: [[AHM_2005:Main|'''The First All-Hands-Meeting and Programming Event''']], Salt Lake City, UT
*February 17-18: [[Dissemination:Workshop_Feb17-18_2005| Dissemination Workshop]], UCSD

----

*January 26: Slicer User Workshop at BWH: [https://www.slicer.org/wiki/Slicer:User_Workshop_Jan26 Information for Atendees]
*January 24-25: Dissemination Workshop [[Dissemination:Workshop_Jan24-25_Boston|Agenda]], [[Dissemination:Workshop_Jan2005_Interested_Attendee_List|List of Participants]], [[Talk:Dissemination:Workshop_Jan24-25_Boston_Feedback|Attendee Feedback]]
*January 17-18: [http://www.imaginggenetics.uci.edu First International Imaging Genetics Conference], Beckman Center of the National Academy of Sciences, Irvine, CA.

===2004===

*December 9-10: Dissemination Workshop, Surgical Planning Laboratory, BWH: [[Dissemination:Workshop_Dec9-10_Boston|Agenda]], [[Dissemination:Workshop_Dec9-10_Boston_Presentations|Presentations]], [[Dissemination:Workshop_Dec9:10_Attendees_List|List of Participants]], [[Dissemination:Workshop_Dec9:10_Summary|Summary]], [[Talk:Dissemination:Workshop_Dec9-10_Boston_Feedback|Attendee Feedback]]

----

*November 16: Dissemination Meeting: [[Dissemination:Kickoff_Agenda|Agenda]], [[Dissemination:Kickoff_Summary|Summary]]

----

*October 15: [[Kickoff:Main| NA-MIC Kickoff Meeting]]

Main Page

2019-11-22T19:43:20Z

Pieper:

__NOTOC__

[[Image:NIHlogo.png|100px]][[Image:NIHHHS-logo.png|60px]]

These wiki pages are used to curate meetings and events of interest to developers and users of open source software for medical image computing.

NA-MIC was founded as a multi-institutional, interdisciplinary team of computer scientists, software engineers, and medical investigators to develop computational tools for the analysis and visualization of medical image data. It was funded from 2004-2015 using a grant, U54 EB005149, from the NIBIB NIH HHS. NA-MIC created infrastructure and environment for the development of computational algorithms and open-source technologies, and created training and dissemination mechanisms for these tools to be distributed to the medical research community.

'''While NA-MIC itself is no longer a funded research effort, many research projects driven by NA-MIC technologies continue.'''

{| border="00" cellpadding="5" cellspacing="0" width="90%"
|[[Image:Slicer4Announcement-HiRes.png|400px|align:"top"]]
|-
|
Please visit the [[Events]] page to learn about meetings that to take place to continue biomedical research seeded by NA-MIC.

|-
|Slicer 4.10 released in November 2018. See the [https://www.slicer.org/wiki/Documentation/4.10/Announcements Announcement] for more information.
|}

Project Events

2019-11-22T14:47:02Z

Pieper:

__NOTOC__
= Introduction =

{| style="width:800px"
| [[Image:2016 Winter Project Week Final Day.JPG|left|800px|Participants in the 2015 winter Project Week.]]
|-
| style="text-align: center; color: #3366ff;"|'''[[2016_Winter_Project_Week|Participants at the 2016 Winter Event]]'''
|-
|
|-
|
|-
|'''What?''' The Project Week is a week-long hands on activity in which medical image computing researchers create solutions using the open source image computing platform, [http://www.slicer.org 3D Slicer], and [http://www.vtk.org VTK], [http://www.itk.org ITK], and [http://www.cmake.org CMake] libraries. Participants work collaboratively on solutions that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conferences and workshops where the primary focus is to report results, the objective of the Project Week is to provide a venue for creators of medical image computing open-source software creators to collaboratively work.

'''When, where, how much?''' Twice a year - June in Europe, and January at MIT. Ad-hoc meetings are added occasionally. The registration fee is approximately 350 (USD or Euro), and is used to cover coffee and food.

'''How does it work?''' Weekly videoconferences for preparation begin 8-12 weeks before an event. Potential participants propose projects during these meetings, and collaboratively create a list of projects that are of mutual interest. The projects include platform work, algorithm development, and biomedical applications. Through the course of the meetings, each participant selects one or more project teams and develops goals for the week. The first day of the Project Week itself begins with a 2-hour in-person introduction to all projects and participants. The rest of the week consists of a mix of working sessions and breakout sessions on special topics, as decided by the participants during the preparatory meetings.

'''Who can attend?''' Project Weeks are open to all and publicly advertised. One-day participation is permitted for first-time attendees, but rest stay for the entire event. Email announcements are sent to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week Project Week mailing list].

'''Who should attend?''' This is harder to determine. Your best bet is to send an email (see below) or attend a preparatory videoconference.

'''What else?''' The Project Week series was founded in 2005, along with the [https://wiki.na-mic.org/ National Alliance for Medical Image Computing (NA-MIC)], which was chartered by the NIH to build a computational infrastructure for biomedical research. Today, Project Week has become one of the major events in the calendars of several NIH-funded Center efforts. Participants in Project Week include [https://projects.iq.harvard.edu/nac NAC], [http://ncigt.org NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process OCAIRO]. As of 2014, Project Week is also a MICCAI endorsed event.

'''Who to contact?''' Project Weeks are led by tkapur at bwh.harvard.edu [http://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD], who is happy to tell you more about them.
|}

__NOTOC__
=Upcoming Project Weeks=

{|
|| [[Image:PW33.png|thumb|left|200px|[https://na-mic.org/wiki/https://na-mic.org/wiki/Project_Week_33 Project Event 33]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_33 2020 January: Project Event 33]===
The '''33rd Project Event''' will be held on Jan 20-24, 2020 in Las Palmas, Gran Canaria.
|}

{|
|| [[Image:PW34.png|thumb|left|200px|[https://na-mic.org/wiki/https://na-mic.org/wiki/Project_Week_34 Project Event 34]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_34 2020 June: Project Event 34]===
The '''34nd Project Event''' will be held on June 22-26, 2020 at MIT, cambridge, MA..
|}
----

=Past Project Weeks=
{|
|| [[Image:BronchoscopeLocalizationFromDepthMaps.jpg|thumb|left|200px|[https://projectweek.na-mic.org/PW32_2019_London_Canada/Projects/BronchoscopeLocalizationFromDepthMaps Bronchoscope Localization From Depth Maps]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_32 2019 July: Project Event 32]===
The '''32nd Project Event''' was held on July 15-19, 2019 at the Robarts Research Institute, London, ON, Canada.
|}

{|
|| [[Image:OpenAnatomyExportModule.png|thumb|left|200px|[https://projectweek.na-mic.org/PW31_2019_Boston/Projects/glTFExport/ Export models to glTF file]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_31 2019 June: Project Event 31]===
The '''31th Project Event''' was held on June 24-28, 2019 at MIT.
|}

{|
|| [[Image:ImageOrientationMarkerSymbol_Result.png|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW30_2019_GranCanaria/Projects/UltrasoundSimulatorTraining/ Ultrasound Simulator Training]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW30_2019_GranCanaria 2019 January: Project Event 30]===
The '''30th Project Event''' was held on January 28-February 1, 2019 in Las Palmas, Gran Canaria.
|}

{|
|| [[Image:MitralValveSegmenter.png|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW29_2018_London_Canada/Projects/SlicerMitralValve/ Mitral Valve Modelling]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW29_2018_London_Canada 2018 July: Project Event 29]===
The '''29th Project Event''' was held on July 16-20, 2018 at the Robarts Research Institute, London, ON, Canada. [https://na-mic.org/wiki/Project_Week_29 More...]
|}

{|
|| [[Image:SegmentEditor_WholeHeart.PNG|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria/Projects/SegmentEditor/ Segment Editor Clinical Workflows]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria 2018 June: Project Event 28]===
The '''28th Project Event''' was held on June 25-29, 2018 at Gran Canaria, Spain. [https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria More...]
|}

{|
|| [[Image:ShapeRegressionExtension_UI.png|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW27_2018_Boston/Projects/SlicerSALT/ SlicerSALT Shape Analysis Toolbox]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW27_2018_Boston 2018 January: Project Event 27]===
The '''27th Project Event''' was held on January 8-12, 2018 at MIT. It recorded 72 registered attendees, who worked on 53 projects. [https://na-mic.github.io/ProjectWeek/PW27_2018_Boston More...]
|}

{|
|| [[Image:SPWW_Summer2017-example.jpg|thumb|left|200px|[http://wiki.imaging.robarts.ca/index.php/2017_Slicer_Western_Week/Laplace_equation_solver Example Project: Laplace Equation Solver]]]
| style="width:90%" |

=== [https://github.com/NA-MIC/ProjectWeek/tree/master/PW26_2017_London_Canada 2017 July: Project Event 26]===
The '''26th Project Event''' was held on July 17-21, 2017, at the Robarts Research Institute, London, ON, Canada. [http://wiki.imaging.robarts.ca/ More...]
|}

{|
|-
|[[Image:YeB_atlas_segmentation.jpg|thumb|left|200px|[[Project_Week_25/Surgical_Planning_In_Stereotaxy |Example Project: Surgical Planning In Stereotaxy]]]]
| style="width:90%" |

=== [[2017_Summer_Project_Week|2017 June: Project Event 25]]===
The '''25th Project Event''' was held on June 26-30, 2017, Catanzaro Lido, Calabria, Italy. It recorded 51 registered attendees, who worked on 29 projects. [[2017_Summer_Project_Week|More...]]
|}

{|
|-
|| [[Image:Needles_winter_project_week_2017.png|thumb|left|200px|[[2017_Winter_Project_Week/Needle_Segmentation_from_MRI |Example Project: Needle Segmentation from MRI]]]]
| style="width:90%" |

=== [[2017_Winter_Project_Week|2017 January: Project Event 24]]===
The '''24th Project Event''' was held on January 9-13, 2017, MIT, Cambridge, MA. It recorded 99 registered attendees, who worked on 55 projects. [[2017_Winter_Project_Week| More...]]
|}

{|
|-
|| [[Image:Brainstem contours 3D.png|thumb|left|200px|[[2016_Summer_Project_Week/Brain_atlas_combining_histology_and_MRI|Example Project: Brain atlas combining histology and MRI]]]]
| style="width:90%" |
=== [[2016_Summer_Project_Week|2016 June: Project Event 23]]===
The '''23rd Project Event''' was held on June 20-25, 2016, with one day break on June 21st for IPCAI, Heidelberg, Germany. It recorded 58 registered attendees, who worked on 32 projects. [[2016_Summer_Project_Week|More...]]
|}

{|
|-
|| [[Image:2016_Winter_Project_Week_Final_Day.JPG|thumb|left|200px|]]
| style="width:90%" |
=== [[2016_Winter_Project_Week|2016 January: Project Event 22]]===
The '''22th Project Event''' was held on January 4-8, 2016, MIT, Cambridge, MA. It recorded 77 registered attendees, who worked on 47 projects. These attendees represented 17 academic sites and 8 companies. [[2016_Winter_Project_Week|More...]]
|-
|| [[Image:RegResults.png|thumb|left|200px|[[2015_Refinement_Registration_Module|Example Project: Refinement Registration]]]]
| style="width:90%" |
=== [[2015_Summer_Project_Week|2015 June: Project Event 21]]===
The '''21st Project Event''' was held on June 21-24, in Barcelona, Spain. It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites and 7 companies. [[2015_Summer_Project_Week|More...]]
|-
|| [[Image:VR_RadiologyEnvironment.png|thumb|left|200px|[[VR_Radiology|Example Project: Virtual Reality Devices in Creating Environments for Diagnostic Radiology]]]]
| style="width:90%" |

=== [[2015_Winter_Project_Week|2015 January: Project Event 20]]===
The '''20th Project Event''' was held on January 5-9 in Salt Lake City, UT. t recorded 44 registered attendees, who worked on 42 projects. These attendees represented 11 academic sites and 4 companies. [[2015_Winter_Project_Week|More...]]
|-
|| [[Image:Projectweek-2014-06-23-IMG_0837.JPG|thumb|left|200px|]]
| style="width:90%" |
=== [[2014_Summer_Project_Week|2014 June: Project Event 19]]===
The '''19th Project Event''' was held on June 23-27 in Cambridge, MA. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites and 4 companies. [[2014_Summer_Project_Week|More...]]
|-
|| [[Image:LAsegment_GraphCut.png|thumb|left|200px|[[2014_Project_Week:GraphCutsLASegmentationModule|Example Project: LA Segmentation Module using Multi-column Graph Cuts]]]]
| style="width:90%" |
=== [[2014_Winter_Project_Week|2014 January: Project Event 18]]===
The '''18th Project Event''' was held on January 6-10 in Salt Lake City, UT, in conjunction with the [[AHM_2014|2014 NA-MIC AHM]]. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites and 4 companies. [[2014_Winter_Project_Week|More...]]
|-
|| [[Image:HD01-i.png|thumb|left|200px|[[Linear_Mixed-effects_shape_model_to_explore_Huntington%27s_Disease_Data|Example Project: Linear Mixed-effects Shape Model to Explore Huntington's Disease Data]]]]
| style="width:90%" |

=== [[2013_Summer_Project_Week|2013 June: Project Event 17]]===
The '''17th Project Event''' was held on June 17-21 in Cambridge, MA. It recorded 104 registered attendees, who worked on 75 projects. These attendees represented 22 academic sites and 13 companies. [[2013_Summer_Project_Week|More...]]
|-
|| [[Image:Diff_reg_TBI.png|thumb|left|200px|[[4D_DTI_tractography_in_Slicer_for_TBI|Example Project: Coregistration of Structural and Diffusion MRI towards 4D Modeling of TBI]]]]
| style="width:90%" |
=== [[AHM_2013|2013 January: Project Event 16]] ===
The '''16th Project Event''' was held on January 7-11 in Salt Lake City, UT, in conjunction with the [[AHM_2013|2013 NA-MIC AHM]]. It recorded 80 registered attendees, who worked on 54 projects. These attendees represented 17 academic sites and 4 companies. [[AHM_2013|More...]]
|-
|| [[Image:Tracts_colored_by_distance_to_arcuate.png|thumb|left|200px|[[2012_Summer_Project_Week:Intraoperative_Tract_Detection|Example Project: Intraoperative Tract Detection]]]]
| style="width:90%" |

=== [[2012_Summer_Project_Week|2012 June: Project Event 15]] ===
The '''15th Project Event''' was held on June 18-22 in Cambridge, MA. It recorded 88 registered attendees, who worked on 62 projects. These attendees represented 20 academic sites and 8 companies. [[2012_Summer_Project_Week|More...]]
|-
|| [[Image:AFibLongitudinalRegistration-PreOP-text.png|thumb|left|200px|[[2012_Winter_Project_Week:LAWallRegistration|Example Project: Longitudinal Alignment and Visualization of Left-Atrial Wall from DEMRI and MRA]]]]
| style="width:90%" |

=== [[2012_Winter_Project_Week|2012 January: Project Event 14]] ===
The '''14th Project Event''' was held on January 9-13 in Salt Lake City, UT, in conjunction with the [[AHM_2012|2012 NA-MIC AHM]]. It recorded 104 registered attendees, who worked on 57 projects. These attendees represented 19 academic sites and 6 companies. [[2012_Winter_Project_Week|More...]]
|-
|| [[Image:PW-Boston-2011-group-photo-IMG_0144.JPG|thumb|left|200px]]
| style="width:90%" |

=== [[2011_Summer_Project_Week|2011 June: Project Event 13]] ===
The '''13th Project Event''' was held on June 20-24 in Cambridge, MA. It recorded 104 registered attendees, who worked on 61 projects. These attendees represented 17 academic sites and 8 companies. [[2011_Summer_Project_Week|More...]]
|-
|| [[Image:KSlice1.png|thumb|left|200px|[[2011_Winter_Project_Week:MeshCurvolver|Example Projects: Surface Region Segmentation for Surgical Planning and Mapping]]]]
| style="width:90%" |

=== [[2011_Winter_Project_Week|2011 January: Project Event 12]] ===
The '''12th Project Event''' was held on January 10-14 in Salt Lake City, UT, in conjunction with the [[AHM_2011|2011 NA-MIC AHM]]. It recorded 106 registered attendees, who worked on 59 projects. These attendees represented 20 academic sites and 9 companies. [[2011_Winter_Project_Week|More...]]
|-
|| [[Image:2010_Summer_Project_Week_Group.JPG|thumb|left|200px|]]
| style="width:90%" |

=== [[2010_Summer_Project_Week|2010 June: Project Event 11]] ===
The '''11th Project Event''' was held on June 21-25 in Cambridge, MA. It recorded 126 registered attendees, who worked on 71 projects. These attendees represented 30 academic sites and 15 companies. [[2010_Summer_Project_Week|More...]]
|-
|| [[Image:Dicom-rt-import.png|thumb|left|200px|[[2010_Winter_Project_Week_DicomRT_Plugin|Example Project: DicomRT Plugin for Slicer]]]]
| style="width:90%" |

=== [[2010_Winter_Project_Week|2010 January: Project Event 10]] ===
The '''SECOND JOINT Project Event''' (and the tenth PROJECT EVENT) was held on January 4-8 in Salt Lake City, UT, in conjunction with the [[AHM_2010|2010 NA-MIC AHM]]. It recorded 107 registered attendees, who worked on 49 projects. These attendees represented 22 academic sites and 6 companies. [[2010_Winter_Project_Week|More...]]
|-
|| [[Image:2009_Project_Week_Group_Picture.jpg|thumb|left|200px|]]
| style="width:90%" |

=== [[2009_Summer_Project_Week|2009 June: Project Event 9]] ===
The '''FIRST JOINT Project Event''' (and the ninth PROJECT EVENT) was held on June 22-26 in Cambridge, MA. It recorded 134 registered attendees, who worked on 62 projects. These attendees represented 31 academic sites and 9 companies. [[2009_Summer_Project_Week|More...]]
|-
|| [[Image:Arctic_Logo.png| thumb|left|200px|[[UNC_ARCTIC_Tutorial|ARCTIC Tutorial: Winner of the First Tutorial Contest!]]]]
| style="width:90%" |

=== [[2009_Winter_Project_Week|2009 January: Project Event 8]] ===
The eighth NA-MIC Project event was held on January 5-9 in Salt Lake City, UT, in conjunction with the [[AHM_2009|2009 NA-MIC AHM]]. The AHM recorded 92 total attendees. During the project event, 52 projects were actively pursued by the participants. [[2009_Winter_Project_Week|More...]]
|-
|| [[Image:2008MITDay4-016.jpg|thumb|left|200px|]]
| style="width:90%" |

=== [[2008_Summer_Project_Week|2008 June: Project Event 7]]===
The seventh NA-MIC Project event was held on June 23-27 in Cambridge, MA. There were 114 registered participants for this meeting who worked on 58 projects. 14 of these projects were directly related to the NA-MIC DBPs, 19 to External Collaborations, and 15 to NA-MIC Infrastructure. [[2008_Summer_Project_Week| More...]]
|-
|| [[Image:VolumeRenderScene.png|thumb|left|200px|[[2008_Winter_Project_Week:OutOfCoreMRML| Example Project: MRML Support for Out of Core processing]]]]
| style="width:90%" |
=== [[2008_Winter_Project_Week|2008 January: Project Event 6]] ===
The sixth NA-MIC Project event was held on January 7-11 in Salt Lake City, UT, in conjunction with the [[AHM_2008| 2008 NA-MIC AHM]]. The AHM recorded 104 total attendees. During the project event, 38 projects were actively pursued by the participants. [[2008_Winter_Project_Week|More...]]
|-
||[[Image:Mit.jpg|thumb|200px|left|Picture of the event taken by Jeffrey Hawley]]
| style="width:90%" |

=== [[2007_Programming/Project_Week_MIT|2007 June: Project Event 5]] ===
The fifth NA-MIC Project event was concluded on June 29 in Cambridge, MA. This was the largest hands-on project event in the three year history of NA-MIC with 41 active projects and peak attendance of 90. Of the 85 registered attendees, 35 were NA-MIC participants, 48 external collaborators, and 2 representatives from the External Advisory Board and the NIH. The external collaborators were from 13 Institutions. [[2007_Programming/Project_Week_MIT|More...]]
|-
||[[Image:Stochastic_Tractography.jpg|thumb|200px|left|[[Projects:DTIStochasticTractography|Example Project: Stochastic Tractography]]]]
| style="width:90%" |
=== [[2007_Project_Half_Week|2007 January: Project Event 4]] ===
This fourth NA-MIC project event was successfully concluded on January 12 in Salt Lake City, UT, in conjunction with the [[AHM_2007|2007 NA-MIC AHM]]. The AHM recorded 96 total attendees, 56 of whom were NA-MIC participants, 32 were collaborators, and 8 represented the EAB and the NIH. During the project event, 38 projects were actively pursued by the participants. [[2007_Project_Half_Week|More...]]
|-
||[[Image:False_Discovery_Rate_for_Shape_Analysis.jpg|thumb|200px|left|[[Projects:LocalStatisticalAnalysisViaPermutationTests|Example Project: False Discovery Rate for Shape Analysis]]]]
| style="width:90%" |

=== [[2006_Programming/Project_Week_MIT|2006 June: Project Event 3]] ===
The third NA-MIC Project event was successfully concluded on June 30 in Cambridge, MA. It recorded 56 attendees, 38 of whom were NA-MIC participants and 18 were collaborators. During the project event, 22 projects were actively pursued by the participants. [[Engineering:2006_Project_Week_Results|More...]]
|-
||[[Image:DLPFC_Segmentation.jpg|thumb|200px|left|[[Projects:RuleBasedSegmentation|Example Project: Rule Based DLPFC Segmentation]]]]
| style="width:90%" |

=== [[Engineering:Programmers_Half_Week_Jan_2006|2006 January: Project Event 2]] ===
The second NA-MIC project event was successfully concluded on January 13 in Salt Lake City, UT, in conjunction with the [[AHM_2006:AHM_2006|2006 NA-MIC AHM]]. The AHM recorded 85 total attendees, 52 of whom attended this event. During the project event, 24 projects were actively pursued by the participants. [[Engineering:Programmers_Half_Week_Jan_2006|More...]]
|-
||[[Image:Slicer_Architecture_Discussion_Group.jpg|thumb|200px|left|Slicer Re-architecture Discussion Group]]
| style="width:90%" |

=== [[Engineering:Programmers_Week_Summer_2005|2005 June: Project Event 1]] ===
The first NA-MIC Programming Week was successfully concluded on July 1 in Cambridge, MA. It recorded 44 attendees who worked actively on 15 projects. [[Engineering:2005_Programming_Week_Results|More...]]
|}

Project Events

2019-11-22T14:46:10Z

Pieper:

__NOTOC__
= Introduction =

{| style="width:800px"
| [[Image:2016 Winter Project Week Final Day.JPG|left|800px|Participants in the 2015 winter Project Week.]]
|-
| style="text-align: center; color: #3366ff;"|'''[[2016_Winter_Project_Week|Participants at the 2016 Winter Event]]'''
|-
|
|-
|
|-
|'''What?''' The Project Week is a week-long hands on activity in which medical image computing researchers create solutions using the open source image computing platform, [http://www.slicer.org 3D Slicer], and [http://www.vtk.org VTK], [http://www.itk.org ITK], and [http://www.cmake.org CMake] libraries. Participants work collaboratively on solutions that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conferences and workshops where the primary focus is to report results, the objective of the Project Week is to provide a venue for creators of medical image computing open-source software creators to collaboratively work.

'''When, where, how much?''' Twice a year - June in Europe, and January at MIT. Ad-hoc meetings are added occasionally. The registration fee is approximately 350 (USD or Euro), and is used to cover coffee and food.

'''How does it work?''' Weekly videoconferences for preparation begin 8-12 weeks before an event. Potential participants propose projects during these meetings, and collaboratively create a list of projects that are of mutual interest. The projects include platform work, algorithm development, and biomedical applications. Through the course of the meetings, each participant selects one or more project teams and develops goals for the week. The first day of the Project Week itself begins with a 2-hour in-person introduction to all projects and participants. The rest of the week consists of a mix of working sessions and breakout sessions on special topics, as decided by the participants during the preparatory meetings.

'''Who can attend?''' Project Weeks are open to all and publicly advertised. One-day participation is permitted for first-time attendees, but rest stay for the entire event. Email announcements are sent to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week Project Week mailing list].

'''Who should attend?''' This is harder to determine. Your best bet is to send an email (see below) or attend a preparatory videoconference.

'''What else?''' The Project Week series was founded in 2005, along with the [https://wiki.na-mic.org/ National Alliance for Medical Image Computing (NA-MIC)], which was chartered by the NIH to build a computational infrastructure for biomedical research. Today, Project Week has become one of the major events in the calendars of several NIH-funded Center efforts. Participants in Project Week include [https://projects.iq.harvard.edu/nac NAC], [http://ncigt.org NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process OCAIRO]. As of 2014, Project Week is also a MICCAI endorsed event.

'''Who to contact?''' Project Weeks are led by tkapur at bwh.harvard.edu Tina Kapur, PhD, who is happy to tell you more about them.
|}

__NOTOC__
=Upcoming Project Weeks=

{|
|| [[Image:PW33.png|thumb|left|200px|[https://na-mic.org/wiki/https://na-mic.org/wiki/Project_Week_33 Project Event 33]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_33 2020 January: Project Event 33]===
The '''33rd Project Event''' will be held on Jan 20-24, 2020 in Las Palmas, Gran Canaria.
|}

{|
|| [[Image:PW34.png|thumb|left|200px|[https://na-mic.org/wiki/https://na-mic.org/wiki/Project_Week_34 Project Event 34]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_34 2020 June: Project Event 34]===
The '''34nd Project Event''' will be held on June 22-26, 2020 at MIT, cambridge, MA..
|}
----

=Past Project Weeks=
{|
|| [[Image:BronchoscopeLocalizationFromDepthMaps.jpg|thumb|left|200px|[https://projectweek.na-mic.org/PW32_2019_London_Canada/Projects/BronchoscopeLocalizationFromDepthMaps Bronchoscope Localization From Depth Maps]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_32 2019 July: Project Event 32]===
The '''32nd Project Event''' was held on July 15-19, 2019 at the Robarts Research Institute, London, ON, Canada.
|}

{|
|| [[Image:OpenAnatomyExportModule.png|thumb|left|200px|[https://projectweek.na-mic.org/PW31_2019_Boston/Projects/glTFExport/ Export models to glTF file]]]
| style="width:90%" |

=== [https://na-mic.org/wiki/Project_Week_31 2019 June: Project Event 31]===
The '''31th Project Event''' was held on June 24-28, 2019 at MIT.
|}

{|
|| [[Image:ImageOrientationMarkerSymbol_Result.png|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW30_2019_GranCanaria/Projects/UltrasoundSimulatorTraining/ Ultrasound Simulator Training]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW30_2019_GranCanaria 2019 January: Project Event 30]===
The '''30th Project Event''' was held on January 28-February 1, 2019 in Las Palmas, Gran Canaria.
|}

{|
|| [[Image:MitralValveSegmenter.png|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW29_2018_London_Canada/Projects/SlicerMitralValve/ Mitral Valve Modelling]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW29_2018_London_Canada 2018 July: Project Event 29]===
The '''29th Project Event''' was held on July 16-20, 2018 at the Robarts Research Institute, London, ON, Canada. [https://na-mic.org/wiki/Project_Week_29 More...]
|}

{|
|| [[Image:SegmentEditor_WholeHeart.PNG|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria/Projects/SegmentEditor/ Segment Editor Clinical Workflows]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria 2018 June: Project Event 28]===
The '''28th Project Event''' was held on June 25-29, 2018 at Gran Canaria, Spain. [https://na-mic.github.io/ProjectWeek/PW28_2018_GranCanaria More...]
|}

{|
|| [[Image:ShapeRegressionExtension_UI.png|thumb|left|200px|[https://na-mic.github.io/ProjectWeek/PW27_2018_Boston/Projects/SlicerSALT/ SlicerSALT Shape Analysis Toolbox]]]
| style="width:90%" |

=== [https://na-mic.github.io/ProjectWeek/PW27_2018_Boston 2018 January: Project Event 27]===
The '''27th Project Event''' was held on January 8-12, 2018 at MIT. It recorded 72 registered attendees, who worked on 53 projects. [https://na-mic.github.io/ProjectWeek/PW27_2018_Boston More...]
|}

{|
|| [[Image:SPWW_Summer2017-example.jpg|thumb|left|200px|[http://wiki.imaging.robarts.ca/index.php/2017_Slicer_Western_Week/Laplace_equation_solver Example Project: Laplace Equation Solver]]]
| style="width:90%" |

=== [https://github.com/NA-MIC/ProjectWeek/tree/master/PW26_2017_London_Canada 2017 July: Project Event 26]===
The '''26th Project Event''' was held on July 17-21, 2017, at the Robarts Research Institute, London, ON, Canada. [http://wiki.imaging.robarts.ca/ More...]
|}

{|
|-
|[[Image:YeB_atlas_segmentation.jpg|thumb|left|200px|[[Project_Week_25/Surgical_Planning_In_Stereotaxy |Example Project: Surgical Planning In Stereotaxy]]]]
| style="width:90%" |

=== [[2017_Summer_Project_Week|2017 June: Project Event 25]]===
The '''25th Project Event''' was held on June 26-30, 2017, Catanzaro Lido, Calabria, Italy. It recorded 51 registered attendees, who worked on 29 projects. [[2017_Summer_Project_Week|More...]]
|}

{|
|-
|| [[Image:Needles_winter_project_week_2017.png|thumb|left|200px|[[2017_Winter_Project_Week/Needle_Segmentation_from_MRI |Example Project: Needle Segmentation from MRI]]]]
| style="width:90%" |

=== [[2017_Winter_Project_Week|2017 January: Project Event 24]]===
The '''24th Project Event''' was held on January 9-13, 2017, MIT, Cambridge, MA. It recorded 99 registered attendees, who worked on 55 projects. [[2017_Winter_Project_Week| More...]]
|}

{|
|-
|| [[Image:Brainstem contours 3D.png|thumb|left|200px|[[2016_Summer_Project_Week/Brain_atlas_combining_histology_and_MRI|Example Project: Brain atlas combining histology and MRI]]]]
| style="width:90%" |
=== [[2016_Summer_Project_Week|2016 June: Project Event 23]]===
The '''23rd Project Event''' was held on June 20-25, 2016, with one day break on June 21st for IPCAI, Heidelberg, Germany. It recorded 58 registered attendees, who worked on 32 projects. [[2016_Summer_Project_Week|More...]]
|}

{|
|-
|| [[Image:2016_Winter_Project_Week_Final_Day.JPG|thumb|left|200px|]]
| style="width:90%" |
=== [[2016_Winter_Project_Week|2016 January: Project Event 22]]===
The '''22th Project Event''' was held on January 4-8, 2016, MIT, Cambridge, MA. It recorded 77 registered attendees, who worked on 47 projects. These attendees represented 17 academic sites and 8 companies. [[2016_Winter_Project_Week|More...]]
|-
|| [[Image:RegResults.png|thumb|left|200px|[[2015_Refinement_Registration_Module|Example Project: Refinement Registration]]]]
| style="width:90%" |
=== [[2015_Summer_Project_Week|2015 June: Project Event 21]]===
The '''21st Project Event''' was held on June 21-24, in Barcelona, Spain. It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites and 7 companies. [[2015_Summer_Project_Week|More...]]
|-
|| [[Image:VR_RadiologyEnvironment.png|thumb|left|200px|[[VR_Radiology|Example Project: Virtual Reality Devices in Creating Environments for Diagnostic Radiology]]]]
| style="width:90%" |

=== [[2015_Winter_Project_Week|2015 January: Project Event 20]]===
The '''20th Project Event''' was held on January 5-9 in Salt Lake City, UT. t recorded 44 registered attendees, who worked on 42 projects. These attendees represented 11 academic sites and 4 companies. [[2015_Winter_Project_Week|More...]]
|-
|| [[Image:Projectweek-2014-06-23-IMG_0837.JPG|thumb|left|200px|]]
| style="width:90%" |
=== [[2014_Summer_Project_Week|2014 June: Project Event 19]]===
The '''19th Project Event''' was held on June 23-27 in Cambridge, MA. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites and 4 companies. [[2014_Summer_Project_Week|More...]]
|-
|| [[Image:LAsegment_GraphCut.png|thumb|left|200px|[[2014_Project_Week:GraphCutsLASegmentationModule|Example Project: LA Segmentation Module using Multi-column Graph Cuts]]]]
| style="width:90%" |
=== [[2014_Winter_Project_Week|2014 January: Project Event 18]]===
The '''18th Project Event''' was held on January 6-10 in Salt Lake City, UT, in conjunction with the [[AHM_2014|2014 NA-MIC AHM]]. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites and 4 companies. [[2014_Winter_Project_Week|More...]]
|-
|| [[Image:HD01-i.png|thumb|left|200px|[[Linear_Mixed-effects_shape_model_to_explore_Huntington%27s_Disease_Data|Example Project: Linear Mixed-effects Shape Model to Explore Huntington's Disease Data]]]]
| style="width:90%" |

=== [[2013_Summer_Project_Week|2013 June: Project Event 17]]===
The '''17th Project Event''' was held on June 17-21 in Cambridge, MA. It recorded 104 registered attendees, who worked on 75 projects. These attendees represented 22 academic sites and 13 companies. [[2013_Summer_Project_Week|More...]]
|-
|| [[Image:Diff_reg_TBI.png|thumb|left|200px|[[4D_DTI_tractography_in_Slicer_for_TBI|Example Project: Coregistration of Structural and Diffusion MRI towards 4D Modeling of TBI]]]]
| style="width:90%" |
=== [[AHM_2013|2013 January: Project Event 16]] ===
The '''16th Project Event''' was held on January 7-11 in Salt Lake City, UT, in conjunction with the [[AHM_2013|2013 NA-MIC AHM]]. It recorded 80 registered attendees, who worked on 54 projects. These attendees represented 17 academic sites and 4 companies. [[AHM_2013|More...]]
|-
|| [[Image:Tracts_colored_by_distance_to_arcuate.png|thumb|left|200px|[[2012_Summer_Project_Week:Intraoperative_Tract_Detection|Example Project: Intraoperative Tract Detection]]]]
| style="width:90%" |

=== [[2012_Summer_Project_Week|2012 June: Project Event 15]] ===
The '''15th Project Event''' was held on June 18-22 in Cambridge, MA. It recorded 88 registered attendees, who worked on 62 projects. These attendees represented 20 academic sites and 8 companies. [[2012_Summer_Project_Week|More...]]
|-
|| [[Image:AFibLongitudinalRegistration-PreOP-text.png|thumb|left|200px|[[2012_Winter_Project_Week:LAWallRegistration|Example Project: Longitudinal Alignment and Visualization of Left-Atrial Wall from DEMRI and MRA]]]]
| style="width:90%" |

=== [[2012_Winter_Project_Week|2012 January: Project Event 14]] ===
The '''14th Project Event''' was held on January 9-13 in Salt Lake City, UT, in conjunction with the [[AHM_2012|2012 NA-MIC AHM]]. It recorded 104 registered attendees, who worked on 57 projects. These attendees represented 19 academic sites and 6 companies. [[2012_Winter_Project_Week|More...]]
|-
|| [[Image:PW-Boston-2011-group-photo-IMG_0144.JPG|thumb|left|200px]]
| style="width:90%" |

=== [[2011_Summer_Project_Week|2011 June: Project Event 13]] ===
The '''13th Project Event''' was held on June 20-24 in Cambridge, MA. It recorded 104 registered attendees, who worked on 61 projects. These attendees represented 17 academic sites and 8 companies. [[2011_Summer_Project_Week|More...]]
|-
|| [[Image:KSlice1.png|thumb|left|200px|[[2011_Winter_Project_Week:MeshCurvolver|Example Projects: Surface Region Segmentation for Surgical Planning and Mapping]]]]
| style="width:90%" |

=== [[2011_Winter_Project_Week|2011 January: Project Event 12]] ===
The '''12th Project Event''' was held on January 10-14 in Salt Lake City, UT, in conjunction with the [[AHM_2011|2011 NA-MIC AHM]]. It recorded 106 registered attendees, who worked on 59 projects. These attendees represented 20 academic sites and 9 companies. [[2011_Winter_Project_Week|More...]]
|-
|| [[Image:2010_Summer_Project_Week_Group.JPG|thumb|left|200px|]]
| style="width:90%" |

=== [[2010_Summer_Project_Week|2010 June: Project Event 11]] ===
The '''11th Project Event''' was held on June 21-25 in Cambridge, MA. It recorded 126 registered attendees, who worked on 71 projects. These attendees represented 30 academic sites and 15 companies. [[2010_Summer_Project_Week|More...]]
|-
|| [[Image:Dicom-rt-import.png|thumb|left|200px|[[2010_Winter_Project_Week_DicomRT_Plugin|Example Project: DicomRT Plugin for Slicer]]]]
| style="width:90%" |

=== [[2010_Winter_Project_Week|2010 January: Project Event 10]] ===
The '''SECOND JOINT Project Event''' (and the tenth PROJECT EVENT) was held on January 4-8 in Salt Lake City, UT, in conjunction with the [[AHM_2010|2010 NA-MIC AHM]]. It recorded 107 registered attendees, who worked on 49 projects. These attendees represented 22 academic sites and 6 companies. [[2010_Winter_Project_Week|More...]]
|-
|| [[Image:2009_Project_Week_Group_Picture.jpg|thumb|left|200px|]]
| style="width:90%" |

=== [[2009_Summer_Project_Week|2009 June: Project Event 9]] ===
The '''FIRST JOINT Project Event''' (and the ninth PROJECT EVENT) was held on June 22-26 in Cambridge, MA. It recorded 134 registered attendees, who worked on 62 projects. These attendees represented 31 academic sites and 9 companies. [[2009_Summer_Project_Week|More...]]
|-
|| [[Image:Arctic_Logo.png| thumb|left|200px|[[UNC_ARCTIC_Tutorial|ARCTIC Tutorial: Winner of the First Tutorial Contest!]]]]
| style="width:90%" |

=== [[2009_Winter_Project_Week|2009 January: Project Event 8]] ===
The eighth NA-MIC Project event was held on January 5-9 in Salt Lake City, UT, in conjunction with the [[AHM_2009|2009 NA-MIC AHM]]. The AHM recorded 92 total attendees. During the project event, 52 projects were actively pursued by the participants. [[2009_Winter_Project_Week|More...]]
|-
|| [[Image:2008MITDay4-016.jpg|thumb|left|200px|]]
| style="width:90%" |

=== [[2008_Summer_Project_Week|2008 June: Project Event 7]]===
The seventh NA-MIC Project event was held on June 23-27 in Cambridge, MA. There were 114 registered participants for this meeting who worked on 58 projects. 14 of these projects were directly related to the NA-MIC DBPs, 19 to External Collaborations, and 15 to NA-MIC Infrastructure. [[2008_Summer_Project_Week| More...]]
|-
|| [[Image:VolumeRenderScene.png|thumb|left|200px|[[2008_Winter_Project_Week:OutOfCoreMRML| Example Project: MRML Support for Out of Core processing]]]]
| style="width:90%" |
=== [[2008_Winter_Project_Week|2008 January: Project Event 6]] ===
The sixth NA-MIC Project event was held on January 7-11 in Salt Lake City, UT, in conjunction with the [[AHM_2008| 2008 NA-MIC AHM]]. The AHM recorded 104 total attendees. During the project event, 38 projects were actively pursued by the participants. [[2008_Winter_Project_Week|More...]]
|-
||[[Image:Mit.jpg|thumb|200px|left|Picture of the event taken by Jeffrey Hawley]]
| style="width:90%" |

=== [[2007_Programming/Project_Week_MIT|2007 June: Project Event 5]] ===
The fifth NA-MIC Project event was concluded on June 29 in Cambridge, MA. This was the largest hands-on project event in the three year history of NA-MIC with 41 active projects and peak attendance of 90. Of the 85 registered attendees, 35 were NA-MIC participants, 48 external collaborators, and 2 representatives from the External Advisory Board and the NIH. The external collaborators were from 13 Institutions. [[2007_Programming/Project_Week_MIT|More...]]
|-
||[[Image:Stochastic_Tractography.jpg|thumb|200px|left|[[Projects:DTIStochasticTractography|Example Project: Stochastic Tractography]]]]
| style="width:90%" |
=== [[2007_Project_Half_Week|2007 January: Project Event 4]] ===
This fourth NA-MIC project event was successfully concluded on January 12 in Salt Lake City, UT, in conjunction with the [[AHM_2007|2007 NA-MIC AHM]]. The AHM recorded 96 total attendees, 56 of whom were NA-MIC participants, 32 were collaborators, and 8 represented the EAB and the NIH. During the project event, 38 projects were actively pursued by the participants. [[2007_Project_Half_Week|More...]]
|-
||[[Image:False_Discovery_Rate_for_Shape_Analysis.jpg|thumb|200px|left|[[Projects:LocalStatisticalAnalysisViaPermutationTests|Example Project: False Discovery Rate for Shape Analysis]]]]
| style="width:90%" |

=== [[2006_Programming/Project_Week_MIT|2006 June: Project Event 3]] ===
The third NA-MIC Project event was successfully concluded on June 30 in Cambridge, MA. It recorded 56 attendees, 38 of whom were NA-MIC participants and 18 were collaborators. During the project event, 22 projects were actively pursued by the participants. [[Engineering:2006_Project_Week_Results|More...]]
|-
||[[Image:DLPFC_Segmentation.jpg|thumb|200px|left|[[Projects:RuleBasedSegmentation|Example Project: Rule Based DLPFC Segmentation]]]]
| style="width:90%" |

=== [[Engineering:Programmers_Half_Week_Jan_2006|2006 January: Project Event 2]] ===
The second NA-MIC project event was successfully concluded on January 13 in Salt Lake City, UT, in conjunction with the [[AHM_2006:AHM_2006|2006 NA-MIC AHM]]. The AHM recorded 85 total attendees, 52 of whom attended this event. During the project event, 24 projects were actively pursued by the participants. [[Engineering:Programmers_Half_Week_Jan_2006|More...]]
|-
||[[Image:Slicer_Architecture_Discussion_Group.jpg|thumb|200px|left|Slicer Re-architecture Discussion Group]]
| style="width:90%" |

=== [[Engineering:Programmers_Week_Summer_2005|2005 June: Project Event 1]] ===
The first NA-MIC Programming Week was successfully concluded on July 1 in Cambridge, MA. It recorded 44 attendees who worked actively on 15 projects. [[Engineering:2005_Programming_Week_Results|More...]]
|}

Dakar 2018

2018-12-12T02:22:46Z

Pieper: Add Pieper slides draft

The Dakar seminar is part of the 2nd [https://mt4sd.ulpgc.es/en/macbioidi-project/ MACbioIDi project] meeting led by Prof. Juan Ruiz Alzola.

*'''Location''': Dakar, Senegal
*'''Date:''' Thursday, December 13, 2018, 5-7 pm GMT

*'''Agenda'''
**5:00-5:05 pm Short session Introduction (Juan Ruiz Alzola)
**5:05-5:20 pm The 3D Slicer Ecosystem (Ron Kikinis)
**5:20-5:35 pm Amigo (Tina Kapur)
**5:35-5:50 pm IGT with Slicer (Gabor Fichtinger/Andras Lasso/Tamas Ungi) US IGT and in training
**5:50-6:05 pm Open Anatomy Browser (Mike Halle)
**6:05-6:20 pm Slicer engineering (Steve Pieper) ([https://docs.google.com/presentation/d/1BbS8htItEQ_XWEOOwWOwOorwdoKsaZPHjoYF_Bluaq0/edit?usp=sharing slides])
**6:20-6:35 pm Chest Imaging Platform (Raul San Jose Estepar)
**6:35-7:00 pm Wrap-up and Q&A (Sonia Pujol)

PW27 Hangouts Notes

2017-12-05T16:37:38Z

Pieper: /* Hangout #4: Nov 28 */

Back to [[Project_Week_27]]

These are the notes from PW#27 Preparation Hangouts

==Hangout #5: Dec 5 ==

* Discussion and work session on github for project week organization
** General goal is to replace the wiki with something more "standard"
** Published site: https://na-mic.github.io/ProjectWeek/
** Repository: https://github.com/NA-MIC/ProjectWeek
** Overall github is not really easier than mediawiki but generally it's agreed that git has become an essential tool that all Project Week attendees will benefit from learning.
* Usage
** Everyone needs to create a github account
** First edit should be done by forking the ProjectWeek repository and creating a pull request
** Several people (Andras, Steve, Jc, Tina...) are administrators who will
*** Merge the pull request
*** Add the attendee to the collaborator list for the Project Week project so that future edits can be done directly without using pull rqeusts
** Discussions about project week should happen on discourse.slicer.org, not on github

==Hangout #4: Nov 28 ==

* Discussion "Slicer solutions"
** Nice because it supports different dissemination mechanism. See [https://discourse.slicer.org/t/its-all-about-transitions-lets-talk-about-slicers-landing-page/113/35?u=jcfr discourse discussion]
** Need to have a community, a gate keeper
** Criteria (copied from discourse):
*** Provides service to an specific community (clinical/methodological)
*** Provides a processing pipeline from beginning to end
*** Has a support system: a dedicated PI/coordinator, a website, documentation/tutorials etc
** Topic to discuss at project week:
*** Where to advertise "commercial" solutions ? It should be clear that is closed source
*** When/how to update list of solutions ?
*** Share story about building FDA approved app based on Slicer
*** Services to support Slicer custom
*** Streamline continuous integration
*** Improve landing page

==Hangout #3: Nov 21 ==
*Main topic: Gran Canaria Team projects
* Administrivia: should we use this to help people copy the template page to make their own project page? https://www.mediawiki.org/wiki/Extension:Duplicator
*Discourse sub community?
**Subscribe, see the welcome page below. google, github, Facebook are all supported authentication options so people can one-click use their existing accounts if they want:
**https://discourse.slicer.org/t/welcome-to-the-3d-slicer-forum/8
**After logging in, visit: https://discourse.slicer.org/c/community/project-week, and click the “Watching” button to enable notifications:
*Administrivia -- assign topics for remainder of the calls
**Nov 28 — SlicerSolutions (owners of 6 solutions are Bea, Andras, Steve, Lauren, Raul, Tamas)
**Dec 5
**Dec 12
**Dec 19
**Jan 2 -- do we need one

=Hangout #2: November 14th, 2017=

*10.00 AM Boston time
* Topics:
** New topics to be added to the project list
** Analytics of traffic in Slicer.org and Discourse
** Registration page to be done
** Andras agreed to provide segmentation help
*** Tina wants to organize it
*** Participants will be asked to provide sharable test data and to post results / tutorial on discourse site

=Hangout #1: November 7th, 2017=

*10.00 AM Boston time
* discussed overall theme of Project Week. After reviewing options VR/AR emerged as a common interest
** recent experimental SlicerOpenVR could be demoed
** other devices could be set up for experimentation
* Discussed opportunity for people to bring their own data to get suggestions for segmentations

RSNA 2017

2017-11-25T16:18:48Z

Pieper: /* 3D Printing Hands-on with Open Source Software: Introduction (Hands-on) */

__NOTOC__
{| class="wikitable" style="background: white;
|colspan="3" |[[image:Rsna2017.png|center]]
|-style="text-align: center;"
|style="width:33%" |[[Image:NAMIC.jpg|50px‎]]
|style="width:33%" |[[Image:NCIGTlogo.gif|120px]]
|style="width:33%" |[[Image:Logo_nac.gif|50px‎]]
|}

[http://www.rsna.org/Annual_Meeting.aspx RSNA Annual Meeting official web site]

'''The events attended by SPL/NA-MIC representatives are listed in the calendar below.'''

{{#widget:Google Calendar
|id=og13rkhv7n81jlljn44c5j9dn8@group.calendar.google.com
|title=RSNA2017
|view=AGENDA
|dates=20171126/20171201
}}

Public Google calendar link: https://calendar.google.com/calendar/embed?src=og13rkhv7n81jlljn44c5j9dn8%40group.calendar.google.com&ctz=America/New_York%22

=Program events=
The following events will be presented at the [http://www.rsna.org/Annual_Meeting.aspx 103rd Annual Meeting of the Radiological Society of North America (RSNA 2017)]
==3D Slicer: an open-source software platform for segmentation, registration, quantitative imaging and 3D visualization of multi-modal imaging data==
3D Slicer is an open-source software platform for medical image analysis and 3D visualization used in clinical research worldwide. The application provides clinical researchers easy access to over 350 modules and extensions that can be run on their Windows, Mac or Linux laptop computer with their own data. 3D slicer provides functionalities for segmentation, registration, automated measurements, quantitative imaging, DICOM interoperability and structured reporting as well as other utilities such as tool tracking and real-time data fusion for image-guided therapy. The platform integrates quantitative image analysis in the imaging workflow and facilitates the translation of innovative algorithms into clinical research tools. 3D Slicer is supported by a multi-institution effort of several NIH-funded consortia, which include the Neuroimage Analysis Center (NAC), the National Center for Image Guided Therapy (NCIGT), and the Quantitative Image Informatics for Cancer Research (QIICR). Funding from several other countries contributes to some aspects of the platform. Over the past 13 years, more than 3,600 clinicians and scientists have attended 3D Slicer training workshops worldwide. Since its release at RSNA 2011, the latest version of the software 3D Slicer version 4 has been downloaded over a quarter million times.

=== Teaching Faculty ===
* Sonia Pujol, PhD, Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women’s Hospital, Boston MA.
* Steve Pieper, PhD, Isomics Inc.
* Andrey Fedorov, PhD, Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women’s Hospital, Boston MA.
* Ron Kikinis, MD, Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women’s Hospital, Boston MA.

===Logistics ===
*Date: Sunday November 26 -Friday December 1, 8:00am-5:00pm
*Meet-the-expert session: Sunday November 26, 12:30pm-1:30pm; Monday, November 27 to Thursday, November 30, 12:15-1:15pm
*Location: Lakeside Learning Center, McCormick Conference Center, Chicago, IL

==[https://qiicr.gitbooks.io/dicom4qi DICOM4QI] demonstration and connectathon: Structured communication of quantitative image analysis results using the DICOM standard==
Accurate and unambiguous communication of derived image-related information is critical for the emerging applications of quantitative imaging (QI), such as disease burden assessment, evaluation of treatment response and image-guided therapy. Digital Imaging and Communications in Medicine (DICOM) is the standard supported ubiquitously by commercial imaging devices. DICOM defines both communication interfaces and data formats for images and image-related information (including measurements, regions of interest (ROIs) and segmentations).

While a variety of DICOM object classes exist for describing derived image-related information, thus far they have found very limited acceptance both in the academic community and among the manufacturers of radiology workstations implementing QI analysis methods. As a result, longitudinal tracking, comparison of methods, and secondary analyses are challenging, while applying QI for analyzing patient image data is difficult or impossible to perform across different platforms.

[https://qiicr.gitbooks.io/dicom4qi DICOM4QI] is a collaborative demonstration and connectathon with the goal of increasing adoption of DICOM in communicating QI analysis results in a structured and interoperable manner.

See details on the DICOM4QI web site: https://qiicr.gitbooks.io/dicom4qi

===Logistics ===
*Date: Sunday November 26 -Friday December 1, 8:00am-5:00pm
*Meet-the-expert session: Monday November 27 to Wednesday November 29, 12:15pm-1:15pm
*Location: Lakeside Learning Center, McCormick Conference Center, Chicago, IL

===Participants/Organizers===
Andrey Fedorov, Lauren J. O’Donnell, Daniel Rubin, David Clunie, David Flade, Marco Nolden, Chris Hafey, Erik Ziegler, Paul Wighton, Dirk Smeets, James Reuss, Jayashree Kalpathy-Cramer, Justin Kirby, Christian Herz, Isaiah Norton, Michael Onken, Jörg Riesmeier, Gordon Harris, Steve Pieper, Ron Kikinis

==3D Printing Hands-on with Open Source Software: Introduction (Hands-on)==
“3D printing” refers to fabrication of a physical object from a digital file with layer-by-layer deposition instead of conventional machining, and allows for creation of complex geometries, including anatomical objects derived from medical scans. 3D printing is increasingly used in medicine for surgical planning, education, and device testing. The purpose of this hands-on course is to teach the learner to convert a standard Digital Imaging and Communications in Medicine (DICOM) data set from a medical scan into a physical 3D printed model through a series of simple steps using free and open-source software. Basic methods of 3D printing will be reviewed. Initial steps include viewing and segmenting the imaging scan with 3D Slicer, an open-source software package. The anatomy will then be exported into stereolithography (STL) file format, the standard engineering format that 3D printers use. Then, further editing and manipulation such as smoothing, cutting, and applying text will be demonstrated using MeshMixer and Blender, both free software programs. Methods described will work with Windows, Macintosh, and Linux computers. The learner will be given access to comprehensive resources for self-study before and after the meeting, including an extensive training manual and online video tutorials.

=== Teaching Faculty ===
*Michael W. Itagaki, MD, MBA Seattle, WA
*Beth A. Ripley, MD, PhD Seattle, WA
*Tatiana Kelil, MD, San Francisco, CA
*Carissa White, MD, Los Angeles, CA
*Anish Ghodadra, MD, Pittsburgh, PA
*Dmitry Levin, Seattle, WA
*Steve D. Pieper, PhD, Cambridge, MA

===Logistics ===
*Dates
** Sunday November 26, 8:30am-10:00am, RCA21
** Monday November 27, 8:30am-10:00am, RCA21
** Wednesday November 29, 8:30am-10:00am, RCA41 (Advanced topics)
*Location: All sessions in S401AB

==Radiomics Mini-Course: Informatics Tools and Databases==
Quantitative imaging holds tremendous but largely unrealized potential for objective characterization of disease and response to therapy. Quantitative imaging and analysis methods are actively researched by the community. Certain quantitation techniques are gradually becoming available both in the commercial products and clinical research platforms. As new quantitation tools are being introduced, tasks such as their integration into the clinical or research enterprise environment, comparison with similar existing tools and reproducible validation are becoming of critical importance. Such tasks require that the analysis tools provide the capability to communicate the analysis results using open and interoperable mechanisms. The use of open standards is also of utmost importance for building aggregate community repositories and data mining of the analysis results. The goal of this talk is to improve the understanding of the interoperability, as applied to quantitative image analysis, with the focus on clinical research applications.

=== Teaching Faculty===
*Jayashree Kalpathy-Cramer, MS, PhD
*Justin Kirby, PhD
*Andriy Fedorov, PhD, Surgical Planning Laboratory, Harvard Medical School, Department of Radiology, Brigham and Women’s Hospital, Boston MA.

=== Logistics ===
*Date: Tuesday November 28, 4:30pm-6:00pm | RC425
*Location: S103CD

PW27 Hangouts Notes

2017-11-14T15:43:05Z

Pieper: /* Hangout #2: November 14th, 2017 */

Back to [[Project_Week_27]]

These are the notes from PW#27 Preparation Hangouts

=Hangout #1: November 7th, 2017=

*10.00 AM Boston time
* discussed overall theme of Project Week. After reviewing options VR/AR emerged as a common interest
** recent experimental SlicerOpenVR could be demoed
** other devices could be set up for experimentation
* Discussed opportunity for people to bring their own data to get suggestions for segmentations

=Hangout #2: November 14th, 2017=

*10.00 AM Boston time
* Topics:
** New topics to be added to the project list
** Analytics of traffic in Slicer.org and Discourse
** Registration page to be done
** Adras agreed to provide segmentation help
*** Tina wants to organize it
*** Participants will be asked to provide sharable test data and to post results / tutorial on discourse site

PW27 Hangouts Notes

2017-11-14T15:41:35Z

Pieper: /* Hangout #1: November 7th, 2017 */

Project Week 27

2017-11-14T15:38:58Z

Pieper: /* Deep Learning and GPUs */

{{Clear|right}}{{TOC right}}
Back to [[Events]]

A summary of all past [[Project_Events#Past_Project_Weeks|Project Events]].

[[image:PW27.png|300px]]
 

=Welcome to the web page for the 27th Project Week!=
The 27th NA-MIC Project Week will be held during the week of January 8-12, 2018 at MIT.

This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.

Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list].

==Logistics==

*'''Dates:''' January 9-13, 2017.
*'''Location:''' [https://www.google.com/maps/place/MIT:+Computer+Science+and+Artificial+Intelligence+Laboratory/@42.361864,-71.090563,16z/data=!4m2!3m1!1s0x0:0x303ada1e9664dfed?hl=en MIT CSAIL], Cambridge, MA. (Rooms: R&D)
*'''Transportation:''' Public transportation is highly encouraged, as no parking permits will be issued by MIT. For a list of local garages, please see [http://web.mit.edu/facilities/transportation/parking/visitors/public_parking.html here]
*'''REGISTRATION:''' Register [https://www.regonline.com/2017projectweek here]. Registration Fee: $330.
*'''Hotel:''' Similar to previous years, no rooms have been blocked in a particular hotel.

== Introduction ==
The National Alliance for Medical Image Computing (NAMIC), was founded in 2005 and chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], enhancements to the underlying building blocks [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an open source hackathon event called Project Week.

[[Engineering:Programming_Events|Project Week]] is a semi-annual open source hackathon which draws 60-120 researchers. As of August 2014, it is a [http://www.miccai.org/organization MICCAI] endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO].

Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list]

==Conference Calls for Preparation==

=== Notes ===

Conference call notes are available [[PW27_Hangouts_Notes|here]].

=== Planning Call Calendar ===

{{#widget:Google Calendar
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com
|timezone=America/New_York&dates=20170108%2F20170114
|title=Conference Calls for Preparation
|view=WEEK
}}

=== Project Week Joining Info ===
To join the preparation hangout, click on the event above, then "more details" and finally click on the video link under "Joining Info".

[[File:2018-winter-projectweek-calendar-joining.png]]

==Calendar==



{{#widget:Google Calendar
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com
|timezone=America/New_York&dates=20170108%2F20170114
|title=NAMIC Winter Project Week
|view=WEEK
|dates=20180108/20180112
}}

iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

='''Projects'''=

== How to add a new project ? ==

# Join the weekly [[#Conference_Calls_for_Preparation|preparation call]] to discuss your idea
# Add a new entry in the category below copying the [[2018_Project_Week_Template | Project Template]]

== Visualization and Interaction ==

== Deep Learning. Radiomics and GPUs ==

== Web Technologies ==

== IGT: Navigation, Robotics, Surgical Planning ==

==dMRI==

==Quantitative Imaging Informatics==

== Shape Analysis, Segmentation ==
#[[Project_Week_27/SlicerSALT | SlicerSALT Shape Analysis Toolbox Updates]] (Laura Pascal, JC Fillon-Robin, Beatriz Paniagua)
#Segmentation Inverse Challenge Playoff (Tina Kapur, Csaba Pinter, Steve Pieper, Andras Lasso)

== Infrastructure ==
#[[Project_Week_27/Slicer Custom Application | Slicer Custom Application]] (Jc Fillon-Robin, Andras Lasso)
#[[Project_Week_27/Slicer Documentation | Slicer Documentation @ ReadTheDocs]] (Jc Fillon-Robin, Andras Lasso)

==Training and Dissemination==

= '''Registrants''' =

Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this [https://www.regonline.com/2018projectweek registration site].

PW27 Hangouts Notes

2017-11-14T14:46:11Z

Pieper: /* Hangout #1: November 7th, 2017 */

Back to [[Project_Week_27#Notes]]

These are the notes from PW#27 Preparation Hangouts

=Hangout #1: November 7th, 2017=

*10.00 AM Boston time
* discussed overall theme of Project Week. After reviewing options VR/AR emerged as a common interest
** recent experimental SlicerOpenVR could be demoed
** other devices could be set up for experimentation

=Hangout #2: November 14th, 2017=

*10.00 AM Boston time
* [Add topics here]

Project Events

2017-07-11T18:50:37Z

Pieper: /* Upcoming Project Weeks */

__NOTOC__
= Introduction =

{| style="width:800px"
| [[Image:2016 Winter Project Week Final Day.JPG|left|800px|Participants in the 2015 winter Project Week.]]
|-
| style="text-align: center; color: #3366ff;"|'''[[2016_Winter_Project_Week|Participants at the 2016 Winter Event]]'''
|-
|
|-
|
|-
|'''What?''' The Project Week is a week-long hands on activity in which medical image computing researchers create solutions using the open source image computing platform, [http://www.slicer.org 3D Slicer], and [http://www.vtk.org VTK], [http://www.itk.org ITK], and [http://www.cmake.org CMake] libraries. Participants work collaboratively on solutions that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conferences and workshops where the primary focus is to report results, the objective of the Project Week is to provide a venue for creators of medical image computing open-source software creators to collaboratively work.

'''When, where, how much?''' Twice a year - June in Europe, and January at MIT. Ad-hoc meetings are added occasionally. The registration fee is approximately 350 (USD or Euro), and is used to cover coffee and food.

'''How does it work?''' Weekly videoconferences for preparation begin 8-12 weeks before an event. Potential participants propose projects during these meetings, and collaboratively create a list of projects that are of mutual interest. The projects include platform work, algorithm development, and biomedical applications. Through the course of the meetings, each participant selects one or more project teams and develops goals for the week. The first day of the Project Week itself begins with a 2-hour in-person introduction to all projects and participants. The rest of the week consists of a mix of working sessions and breakout sessions on special topics, as decided by the participants during the preparatory meetings.

'''Who can attend?''' Project Weeks are open to all and publicly advertised. One-day participation is permitted for first-time attendees, but rest stay for the entire event. Email announcements are sent to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week Project Week mailing list].

'''Who should attend?''' This is harder to determine. Your best bet is to send an email (see below) or attend a preparatory videoconference.

'''What else?''' The Project Week series was founded in 2005, along with the [https://wiki.na-mic.org/ National Alliance for Medical Image Computing (NA-MIC)], which was chartered by the NIH to build a computational infrastructure for biomedical research. Today, Project Week has become one of the major events in the calendars of several NIH-funded Center efforts. Participants in Project Week include [https://projects.iq.harvard.edu/nac NAC], [http://ncigt.org NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process OCAIRO]. As of 2014, Project Week is also a MICCAI endorsed event.

'''Who to contact?''' Project Weeks are led by [http://mailto:tkapur@bwh.harvard.edu Tina Kapur, PhD], who is happy to tell you more about them.
|}

=Upcoming Project Weeks=

{|
|| [[Image:SPWW_Summer2017.png|thumb|left|200px|]]
| style="width:90%" |

=== [http://wiki.imaging.robarts.ca July: Project Event 26]===
The '''26th Project Event''' will be held on July 17-21, 2017, Robarts Research Institute, London, ON, Canada. [http://wiki.imaging.robarts.ca/ More...]
|}
----

=Past Project Weeks=
{|
|-
|[[Image:YeB_atlas_segmentation.jpg|thumb|left|200px|[[Project_Week_25/Surgical_Planning_In_Stereotaxy |Example Project: Surgical Planning In Stereotaxy]]]]
| style="width:90%" |

=== [[2017_Summer_Project_Week|2017 June: Project Event 25]]===
The '''25th Project Event''' was held on June 26-30, 2017, Catanzaro Lido, Calabria, Italy. It recorded 51 registered attendees, who worked on 29 projects. [[2017_Summer_Project_Week|More...]]
|}

{|
|-
|| [[Image:Needles_winter_project_week_2017.png|thumb|left|200px|[[2017_Winter_Project_Week/Needle_Segmentation_from_MRI |Example Project: Needle Segmentation from MRI]]]]
| style="width:90%" |

=== [[2017_Winter_Project_Week|2017 January: Project Event 24]]===
The '''24th Project Event''' was held on January 9-13, 2017, MIT, Cambridge, MA. It recorded 99 registered attendees, who worked on 55 projects. [[2017_Winter_Project_Week| More...]]
|}

{|
|-
|| [[Image:Brainstem contours 3D.png|thumb|left|200px|[[2016_Summer_Project_Week/Brain_atlas_combining_histology_and_MRI|Example Project: Brain atlas combining histology and MRI]]]]
| style="width:90%" |
=== [[2016_Summer_Project_Week|2016 June: Project Event 23]]===
The '''23rd Project Event''' was held on June 20-25, 2016, with one day break on June 21st for IPCAI, Heidelberg, Germany. It recorded 58 registered attendees, who worked on 32 projects. [[2016_Summer_Project_Week|More...]]
|}

{|
|-
|| [[Image:2016_Winter_Project_Week_Final_Day.JPG|thumb|left|200px|]]
| style="width:90%" |
=== [[2016_Winter_Project_Week|2016 January: Project Event 22]]===
The '''22th Project Event''' was held on January 4-8, 2016, MIT, Cambridge, MA. It recorded 77 registered attendees, who worked on 47 projects. These attendees represented 17 academic sites and 8 companies. [[2016_Winter_Project_Week|More...]]
|-
|| [[Image:RegResults.png|thumb|left|200px|[[2015_Refinement_Registration_Module|Example Project: Refinement Registration]]]]
| style="width:90%" |
=== [[2015_Summer_Project_Week|2015 June: Project Event 21]]===
The '''21st Project Event''' was held on June 21-24, in Barcelona, Spain. It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites and 7 companies. [[2015_Summer_Project_Week|More...]]
|-
|| [[Image:VR_RadiologyEnvironment.png|thumb|left|200px|[[VR_Radiology|Example Project: Virtual Reality Devices in Creating Environments for Diagnostic Radiology]]]]
| style="width:90%" |

=== [[2015_Winter_Project_Week|2015 January: Project Event 20]]===
The '''20th Project Event''' was held on January 5-9 in Salt Lake City, UT. t recorded 44 registered attendees, who worked on 42 projects. These attendees represented 11 academic sites and 4 companies. [[2015_Winter_Project_Week|More...]]
|-
|| [[Image:Projectweek-2014-06-23-IMG_0837.JPG|thumb|left|200px|]]
| style="width:90%" |
=== [[2014_Summer_Project_Week|2014 June: Project Event 19]]===
The '''19th Project Event''' was held on June 23-27 in Cambridge, MA. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites and 4 companies. [[2014_Summer_Project_Week|More...]]
|-
|| [[Image:LAsegment_GraphCut.png|thumb|left|200px|[[2014_Project_Week:GraphCutsLASegmentationModule|Example Project: LA Segmentation Module using Multi-column Graph Cuts]]]]
| style="width:90%" |
=== [[2014_Winter_Project_Week|2014 January: Project Event 18]]===
The '''18th Project Event''' was held on January 6-10 in Salt Lake City, UT, in conjunction with the [[AHM_2014|2014 NA-MIC AHM]]. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites and 4 companies. [[2014_Winter_Project_Week|More...]]
|-
|| [[Image:HD01-i.png|thumb|left|200px|[[Linear_Mixed-effects_shape_model_to_explore_Huntington%27s_Disease_Data|Example Project: Linear Mixed-effects Shape Model to Explore Huntington's Disease Data]]]]
| style="width:90%" |

=== [[2013_Summer_Project_Week|2013 June: Project Event 17]]===
The '''17th Project Event''' was held on June 17-21 in Cambridge, MA. It recorded 104 registered attendees, who worked on 75 projects. These attendees represented 22 academic sites and 13 companies. [[2013_Summer_Project_Week|More...]]
|-
|| [[Image:Diff_reg_TBI.png|thumb|left|200px|[[4D_DTI_tractography_in_Slicer_for_TBI|Example Project: Coregistration of Structural and Diffusion MRI towards 4D Modeling of TBI]]]]
| style="width:90%" |
=== [[AHM_2013|2013 January: Project Event 16]] ===
The '''16th Project Event''' was held on January 7-11 in Salt Lake City, UT, in conjunction with the [[AHM_2013|2013 NA-MIC AHM]]. It recorded 80 registered attendees, who worked on 54 projects. These attendees represented 17 academic sites and 4 companies. [[AHM_2013|More...]]
|-
|| [[Image:Tracts_colored_by_distance_to_arcuate.png|thumb|left|200px|[[2012_Summer_Project_Week:Intraoperative_Tract_Detection|Example Project: Intraoperative Tract Detection]]]]
| style="width:90%" |

=== [[2012_Summer_Project_Week|2012 June: Project Event 15]] ===
The '''15th Project Event''' was held on June 18-22 in Cambridge, MA. It recorded 88 registered attendees, who worked on 62 projects. These attendees represented 20 academic sites and 8 companies. [[2012_Summer_Project_Week|More...]]
|-
|| [[Image:AFibLongitudinalRegistration-PreOP-text.png|thumb|left|200px|[[2012_Winter_Project_Week:LAWallRegistration|Example Project: Longitudinal Alignment and Visualization of Left-Atrial Wall from DEMRI and MRA]]]]
| style="width:90%" |

=== [[2012_Winter_Project_Week|2012 January: Project Event 14]] ===
The '''14th Project Event''' was held on January 9-13 in Salt Lake City, UT, in conjunction with the [[AHM_2012|2012 NA-MIC AHM]]. It recorded 104 registered attendees, who worked on 57 projects. These attendees represented 19 academic sites and 6 companies. [[2012_Winter_Project_Week|More...]]
|-
|| [[Image:PW-Boston-2011-group-photo-IMG_0144.JPG|thumb|left|200px]]
| style="width:90%" |

=== [[2011_Summer_Project_Week|2011 June: Project Event 13]] ===
The '''13th Project Event''' was held on June 20-24 in Cambridge, MA. It recorded 104 registered attendees, who worked on 61 projects. These attendees represented 17 academic sites and 8 companies. [[2011_Summer_Project_Week|More...]]
|-
|| [[Image:KSlice1.png|thumb|left|200px|[[2011_Winter_Project_Week:MeshCurvolver|Example Projects: Surface Region Segmentation for Surgical Planning and Mapping]]]]
| style="width:90%" |

=== [[2011_Winter_Project_Week|2011 January: Project Event 12]] ===
The '''12th Project Event''' was held on January 10-14 in Salt Lake City, UT, in conjunction with the [[AHM_2011|2011 NA-MIC AHM]]. It recorded 106 registered attendees, who worked on 59 projects. These attendees represented 20 academic sites and 9 companies. [[2011_Winter_Project_Week|More...]]
|-
|| [[Image:2010_Summer_Project_Week_Group.JPG|thumb|left|200px|]]
| style="width:90%" |

=== [[2010_Summer_Project_Week|2010 June: Project Event 11]] ===
The '''11th Project Event''' was held on June 21-25 in Cambridge, MA. It recorded 126 registered attendees, who worked on 71 projects. These attendees represented 30 academic sites and 15 companies. [[2010_Summer_Project_Week|More...]]
|-
|| [[Image:Dicom-rt-import.png|thumb|left|200px|[[2010_Winter_Project_Week_DicomRT_Plugin|Example Project: DicomRT Plugin for Slicer]]]]
| style="width:90%" |

=== [[2010_Winter_Project_Week|2010 January: Project Event 10]] ===
The '''SECOND JOINT Project Event''' (and the tenth PROJECT EVENT) was held on January 4-8 in Salt Lake City, UT, in conjunction with the [[AHM_2010|2010 NA-MIC AHM]]. It recorded 107 registered attendees, who worked on 49 projects. These attendees represented 22 academic sites and 6 companies. [[2010_Winter_Project_Week|More...]]
|-
|| [[Image:2009_Project_Week_Group_Picture.jpg|thumb|left|200px|]]
| style="width:90%" |

=== [[2009_Summer_Project_Week|2009 June: Project Event 9]] ===
The '''FIRST JOINT Project Event''' (and the ninth PROJECT EVENT) was held on June 22-26 in Cambridge, MA. It recorded 134 registered attendees, who worked on 62 projects. These attendees represented 31 academic sites and 9 companies. [[2009_Summer_Project_Week|More...]]
|-
|| [[Image:Arctic_Logo.png| thumb|left|200px|[[UNC_ARCTIC_Tutorial|ARCTIC Tutorial: Winner of the First Tutorial Contest!]]]]
| style="width:90%" |

=== [[2009_Winter_Project_Week|2009 January: Project Event 8]] ===
The eighth NA-MIC Project event was held on January 5-9 in Salt Lake City, UT, in conjunction with the [[AHM_2009|2009 NA-MIC AHM]]. The AHM recorded 92 total attendees. During the project event, 52 projects were actively pursued by the participants. [[2009_Winter_Project_Week|More...]]
|-
|| [[Image:2008MITDay4-016.jpg|thumb|left|200px|]]
| style="width:90%" |

=== [[2008_Summer_Project_Week|2008 June: Project Event 7]]===
The seventh NA-MIC Project event was held on June 23-27 in Cambridge, MA. There were 114 registered participants for this meeting who worked on 58 projects. 14 of these projects were directly related to the NA-MIC DBPs, 19 to External Collaborations, and 15 to NA-MIC Infrastructure. [[2008_Summer_Project_Week| More...]]
|-
|| [[Image:VolumeRenderScene.png|thumb|left|200px|[[2008_Winter_Project_Week:OutOfCoreMRML| Example Project: MRML Support for Out of Core processing]]]]
| style="width:90%" |
=== [[2008_Winter_Project_Week|2008 January: Project Event 6]] ===
The sixth NA-MIC Project event was held on January 7-11 in Salt Lake City, UT, in conjunction with the [[AHM_2008| 2008 NA-MIC AHM]]. The AHM recorded 104 total attendees. During the project event, 38 projects were actively pursued by the participants. [[2008_Winter_Project_Week|More...]]
|-
||[[Image:Mit.jpg|thumb|200px|left|Picture of the event taken by Jeffrey Hawley]]
| style="width:90%" |

=== [[2007_Programming/Project_Week_MIT|2007 June: Project Event 5]] ===
The fifth NA-MIC Project event was concluded on June 29 in Cambridge, MA. This was the largest hands-on project event in the three year history of NA-MIC with 41 active projects and peak attendance of 90. Of the 85 registered attendees, 35 were NA-MIC participants, 48 external collaborators, and 2 representatives from the External Advisory Board and the NIH. The external collaborators were from 13 Institutions. [[2007_Programming/Project_Week_MIT|More...]]
|-
||[[Image:Stochastic_Tractography.jpg|thumb|200px|left|[[Projects:DTIStochasticTractography|Example Project: Stochastic Tractography]]]]
| style="width:90%" |
=== [[2007_Project_Half_Week|2007 January: Project Event 4]] ===
This fourth NA-MIC project event was successfully concluded on January 12 in Salt Lake City, UT, in conjunction with the [[AHM_2007|2007 NA-MIC AHM]]. The AHM recorded 96 total attendees, 56 of whom were NA-MIC participants, 32 were collaborators, and 8 represented the EAB and the NIH. During the project event, 38 projects were actively pursued by the participants. [[2007_Project_Half_Week|More...]]
|-
||[[Image:False_Discovery_Rate_for_Shape_Analysis.jpg|thumb|200px|left|[[Projects:LocalStatisticalAnalysisViaPermutationTests|Example Project: False Discovery Rate for Shape Analysis]]]]
| style="width:90%" |

=== [[2006_Programming/Project_Week_MIT|2006 June: Project Event 3]] ===
The third NA-MIC Project event was successfully concluded on June 30 in Cambridge, MA. It recorded 56 attendees, 38 of whom were NA-MIC participants and 18 were collaborators. During the project event, 22 projects were actively pursued by the participants. [[Engineering:2006_Project_Week_Results|More...]]
|-
||[[Image:DLPFC_Segmentation.jpg|thumb|200px|left|[[Projects:RuleBasedSegmentation|Example Project: Rule Based DLPFC Segmentation]]]]
| style="width:90%" |

=== [[Engineering:Programmers_Half_Week_Jan_2006|2006 January: Project Event 2]] ===
The second NA-MIC project event was successfully concluded on January 13 in Salt Lake City, UT, in conjunction with the [[AHM_2006:AHM_2006|2006 NA-MIC AHM]]. The AHM recorded 85 total attendees, 52 of whom attended this event. During the project event, 24 projects were actively pursued by the participants. [[Engineering:Programmers_Half_Week_Jan_2006|More...]]
|-
||[[Image:Slicer_Architecture_Discussion_Group.jpg|thumb|200px|left|Slicer Re-architecture Discussion Group]]
| style="width:90%" |

=== [[Engineering:Programmers_Week_Summer_2005|2005 June: Project Event 1]] ===
The first NA-MIC Programming Week was successfully concluded on July 1 in Cambridge, MA. It recorded 44 attendees who worked actively on 15 projects. [[Engineering:2005_Programming_Week_Results|More...]]
|}

Project Week 25/DICOM for Quantitative Imaging and Integration with Processing Applications

2017-06-30T09:50:27Z

Pieper: /* Project Description */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [https://www.dkfz.de/en/mic/team/people/Marco_Nolden.html Marco Nolden] (German Cancer Research Center (DKFZ), Germany)
* [https://www.dkfz.de/en/mic/team/people/Jasmin_Metzger.html Jasmin Metzger] (German Cancer Research Center (DKFZ), Germany)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper] (Isomics Inc., USA)
* [https://fedorov.github.io Andrey Fedorov](remote) (Brigham and Women's Hospital, Harvard Medical School, USA)
* [https://www.kitware.com/jean-christophe-fillion-robin/ Jean-Christophe Fillion-Robin] (Kitware, Inc., USA)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|
* Discuss topics related to using the DICOM standard for storing results of quantitative image analysis
** DICOM Structured Reports (SR)
** DICOM Segmentation (SEG) objects
** DICOM Parametric map (PM) objects
** Interoperability (Slicer, MITK, XNAT, Web Viewers)
** Interaction with processing algorithms and pipelines (CLI, Docker)
** Integration with databases (CTK DICOM Database, Elasticsearch, Postgres/XNAT)

|
* Fix packaging issues of dcmqi (see [https://github.com/QIICR/dcmqi/issues/260 dcmqi issue #260])
* Create examples of interoperability with pipelines and databases
* Preparing the satellite event at MICCAI 2017

|

* Many discussions about detailed implementation and use
* Prototyping with cornerstone/slicer/dcmqi/mitk integration
|}

==Illustrations==
<gallery heights=400px mode="packed">
Image:DICOM_QI_Slicer-read-td4.png|Slicer
Image:DICOM_QI_MITK_td4-read-prostate.png|MITK
</gallery>



==Background and References==

* [http://qiicr.org/dicom4miccai/ Tutorial satellite event at MICCAI 2017 DICOM4MICCAI]
* [https://github.com/QIICR/dcmqi dcmqi] - tools to convert image analysis results into DICOM objects
* [http://qiicr.org/dcmqi-guide/tutorials/intro.html dcmqi self-guided video tutorials]
* [https://qiicr.gitbooks.io/dicom4qi DICOM4QI: DICOM for Quantitative Imaging demonstration and connectathon at RSNA]

Project Week 25

2017-06-30T09:44:17Z

Pieper: /* Augmented Reality and Virtual Reality */

__NOTOC__
Back to [[Events]]

A summary of all past [[Project_Events#Past_Project_Weeks|Project Events]].

[[image:PW25.png|300px]] [[image:IEL_logo.png|225px]]
 

=Welcome to the web page for the 25th Project Week!=
It is a pleasure to announce that the 25th Project week will be held in [https://goo.gl/maps/b9CpkFxNyWN2 Catanzaro Lido] (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with [http://www.imagenglab.com ImagEngLab]. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!

This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.

Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list].

===Local Organizing Committee===
*[http://www.imagenglab.com/newsite/mf_spadea/ Maria Francesca Spadea, PhD]
*[http://www.imagenglab.com/newsite/paolo_zaffino/ Paolo Zaffino, PhD].

==Logistics==
*'''Dates:''' June 26-30, 2017. Details in the calendar below.
*'''Location:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. [mailto:prenotazioni@hotelperladelporto.it Booking]. Subject line: "Slicer Summer Project Week 2017". Special rates: Single room, full bed, 79 € per night (1 person)/ Single room, queen bed 89 € per night (1 person)/ Double room, queen bed 99 € per night (2 people)/Triple room, 110 € (3 people)
*'''Registration:''' To register please visit this [http://www.imagenglab.com/newsite/project-week page]
*'''Registration Fee:''' 320€ and it includes lunches, coffee breaks and airport connections
*'''Hotel:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. The closest airport is [http://www.lameziaairport.it/english/ Lamezia Terme Airport (IATA: SUF)].
*'''Transportation from Airport to Hotel:''' Your registration fee includes ground transportation [https://www.google.com/maps/dir/Lamezia+Terme+International+Airport,+Via+Aeroporto,+88046+Lamezia+Terme+CZ,+Italy/BEST+WESTERN+PLUS+Hotel+Perla+Del+Porto,+Via+Martiri+di+Cefalonia,+64,+88100+Catanzaro,+Italy/@38.868758,16.1564814,10z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x133fe15a3cbed47f:0x544ab120c3de78a6!2m2!1d16.2434017!2d38.9065845!1m5!1m1!1s0x134003d668252a13:0x2989caf676f45a72!2m2!1d16.6312407!2d38.827712!3e0 to/from the hotel and airport]. Please fill out this [https://goo.gl/forms/7vmhxZSHy8Z1A62z2 form] to request transportation
*'''Local points of interest (pubs, restaurants, bar):''' [https://www.google.com/maps/d/viewer?mid=1FU63ik9Do3zzP6K2kvLVTtM2at8&ll=38.86221979925013%2C16.44292274999998&z=12 map] (constantly updated)

==Calendar==
{{#widget:Google Calendar
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com
|timezone=America/New_York&dates=20170108%2F20170114
|title=NA-MIC Project Week (Timezone is Italy / GMT+02.)
|view=WEEK
|dates=20170626/20170701
}}

iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

==Breakout Sessions==
*[[Project_Week_25/Neuro-navigation_breakout_session|Neuro-navigation Breakout Session]]
*[[Project_Week_25/Segment_editor_breakout_session|Segment Editor Breakout Session]]

=Projects=

<big>Please duplicate [https://na-mic.org/wiki/Project_Week_Template this template] to create a page for your project. </big>

Please put a brief preliminary title for your project here with some names in parenthesis for potential team members
==Deep Learning Applications==
#[[Project_Week_25/NeedleSegmentation |CNN for Needle Segmentation from MRI Images]]
#[[Project_Week_25/CNN_for_multi-plane_prostate_segmentation | CNN for Multi-plane Prostate Segmentation]]
#[[Project_Week_25/CNN for PseudoCT Generation from T1T2 MR|CNN for PseudoCT Generation from T1/T2 MRI]]
#[[Project_Week_25/Breast Cancer Analysis in DCE-MRI | Breast Cancer Segmentation in DCE-MRI via Deep Learning Approaches]]

==Augmented Reality and Virtual Reality==
#[[Project_Week_25/Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification | Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification]]
# [[Project_Week_25/Next_Generation_GPU_Volume_Rendering | Next Generation of Volume Rendering in VTK ]]
#[[Project_Week_25/Intra-operative deformable_registration_based_on_dense_point_cloud_reconstruction |Intra-operative Deformable Registration Based on Dense Point Cloud Reconstruction for Augmented Reality in Laproscopic Surgery]]


==Navigating Ultrasound==
# [[Project_Week_25/Tracked-Ultrasound-Standardization-IV | Tracked Ultrasound Standardization IV: Controlling US Acquisition]]
#[[Project_Week_25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation |Segmentation for Improving Image Registration of Preoperative MRI with Intraoperative Ultrasound Images for Neuro-navigation]]
==DICOM==
#[[Project_Week_25/DICOM_for_Quantitative_Imaging_and_Integration_with_Processing_Applications|DICOM for Quantitative Imaging and Integration with Processing Applications]]
#[[Project_Week_25/Conversion of DICOM Single Frame MR to Enhanced Multiframe | Conversion of DICOM Single Frame MR to Enhanced Multiframe]]
#[[Project_Week_25/DICOM Segmentation Support for Cornerstone and OHIF Viewer | DICOM Segmentation Support for Cornerstone/ OHIF Viewer]]

==Chest Image Processing==
#[[Project_Week_25/SlicerCIP_Bronchiectasis | SlicerCIP: Tool for Quantitative Analysis of Bronchiectasis]]
#[[Project_Week_25/SlicerCIP_ReportsTool | SlicerCIP: Tool for Creation of Reports for Quantitive Analysis]]
==Platform==
#[[Project_Week_25/Interactive_Manipulation_of_Plots_and_Graphs | Interactive Manipulation of Plots and Graphs]]
#[[Project_Week_25/Internationalizing Slicer Modules|Internationalizing Slicer Modules]]
#[[Project_Week_25/Interfacing Slicer to Mobile Phone-controlled Sensors|Interfacing Slicer to Mobile Phone-controlled Sensors]]
#[[Project_Week_25/Slicer and 3D Printing|Slicer and 3D Printing]]
#[[Project_Week_25/Multimodal: | Multimodal, Multiresolution, Multivolume Data]]
#[[Project_Week_25/Human-Computer_Interaction_under_sterile_conditions |Human-Computer Interaction under Sterile Conditions]]

==Applications Smorgasbord==
#[[Project_Week_25/Steerable Catheters Path Planner Extension for Brain Surgery Applications | Steerable Catheters Path Planner Extension for Brain Surgery Applications]]
#[[Project_Week_25/Slice-to-Volume Registration to Support MRI guided Interventions | Slice-to-Volume Registration to Support MRI Guided Interventions ]]
#[[Project_Week_25/Surgical_Planning_In_Stereotaxy | Surgical Planning In Stereotaxy ]]
#[[Project_Week_25/SALT_Spatiotemporal_Modeling: | Slicer SALT Validation: Spatiotemporal Modeling of Subcortical Structures ]]
#[[Project_Week_25/Wrist_Kinematics: | Kinematic Analysis of the Wrist from Dynamic MRI]]
#[[Project_Week_25/EBP | External Beam Planning]]

=Registrants=

Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this [http://www.imagenglab.com/newsite/project-week/ registration site].

# Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA
# Pieper, Steve :: Isomics, Inc., USA
# Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA
# Spadea, Maria Francesca :: Magna Graecia University, Italy
# Zaffino, Paolo :: Magna Graecia University, Italy
# Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy
# Pileggi, Giampaolo :: Magna Graecia University, Italy/German Cancer Research Center (DKFZ), Germany
# Rackerseder, Julia :: Technical University of Munich, Germany
# Pinter, Csaba :: Queen's University, Canada
# Kraß, Scheherazade :: University of Bremen, Germany
# Gerig, Guido :: NYU Tandon School of Engineering, USA
# Punzo, Davide :: Kapteyn Astronomical Institute, University of Groningen, The Netherlands
# Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada
# Lasso, Andras :: School of Computing, Queen's University, Canada
# Favaro, Alberto :: Politecnico di Milano, Italy
# Leger, Etienne :: Concordia University, Canada
# Ziegler, Erik :: Ziegler Consult SAS
# Onken, Michael :: Open Connections GmbH, Germany
# Pinzi, Marlene :: Imperial College, UK
# Nitsch, Jennifer :: University of Bremen, Germany
# Moccia, Sara :: Politecnico di Milano, Italy
# Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany
# Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany
# Hansen, Christian :: University of Magdeburg, Germany
# Vegard Solberg, Ole :: Norway
# Heinrich, Florian :: University of Magdeburg, Germany
# Mewes, André :: University of Magdeburg, Germany
# Hatscher, Benjamin :: University of Magdeburg, Germany
# Hettig, Julian :: University of Magdeburg, Germany
# Meyer, Anneke :: University of Magdeburg, Germany
# Gulamhussene, Gino :: University of Magdeburg, Germany
# Cassetta, Roberto :: Polytechnic University of Milan, Italy
# Fillion-Robin, Jean-Christophe :: Kitware, Inc., USA
# Metzger, Jasmin :: German Cancer Research Center (DKFZ), Germany
# Fishbaugh, James :: NYU Tandon School of Engineering, USA
# Nolden, Marco :: German Cancer Research Center (DKFZ), Germany
# Nehrkorn, Jorge Quintero :: Canary Islands, Spain
# Perez Garcia, Fernando :: ICM Brain & Spine Institute, Paris, France
# De Momi, Elena :: Polytechnic University of Milan, Italy
# Piantadosi, Gabriele :: DIETI, Federico II di Napoli, Italy
# Pernelle, Guillaume :: Imperial College, UK
# San Jose, Raul :: Brigham and Women's Hospital, Harvard Medical School, USA
# Nardelli, Pietro :: Brigham and Women's Hospital, Harvard Medical School, USA
# Fernandez Vidal, Sara :: ICM Brain & Spine Institute, Paris, France
# Sharp, Gregory :: Massachusetts General Hospital, Harvard Medical School, USA
# Moiraghi, Alessandro :: University of Milan, Italy
# Seco, Joao :: German Cancer Research Center (DKFZ), Germany
# Pumar Carreras, Nayra :: Canary Islands, Spain
# Afonso Suarez, Maria Dolores :: Canary Islands, Spain
# Alzola Ruiz, Juan :: Canary Islands, Spain
# Pujol, Sonia :: Brigham and Women's Hospital, Harvard Medical School, USA

Project Week 25/Next Generation GPU Volume Rendering

2017-06-28T14:51:39Z

Pieper: /* Hangout at Project Week */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==
* [http://nist.mni.mcgill.ca/?page_id=369 Simon Drouin] (Montreal Neurological Institute, Canada)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://www.sintef.no/en/all-employees/employee/?empId=541 Ole Vegard Solberg] (SINTEF, Norway)
* [https://www.kitware.com/alvaro-sanchez/ Alvaro Sanchez] (Kitware Inc., USA Remote attendance)
* [https://www.kitware.com/sankhesh-jhaveri/ Sankhesh Jhaveri] (Kitware Inc., USA Remote attendance)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Develop a specification for the next generation of GPU volume processing and rendering in VTK and Slicer

The specification should support

* Multiple input volumes for ray-casting and slice-based volume rendering
* GPU-based volume slicing and compositing
* Programmable volume rendering shader
* Smart management of volumes in GPU memory
* Possibility to run simple processing operations on the volume (e.g. Non-linear transforms)
* Consider possible complications
** GPU features not available / software only fallback
** Volumes too big to for GPU memory
|

Compare the architectures of different existing projects where parts of the required functionality has been implemented:

* [http://ibisneuronav.org Ibis Neuronav]/PRISM (Multi-volume ray-casting with programmable shaders in VTK)
* Steve Pieper's volume processing on the GPU with [https://github.com/pieper/CommonGL OpenGL in VTK and GLSL] and with [http://afruehstueck.github.io/TF.html WebGL (with Anna Fruehstueck)] and [https://www.youtube.com/watch?v=wMkuwzA7RDo WebGL2] (see videos below)
* [https://www.custusx.org/ CustusX ] (GPU volume slicing and compositing with multi-window context sharing)

Determine a sensible way to integrate all those contribution in VTK.
|

|}

==Illustrations==
https://www.dropbox.com/s/bqg1fyd42z6lawn/prism-demo-simon-drouin-imic-2016.mp4?dl=0

3D Image Filters in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=wMkuwzA7RDo&modestbranding=1&rel=0</embedvideo>
Multivolume rendering and nonlinear transforms in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=ML9_JWAz1kY&modestbranding=1&rel=0</embedvideo>

==Background and References==

[https://docs.google.com/document/d/1-4Up_Shq6oFTGhwXIF5DuiXUYsdIMlAC1oK7eNHWP_o/edit#heading=h.ut6owd65r1fu Some notes about sharing GLSL code between desktop OpenGL and WebGL]

Schott M, Pascal Grosset AV, Martin T, Pegoraro V, Smith ST, Hansen CD. Depth of Field Effects for Interactive Direct Volume Rendering. Comput Graph Forum. 2011 Jun;30(3):941-50.

Volumetric shadows and light scattering:

Kniss J, Premoze S, Hansen C, Shirley P, McPherson A. A model for volume lighting and modeling. IEEE Trans Vis Comput Graph. 2003;9(2):150–62.

Ambiant occlusion (this one should be possible to do with ray casting, but not as efficient):

Hernell F, Ljung P, Ynnerman A. Local Ambient Occlusion in Direct Volume Rendering. IEEE Trans Vis Comput Graph. 2010 Jul;16(4):548–59.

=== Planning hangout June 13 ===
(Simon, Jc, Alvaro, Sankhesh, Steve, Hina)

Recent features in VTK Volume Rendering (in master, blog post coming)
* Volume peeling - translucent geometry with volumes in GPU ray cast mapper
* Render to texture
* 2D lookup tables (value and gradient magnitude)
Work in progress
* Overlapping volumes - multiple inputs to mapper
* vtk charts to work with 2D transfer functions

Slicer to migrate to latest version once cmake hierarchy is sorted out (Jc)

Questions / discussion points:
* Ray cast vs view aligned plane-based algorithms
** depth of focus, shadows, diffuse lighting...
** How to integrate multiple features
* Nonlinear transformation
* Custom shaders
* Dynamic shader generation in python
* multiple components
** RGBA
** Independent components?
* 2D lookup tables
* Volumes that live on the GPU
** sharing across contexts
** use as input textures and render targets
** tiling?
** streaming?
* Large volumes?
* Mesa backend?
** Offscreen support for OpenGL2 backend should work in VTK now

=== Hangout at Project Week ===

* Attendees: Alvaro, Sankesh, Aashish, Andras, Steve, Jc, Simon, Ole

* Open Questions:
** What is best to accomplish at Project Week?
** What architecture is best for the future and how can we get there?

* Alvero announced that volume peeling supports the OpenGL render pass, which could support custom shaders
** two calls: Prereplace and Postreplace (as in vtkPolyDataMapper)
** newer OpenGL2 version is much more flexible than the older version in OpenGL1
** allows user to replace parts of the rending process

* Need to be able to change
** per-sample ray accumulating value
** compositing function
** initialization of ray path parameters
** control over when ray terminates
** uniforms
** textures

* RenderPath vs RenderTags example?
** Pattern is used in the vtk volume rendering mapper
** existing implementation serves as a working example for customization
** may need to define new spots to inject code (TBD)

Debugging
** Pattern to add unique identifiers to shader variables
** There are vtk hooks to help debug
** Access to compiler errors, and full shader scene
** Can use an apitrace program (linux and mac) to track opengl state

How to make it easier to customize?
** e.g. coloring samples by depth for 4D US
** high level API?
** set of worked out examples for common use cases

Next steps
* At project week:
** collect examples of things that should be simple
** provide feedback and suggestions to vtk developer
* At Kitware:
** propose a high level API for feedback
** multiple overlapping volumes
** look at sharing volumes across mappers (class to represent a volume in memory)
** shared GL context (see CustusX for worked out example of a "hacked in" way to support this)

Project Week 25/Next Generation GPU Volume Rendering

2017-06-28T14:47:05Z

Pieper: /* Hangout at Project Week */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==
* [http://nist.mni.mcgill.ca/?page_id=369 Simon Drouin] (Montreal Neurological Institute, Canada)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://www.sintef.no/en/all-employees/employee/?empId=541 Ole Vegard Solberg] (SINTEF, Norway)
* [https://www.kitware.com/alvaro-sanchez/ Alvaro Sanchez] (Kitware Inc., USA Remote attendance)
* [https://www.kitware.com/sankhesh-jhaveri/ Sankhesh Jhaveri] (Kitware Inc., USA Remote attendance)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Develop a specification for the next generation of GPU volume processing and rendering in VTK and Slicer

The specification should support

* Multiple input volumes for ray-casting and slice-based volume rendering
* GPU-based volume slicing and compositing
* Programmable volume rendering shader
* Smart management of volumes in GPU memory
* Possibility to run simple processing operations on the volume (e.g. Non-linear transforms)
* Consider possible complications
** GPU features not available / software only fallback
** Volumes too big to for GPU memory
|

Compare the architectures of different existing projects where parts of the required functionality has been implemented:

* [http://ibisneuronav.org Ibis Neuronav]/PRISM (Multi-volume ray-casting with programmable shaders in VTK)
* Steve Pieper's volume processing on the GPU with [https://github.com/pieper/CommonGL OpenGL in VTK and GLSL] and with [http://afruehstueck.github.io/TF.html WebGL (with Anna Fruehstueck)] and [https://www.youtube.com/watch?v=wMkuwzA7RDo WebGL2] (see videos below)
* [https://www.custusx.org/ CustusX ] (GPU volume slicing and compositing with multi-window context sharing)

Determine a sensible way to integrate all those contribution in VTK.
|

|}

==Illustrations==
https://www.dropbox.com/s/bqg1fyd42z6lawn/prism-demo-simon-drouin-imic-2016.mp4?dl=0

3D Image Filters in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=wMkuwzA7RDo&modestbranding=1&rel=0</embedvideo>
Multivolume rendering and nonlinear transforms in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=ML9_JWAz1kY&modestbranding=1&rel=0</embedvideo>

==Background and References==

[https://docs.google.com/document/d/1-4Up_Shq6oFTGhwXIF5DuiXUYsdIMlAC1oK7eNHWP_o/edit#heading=h.ut6owd65r1fu Some notes about sharing GLSL code between desktop OpenGL and WebGL]

Schott M, Pascal Grosset AV, Martin T, Pegoraro V, Smith ST, Hansen CD. Depth of Field Effects for Interactive Direct Volume Rendering. Comput Graph Forum. 2011 Jun;30(3):941-50.

Volumetric shadows and light scattering:

Kniss J, Premoze S, Hansen C, Shirley P, McPherson A. A model for volume lighting and modeling. IEEE Trans Vis Comput Graph. 2003;9(2):150–62.

Ambiant occlusion (this one should be possible to do with ray casting, but not as efficient):

Hernell F, Ljung P, Ynnerman A. Local Ambient Occlusion in Direct Volume Rendering. IEEE Trans Vis Comput Graph. 2010 Jul;16(4):548–59.

=== Planning hangout June 13 ===
(Simon, Jc, Alvaro, Sankhesh, Steve, Hina)

Recent features in VTK Volume Rendering (in master, blog post coming)
* Volume peeling - translucent geometry with volumes in GPU ray cast mapper
* Render to texture
* 2D lookup tables (value and gradient magnitude)
Work in progress
* Overlapping volumes - multiple inputs to mapper
* vtk charts to work with 2D transfer functions

Slicer to migrate to latest version once cmake hierarchy is sorted out (Jc)

Questions / discussion points:
* Ray cast vs view aligned plane-based algorithms
** depth of focus, shadows, diffuse lighting...
** How to integrate multiple features
* Nonlinear transformation
* Custom shaders
* Dynamic shader generation in python
* multiple components
** RGBA
** Independent components?
* 2D lookup tables
* Volumes that live on the GPU
** sharing across contexts
** use as input textures and render targets
** tiling?
** streaming?
* Large volumes?
* Mesa backend?
** Offscreen support for OpenGL2 backend should work in VTK now

=== Hangout at Project Week ===

* Attendees: Alvaro, Sankesh, Aashish, Andras, Steve, Jc, Simon, Ole

* Open Questions:
** What is best to accomplish at Project Week?
** What architecture is best for the future and how can we get there?

* Alvero announced that volume peeling supports the OpenGL render pass, which could support custom shaders
** two calls: Prereplace and Postreplace (as in vtkPolyDataMapper)
** newer OpenGL2 version is much more flexible than the older version in OpenGL1
** allows user to replace parts of the rending process

* Need to be able to change
** per-sample ray accumulating value
** compositing function
** initialization of ray path parameters
** control over when ray terminates
** uniforms
** textures

* RenderPath vs RenderTags example?
** Pattern is used in the vtk volume rendering mapper
** existing implementation serves as a working example for customization
** may need to define new spots to inject code (TBD)

Debugging
** Pattern to add unique identifiers to shader variables
** There are vtk hooks to help debug
** Access to compiler errors, and full shader scene
** Can use an apitrace program (linux and mac) to track opengl state

How to make it easier to customize?
** e.g. coloring samples by depth for 4D US
** high level API?
** set of worked out examples for common use cases

Next steps
* At project week:
** collect examples of things that should be simple
* At Kitware:
** propose a high level API for feedback
** multiple overlapping volumes
** look at sharing volumes across mappers (class to represent a volume in memory)
** shared GL context (see CustusX for worked out example of a "hacked in" way to support this)

Project Week 25/Next Generation GPU Volume Rendering

2017-06-28T14:21:36Z

Pieper: /* Planning hangout June 13 */

Project Week 25/Neuro-navigation breakout session

2017-06-27T12:49:47Z

Pieper: /* Participants */

= Introduction =

This will be an informal session that all project week participants that are interested in neuro-navigation should join. Just add your name to the participant list and show up at the session, optionally prepare 2-3 slides for introducing yourself to the group (tell about yourself, what you do in neuro-navigation, what your challenges are, what you plan to do). If you create slides then upload them to the wiki and add a link at your name.

* Time: Tuesday 2pm-3pm.
* Location: to be determined - it will be posted here.

= Participants =

If you do not have write access to the wiki then send your name (and slides) to Andras Lasso (lasso@queensu.ca).

# Andras Lasso ([http://perk.cs.queensu.ca PerkLab, Queen's]) - [[Media:20170625-NamicWeek-AndrasLassoIntro.pdf|intro slides]]
# Sara Fernández-Vidal ([http://icm-institute.org/en/ Brain & Spine Institute], Paris, France)
# Fernando Pérez-García ([http://icm-institute.org/en/ Brain & Spine Institute], Paris, France)
# Steve Pieper (Isomics, Inc.)

Project Week 25/Slicer Export to VR

2017-06-26T08:56:54Z

Pieper: Created page with "__NOTOC__ Back to Projects List ==Key Investigators== * [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA) * Mi..."

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* Mike Halle, BWH
* Juan Ruiz, Canary Islands

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|


* Determine best use of modern generation of VR technology in medical applications
** Training
** Diagnostics
** Therapy

|


* Review objectives and use cases
* Review experiments and history
* Review current generations of hardware and software
|

|}

==Illustrations==

==Background and References==

Project Week 25

2017-06-26T08:50:00Z

Pieper: /* Augmented Reality and Virtual Reality */

__NOTOC__
Back to [[Events]]

A summary of all past [[Project_Events#Past_Project_Weeks|Project Events]].

[[image:PW25.png|300px]] [[image:IEL_logo.png|225px]]
 

=Welcome to the web page for the 25th Project Week!=
It is a pleasure to announce that the 25th Project week will be held in [https://goo.gl/maps/b9CpkFxNyWN2 Catanzaro Lido] (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with [http://www.imagenglab.com ImagEngLab]. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!

This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.

Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list].

===Local Organizing Committee===
*[http://www.imagenglab.com/newsite/mf_spadea/ Maria Francesca Spadea, PhD]
*[http://www.imagenglab.com/newsite/paolo_zaffino/ Paolo Zaffino, PhD].

==Logistics==
*'''Dates:''' June 26-30, 2017. Details in the calendar below.
*'''Location:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. [mailto:prenotazioni@hotelperladelporto.it Booking]. Subject line: "Slicer Summer Project Week 2017". Special rates: Single room, full bed, 79 € per night (1 person)/ Single room, queen bed 89 € per night (1 person)/ Double room, queen bed 99 € per night (2 people)/Triple room, 110 € (3 people)
*'''Registration:''' To register please visit this [http://www.imagenglab.com/newsite/project-week page]
*'''Registration Fee:''' 320€ and it includes lunches, coffee breaks and airport connections
*'''Hotel:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. The closest airport is [http://www.lameziaairport.it/english/ Lamezia Terme Airport (IATA: SUF)].
*'''Transportation from Airport to Hotel:''' Your registration fee includes ground transportation [https://www.google.com/maps/dir/Lamezia+Terme+International+Airport,+Via+Aeroporto,+88046+Lamezia+Terme+CZ,+Italy/BEST+WESTERN+PLUS+Hotel+Perla+Del+Porto,+Via+Martiri+di+Cefalonia,+64,+88100+Catanzaro,+Italy/@38.868758,16.1564814,10z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x133fe15a3cbed47f:0x544ab120c3de78a6!2m2!1d16.2434017!2d38.9065845!1m5!1m1!1s0x134003d668252a13:0x2989caf676f45a72!2m2!1d16.6312407!2d38.827712!3e0 to/from the hotel and airport]. Please fill out this [https://goo.gl/forms/7vmhxZSHy8Z1A62z2 form] to request transportation
*'''Local points of interest (pubs, restaurants, bar):''' [https://www.google.com/maps/d/viewer?mid=1FU63ik9Do3zzP6K2kvLVTtM2at8&ll=38.86221979925013%2C16.44292274999998&z=12 map] (constantly updated)

==Calendar==
{{#widget:Google Calendar
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com
|timezone=America/New_York&dates=20170108%2F20170114
|title=NA-MIC Project Week (Timezone is Italy / GMT+02.)
|view=WEEK
|dates=20170626/20170701
}}

iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

Breakout sessions:
* [[Project_Week_25/Neuro-navigation_breakout_session|Neuro-navigation breakout session]]

=Projects=

<big>Please duplicate [https://na-mic.org/wiki/Project_Week_Template this template] to create a page for your project. </big>

Please put a brief preliminary title for your project here with some names in parenthesis for potential team members
==Deep Learning Applications==
#[[Project_Week_25/NeedleSegmentation |CNN for Needle Segmentation from MRI Images]]
#[[Project_Week_25/CNN_for_multi-plane_prostate_segmentation | CNN for multi-plane prostate segmentation]]
#[[Project_Week_25/CNN for PseudoCT Generation from T1T2 MR|CNN for PseudoCT Generation from T1/T2 MRI]]
#[[Project_Week_25/Breast Cancer Analysis in DCE-MRI | Breast Cancer Segmentation in DCE-MRI via Deep Learning Approaches]]

==Augmented Reality and Virtual Reality==
#[[Project_Week_25/Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification | Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification]]
# [[Project_Week_25/Next_Generation_GPU_Volume_Rendering | Next Generation of Volume Rendering in VTK ]]
#[[Project_Week_25/Development_and_Evaluation_of_New_AR_Visualization_Techniques_to_Support_Radiological_Interventions | Development and Evaluation of New AR Visualization Techniques to Support Radiological Interventions]]
#[[Project_Week_25/Intra-operative deformable_registration_based_on_dense_point_cloud_reconstruction |Intra-operative Deformable Registration Based on Dense Point Cloud Reconstruction for Augmented Reality in Laproscopic Surgery]]
#[[Project_Week_25/Slicer Export to VR | Slicer Export to VR]]

==Navigating Ultrasound==
# [[Project_Week_25/Tracked-Ultrasound-Standardization-IV | Tracked Ultrasound Standardization IV: Controlling US Acquisition]]
#[[Project_Week_25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation |Segmentation for Improving Image Registration of Preoperative MRI with Intraoperative Ultrasound Images for Neuro-navigation]]
==DICOM==
#[[Project_Week_25/DICOM_for_Quantitative_Imaging_and_Integration_with_Processing_Applications|DICOM for Quantitative Imaging and Integration with Processing Applications]]
#[[Project_Week_25/Conversion of DICOM Single Frame MR to Enhanced Multiframe | Conversion of DICOM Single Frame MR to Enhanced Multiframe]]
#[[Project_Week_25/DICOM Segmentation Support for Cornerstone and OHIF Viewer | DICOM Segmentation Support for Cornerstone/ OHIF Viewer]]

==Chest Image Processing==
#[[Project_Week_25/SlicerCIP_Bronchiectasis | SlicerCIP: Tool for Quantitative Analysis of Bronchiectasis]]
#[[Project_Week_25/SlicerCIP_ReportsTool | SlicerCIP: Tool for Creation of Reports for Quantitive Analysis]]
==Platform==
#[[Project_Week_25/Interactive_Manipulation_of_Plots_and_Graphs | Interactive Manipulation of Plots and Graphs]]
#[[Project_Week_25/Internationalizing Slicer Modules|Internationalizing Slicer Modules]]
#[[Project_Week_25/Interfacing Slicer to Mobile Phone-controlled Sensors|Interfacing Slicer to Mobile Phone-controlled Sensors]]
#[[Project_Week_25/Slicer and 3D Printing|Slicer and 3D Printing]]
#[[Project_Week_25/Multimodal: | Multimodal, Multiresolution, Multivolume Data]]
#[[Project_Week_25/Human-Computer_Interaction_under_sterile_conditions |Human-Computer Interaction under Sterile Conditions]]

==Applications Smorgasbord==
#[[Project_Week_25/Steerable Catheters Path Planner Extension for Brain Surgery Applications | Steerable Catheters Path Planner Extension for Brain Surgery Applications]]
#[[Project_Week_25/Slice-to-Volume Registration to Support MRI guided Interventions | Slice-to-Volume Registration to Support MRI guided Interventions ]]
#[[Project_Week_25/Surgical_Planning_In_Stereotaxy | Surgical Planning In Stereotaxy ]]
#[[Project_Week_25/SALT_Spatiotemporal_Modeling: | Slicer SALT Validation: Spatiotemporal Modeling of Subcortical Structures ]]
#[[Project_Week_25/Wrist_Kinematics: | Kinematic Analysis of the Wrist from Dynamic MRI]]
#[[Project_Week_25/EBP | External Beam Planning]]

=Registrants=

Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this [http://www.imagenglab.com/newsite/project-week/ registration site].

# Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA
# Pieper, Steve :: Isomics, Inc., USA
# Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA
# Spadea, Maria Francesca :: Magna Graecia University, Italy
# Zaffino, Paolo :: Magna Graecia University, Italy
# Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy
# Pileggi, Giampaolo :: Magna Graecia University, Italy/German Cancer Research Center (DKFZ), Germany
# Rackerseder, Julia :: Technical University of Munich, Germany
# Pinter, Csaba :: Queen's University, Canada
# Kraß, Scheherazade :: University of Bremen, Germany
# Gerig, Guido :: NYU Tandon School of Engineering, USA
# Punzo, Davide :: Kapteyn Astronomical Institute, University of Groningen, The Netherlands
# Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada
# Lasso, Andras :: School of Computing, Queen's University, Canada
# Favaro, Alberto :: Politecnico di Milano, Italy
# Leger, Etienne :: Concordia University, Canada
# Ziegler, Erik :: Ziegler Consult SAS
# Onken, Michael :: Open Connections GmbH, Germany
# Pinzi, Marlene :: Imperial College, UK
# Nitsch, Jennifer :: University of Bremen, Germany
# Moccia, Sara :: Politecnico di Milano, Italy
# Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany
# Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany
# Hansen, Christian :: University of Magdeburg, Germany
# Vegard Solberg, Ole :: Norway
# Heinrich, Florian :: University of Magdeburg, Germany
# Mewes, André :: University of Magdeburg, Germany
# Hatscher, Benjamin :: University of Magdeburg, Germany
# Hettig, Julian :: University of Magdeburg, Germany
# Meyer, Anneke :: University of Magdeburg, Germany
# Gulamhussene, Gino :: University of Magdeburg, Germany
# Cassetta, Roberto :: Politecnico di Milano, Italy
# Fillion-Robin, Jean-Christophe :: Kitware, Inc., USA
# Metzger, Jasmin :: German Cancer Research Center (DKFZ), Germany
# Fishbaugh, James :: NYU Tandon School of Engineering, USA
# Nolden, Marco :: German Cancer Research Center (DKFZ), Germany
# Nehrkorn, Jorge Quintero :: Canary Islands, Spain
# Perez Garcia, Fernando :: ICM Brain & Spine Institute, Paris, France
# De Momi, Elena :: Politecnico di Milano, Italy
# Piantadosi, Gabriele :: DIETI, Federico II di Napoli, Italy
# Pernelle, Guillaume :: Imperial College, UK
# San Jose, Raul :: Brigham and Women's Hospital, Harvard Medical School, USA
# Nardelli, Pietro :: Brigham and Women's Hospital, Harvard Medical School, USA
# Fernandez Vidal, Sara :: ICM Brain & Spine Institute, Paris, France
# Sharp, Gregory :: Massachusetts General Hospital, Harvard Medical School, USA
# Moiraghi, Alessandro :: Università degli Studi di Milano, Italy
# Seco, Joao :: German Cancer Research Center (DKFZ), Germany
# Pumar Carreras, Nayra :: Canary Islands, Spain
# Afonso Suarez, Maria Dolores :: Canary Islands, Spain
# Alzola Ruiz, Juan :: Canary Islands, Spain
# Pujol, Sonia :: Brigham and Women's Hospital, Harvard Medical School, USA

Project Week 25/Human-Computer Interaction under sterile conditions

2017-06-25T12:53:48Z

Pieper: /* Background and References */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==
*[http://isgwww.cs.uni-magdeburg.de/cas/ Christian Hansen] (University of Magdeburg, Germany)
*[http://isgwww.cs.uni-magdeburg.de/cas/team.php Julian Hettig] (University of Magdeburg, Germany)
*[http://isgwww.cs.uni-magdeburg.de/cas/team.php Benjamin Hatscher] (University of Magdeburg, Germany)
*[http://www.researchgate.net/profile/David_Black11 David Black] (University of Bremen; Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany)
*[http://www.dkfz.de/en/mic/team/people/Marco_Nolden.html Marco Nolden] (German Cancer Research Center (DKFZ), Germany)
*[http://juanruizalzola.com/about-juan/ Juan Ruiz Alzola] (University of Las Palmas de Gran Canaria, Spain)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|
Human-Computer Interaction under Sterile Conditions.
* Use with glove
* drapable display
|

# Long, intensive conceptualization (2 days) of possibilities for gesture interaction and audio feedback for it
## We will need moderation kit (paper, pencil, markers, etc)
# Prototypes of possible auditory feedback based on conceptualization
## With OSC communication protocol, David will make quick, flexible sound methods
|


|}

==Illustrations==
https://www.slicer.org/img/Slicer4Announcement-HiRes.png

==Background and References==

Example of previous related work using standard surgical gloves and OR compatible plastic draping confirmed to be compatible with sterile requirements at BWH AMIGO:
<embedvideo service="youtube">https://www.youtube.com/watch?v=zSqO2pUEodw</embedvideo>

Project Week 25/Human-Computer Interaction under sterile conditions

2017-06-25T12:52:32Z

Pieper:

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==
*[http://isgwww.cs.uni-magdeburg.de/cas/ Christian Hansen] (University of Magdeburg, Germany)
*[http://isgwww.cs.uni-magdeburg.de/cas/team.php Julian Hettig] (University of Magdeburg, Germany)
*[http://isgwww.cs.uni-magdeburg.de/cas/team.php Benjamin Hatscher] (University of Magdeburg, Germany)
*[http://www.researchgate.net/profile/David_Black11 David Black] (University of Bremen; Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany)
*[http://www.dkfz.de/en/mic/team/people/Marco_Nolden.html Marco Nolden] (German Cancer Research Center (DKFZ), Germany)
*[http://juanruizalzola.com/about-juan/ Juan Ruiz Alzola] (University of Las Palmas de Gran Canaria, Spain)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|
Human-Computer Interaction under Sterile Conditions.
* Use with glove
* drapable display
|

# Long, intensive conceptualization (2 days) of possibilities for gesture interaction and audio feedback for it
## We will need moderation kit (paper, pencil, markers, etc)
# Prototypes of possible auditory feedback based on conceptualization
## With OSC communication protocol, David will make quick, flexible sound methods
|


|}

==Illustrations==
https://www.slicer.org/img/Slicer4Announcement-HiRes.png

==Background and References==

Example of previous related work:
<embedvideo service="youtube">https://www.youtube.com/watch?v=zSqO2pUEodw</embedvideo>

Project Week 25/SlicerCIP ReportsTool

2017-06-25T12:47:14Z

Pieper: /* Background and References */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

*Pietro Nardelli (Brigham and Women's Hospital, Harvard Medical School, USA)
*Jorge Onieva Onieva (Brigham and Women's Hospital, Harvard Medical School, USA)
*[https://lmi.med.harvard.edu/people/raul-san-jose-estepar Raúl San José Estépar] (Brigham and Women's Hospital, Harvard Medical School, USA)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|
*The goal of this project is to create a new tool for SlicerCIP that allows the creation of a PDF report that summarize and illustrate quantitive analysis.

|
* Implement a HTML template for quantitative analysis report
* Implement a new module that fills the HTML with images and data

|

|}

==Illustrations==

==Background and References==

*[https://github.com/acil-bwh/SlicerCIP SlicerCIP]

[https://wiki.qt.io/Exporting_a_document_to_PDF Using QPrinter] should be possible.

Project Week 25/DICOM Segmentation Support for Cornerstone and OHIF Viewer

2017-06-23T14:02:38Z

Pieper: /* Project Description */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

*Erik Ziegler (Open Health Imaging Foundation, USA)
*[http://www.spl.harvard.edu/pages/People/pieper Steve Pieper] (Isomics, Inc., USA)
*[https://www.dkfz.de/en/mic/team/people/Marco_Nolden.html Marco Nolden] (German Cancer Research Center (DKFZ), Germany)
*[http://www.spl.harvard.edu/pages/People/tkapur Tina Kapur] (Brigham and Women's Hospital, Harvard Medical School, USA)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|
* Overall goal is to facilitate zero-footprint image annotation
** Runs in browser
** Fast and usable by clinicians
** Interoperable (DICOM-based)
* Cornerstone has great platform
** Needs segmentation display
** Needs suite of editing tools (plugin architecture)
** Needs DICOM Segmentation object support
** Needs DICOM Structured Report container for image measurements (lines, points, ROIs)
|
* Review architectures and experiments so far
** SAKE viewer tool (http://sakeviewer.com/)
** Experiments with Segmentation read/write in javascript
** Discussions and prototypes with Dana-Farber Cancer Institute
* Try building an end-to-end proof of concept
** Read grayscale and segmentation
** Edit segmentation
** Write out segmentation (store to server)
* Discuss how to harden and integrate with production systems
* What other work is needed
|

|}

==Illustrations==
[[image:OHIF Study List.png|800px]]

[[image:OHIF Viewer Screenshot.png|800px]]

==Background and References==

SIIM2017 Learning Lab introduction to Cornerstone / OHIF
* Slides: https://www.dropbox.com/s/bg4mm7s9kek0708/SIIM2017%20-%20Build%20your%20own%20zero%20footprint%20web%20viewer.pptx?dl=1
* Repository: https://github.com/chafey/byozfwv

OHIF Community Forum Slides
* https://docs.google.com/presentation/d/1iYZoU7v7KHSLHiKwH1_9_wweAkG7RGnyxrWeeHva4zQ/edit#slide=id.g17e0507313_1_46
* https://docs.google.com/presentation/d/1K9Y6eP5DYTXoDlfwCZE6GkCUp83AK4_40YQS0dlzVBo/edit#slide=id.g17df770847_0_0

Repositories
* https://github.com/chafey/cornerstone
* https://github.com/chafey/cornerstoneTools
* https://github.com/chafey/cornerstoneWADOImageLoader
* https://github.com/OHIF/Viewers

Work thus far on segmentations / overlays in Cornerstone
* https://github.com/chafey/cornerstone/pull/68
* https://github.com/chafey/cornerstone/pull/109
* https://rawgit.com/swederik/cornerstone/composition/example/testSeg/index.html
* http://sakeviewer.com/

Project Week 25/DICOM for Quantitative Imaging and Integration with Processing Applications

2017-06-20T13:38:40Z

Pieper:

Project Week 25/DICOM Segmentation Support for Cornerstone and OHIF Viewer

2017-06-16T19:27:56Z

Pieper: /* Project Description */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

*Erik Ziegler (Institution)
*Steve Pieper (Isomics, Inc.)
*Marco Nolden (DKFZ)
*[http://www.spl.harvard.edu/pages/People/tkapur Tina Kapur] (Brigham and Women's Hospital, Harvard Medical School)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|
* Overall goal is to facilitate zero-footprint image annotation
** Runs in browser
** Fast and usable by clinicians
** Interoperable (DICOM-based)
* Cornerstone has great platform
** Needs segmentation display
** Needs suite of editing tools (plugin architecture)
** Needs DICOM Segmentation object support
|
* Review architectures and experiments so far
** SAKE viewer tool
** Experiments with Segmentation read/write in javascript
** Discussions and prototypes with Dana Farber
* Try building an end-to-end proof of concept
** Read grayscale and segmentation
** Edit segmentation
** Write out segmentation (store to server)
* Discuss how to harden and integrate with production systems
* What other work is needed
|

|}

==Illustrations==

https://www.slicer.org/img/Slicer4Announcement-HiRes.png

<embedvideo service="youtube">https://www.youtube.com/watch?v=MKLWzD0PiIc</embedvideo>

==Background and References==

Project Week 25/DICOM Segmentation Support for Cornerstone and OHIF Viewer

2017-06-16T19:22:36Z

Pieper: /* Key Investigators */

User:Rackerseder

2017-06-14T13:25:35Z

Pieper: Creating user page for new user.

Everything is about brains, brains, brains at the moment, since I work for the EU-funded EDEN2020 project (http://eden2020.eu/). Personal research interests and topics I am working on in my PhD are:

Computer assisted neurosurgery
Functional and anatomical atlas generation
Multi-modal image registration
Rapid prototyping
Tissue conservation techniques
Tissue models for functional, anatomical, multi-modal imaging

User talk:Rackerseder

2017-06-14T13:25:35Z

Pieper: Welcome!

'''Welcome to ''NAMIC''!'''
We hope you will contribute much and well.
You will probably want to read the [https://www.mediawiki.org/wiki/Special:MyLanguage/Help:Contents help pages].
Again, welcome and have fun! [[User:Pieper|Pieper]] ([[User talk:Pieper|talk]]) 09:25, 14 June 2017 (EDT)

User:Npumar

2017-06-14T13:24:54Z

Pieper: Creating user page for new user.

Staff of the MACbioIdi Project, located in the Canary Islands, from the University of Las Palmas de Gran Canaria. Our project focuses on Medical Technology for Sustainable Development (training and technology), with links across the atlantican african coast (Mauritania, Cape Vert and Senegal).
The MACbioIDi Project has 31 partners in the Canary Islands, Madeira, Azores, Cape Verde, Mauritania, Senegal mainland Spain and the USA. Its goal is to develop medical technology and educational programs, which are usable in the participant territories, paying attention to social and business transfer. The collaboration is carried out on 3D Slicer, an the open source software platform in continuous evolution. Over the last 20 years, 3D Slicer has been developed by an international community led by the Surgical Planning Lab, at Harvard Medical School and Brigham and Women’s Hospital, in Boston (USA), a MACbioIDi Project associate parter

User talk:Npumar

2017-06-14T13:24:54Z

Pieper: Welcome!

Project Week 25/Next Generation GPU Volume Rendering

2017-06-13T16:13:21Z

Pieper: /* Illustrations */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [http://nist.mni.mcgill.ca/?page_id=369 Simon Drouin] (Montreal Neurological Institute, Canada)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://www.sintef.no/en/all-employees/employee/?empId=541 Ole Vegard Solberg] (SINTEF, Norway)
* [https://www.kitware.com/alvaro-sanchez/ Alvaro Sanchez] (Kitware, USA Remote attendance
* [https://www.kitware.com/sankhesh-jhaveri/ Sankhesh Jhaveri] (Kitware, USA Remote attendance

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Develop a specification for the next generation of GPU volume processing and rendering in VTK and Slicer

The specification should support

* Multiple input volumes for ray-casting and slice-based volume rendering
* GPU-based volume slicing and compositing
* Programmable volume rendering shader
* Smart management of volumes in GPU memory
* Possibility to run simple processing operations on the volume (e.g. Non-linear transforms)
* Consider possible complications
** GPU features not available / software only fallback
** Volumes too big to for GPU memory
|

Compare the architectures of different existing projects where parts of the required functionality has been implemented:

* [http://ibisneuronav.org Ibis Neuronav]/PRISM (Multi-volume ray-casting with programmable shaders in VTK)
* Steve Pieper's volume processing on the GPU with [https://github.com/pieper/CommonGL OpenGL in VTK and GLSL] and with [http://afruehstueck.github.io/TF.html WebGL (With Anna Fruehstueck)] and [https://www.youtube.com/watch?v=wMkuwzA7RDo WebGL2] (see videos below)
* [https://www.custusx.org/ CustusX ] (GPU volume slicing and compositing with multi-window context sharing)

Determine a sensible way to integrate all those contribution in VTK.
|

TODO
|}

==Illustrations==
https://www.dropbox.com/s/bqg1fyd42z6lawn/prism-demo-simon-drouin-imic-2016.mp4?dl=0

3D Image Filters in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=wMkuwzA7RDo&modestbranding=1&rel=0</embedvideo>
Multivolume rendering and nonlinear transforms in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=ML9_JWAz1kY&modestbranding=1&rel=0</embedvideo>

==Background and References==

[https://docs.google.com/document/d/1-4Up_Shq6oFTGhwXIF5DuiXUYsdIMlAC1oK7eNHWP_o/edit#heading=h.ut6owd65r1fu Some notes about sharing GLSL code between desktop OpenGL and WebGL]

Schott M, Pascal Grosset AV, Martin T, Pegoraro V, Smith ST, Hansen CD. Depth of Field Effects for Interactive Direct Volume Rendering. Comput Graph Forum. 2011 Jun;30(3):941–50.

Volumetric shadows and light scattering:

Kniss J, Premoze S, Hansen C, Shirley P, McPherson A. A model for volume lighting and modeling. IEEE Trans Vis Comput Graph. 2003;9(2):150–62.

Ambiant occlusion (this one should be possible to do with ray casting, but not as efficient):

Hernell F, Ljung P, Ynnerman A. Local Ambient Occlusion in Direct Volume Rendering. IEEE Trans Vis Comput Graph. 2010 Jul;16(4):548–59.

=== Planning hangout June 13 ===
(Simon, Jc, Alvaro, Sankhesh, Steve, Hina)

Recent features in VTK Volume Rendering (in master, blog post coming)
* Volume peeling - translucent geometry with volumes in GPU ray cast mapper
* Render to texture
* 2D lookup tables (value and gradient magnitude)
Work in progress
* Overlapping volumes - multiple inputs to mapper
* vtk charts to work with 2D transfer functions

Slicer to migrate to latest version once cmake hierarchy is sorted out (Jc)

Questions / discussion points:
* Ray cast vs view aligned plane-based algorithms
** depth of focus, shadows, diffuse lighting...
** How to integrate multiple features
* Nonlinear transformation
* Custom shaders
* Dynamic shader generation in python
* multiple components
** RGBA
** Independent components?
* 2D lookup tables
* Volumes that live on the GPU
** sharing across contexts
** use as input textures and render targets
** tiling?
** streaming?
* Large volumes?
* Mesa backend?
** Offscreen support for OpenGL2 backend should work in VTK now

Project Week 25/Next Generation GPU Volume Rendering

2017-06-13T16:13:10Z

Pieper: /* Background and References */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [http://nist.mni.mcgill.ca/?page_id=369 Simon Drouin] (Montreal Neurological Institute, Canada)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://www.sintef.no/en/all-employees/employee/?empId=541 Ole Vegard Solberg] (SINTEF, Norway)
* [https://www.kitware.com/alvaro-sanchez/ Alvaro Sanchez] (Kitware, USA Remote attendance
* [https://www.kitware.com/sankhesh-jhaveri/ Sankhesh Jhaveri] (Kitware, USA Remote attendance

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Develop a specification for the next generation of GPU volume processing and rendering in VTK and Slicer

The specification should support

* Multiple input volumes for ray-casting and slice-based volume rendering
* GPU-based volume slicing and compositing
* Programmable volume rendering shader
* Smart management of volumes in GPU memory
* Possibility to run simple processing operations on the volume (e.g. Non-linear transforms)
* Consider possible complications
** GPU features not available / software only fallback
** Volumes too big to for GPU memory
|

Compare the architectures of different existing projects where parts of the required functionality has been implemented:

* [http://ibisneuronav.org Ibis Neuronav]/PRISM (Multi-volume ray-casting with programmable shaders in VTK)
* Steve Pieper's volume processing on the GPU with [https://github.com/pieper/CommonGL OpenGL in VTK and GLSL] and with [http://afruehstueck.github.io/TF.html WebGL (With Anna Fruehstueck)] and [https://www.youtube.com/watch?v=wMkuwzA7RDo WebGL2] (see videos below)
* [https://www.custusx.org/ CustusX ] (GPU volume slicing and compositing with multi-window context sharing)

Determine a sensible way to integrate all those contribution in VTK.
|

TODO
|}

==Illustrations==
3D Image Filters in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=wMkuwzA7RDo&modestbranding=1&rel=0</embedvideo>
Multivolume rendering and nonlinear transforms in WebGL2
<embedvideo service="youtube">https://www.youtube.com/watch?v=ML9_JWAz1kY&modestbranding=1&rel=0</embedvideo>

==Background and References==

[https://docs.google.com/document/d/1-4Up_Shq6oFTGhwXIF5DuiXUYsdIMlAC1oK7eNHWP_o/edit#heading=h.ut6owd65r1fu Some notes about sharing GLSL code between desktop OpenGL and WebGL]

Schott M, Pascal Grosset AV, Martin T, Pegoraro V, Smith ST, Hansen CD. Depth of Field Effects for Interactive Direct Volume Rendering. Comput Graph Forum. 2011 Jun;30(3):941–50.

Volumetric shadows and light scattering:

Kniss J, Premoze S, Hansen C, Shirley P, McPherson A. A model for volume lighting and modeling. IEEE Trans Vis Comput Graph. 2003;9(2):150–62.

Ambiant occlusion (this one should be possible to do with ray casting, but not as efficient):

Hernell F, Ljung P, Ynnerman A. Local Ambient Occlusion in Direct Volume Rendering. IEEE Trans Vis Comput Graph. 2010 Jul;16(4):548–59.

=== Planning hangout June 13 ===
(Simon, Jc, Alvaro, Sankhesh, Steve, Hina)

Recent features in VTK Volume Rendering (in master, blog post coming)
* Volume peeling - translucent geometry with volumes in GPU ray cast mapper
* Render to texture
* 2D lookup tables (value and gradient magnitude)
Work in progress
* Overlapping volumes - multiple inputs to mapper
* vtk charts to work with 2D transfer functions

Slicer to migrate to latest version once cmake hierarchy is sorted out (Jc)

Questions / discussion points:
* Ray cast vs view aligned plane-based algorithms
** depth of focus, shadows, diffuse lighting...
** How to integrate multiple features
* Nonlinear transformation
* Custom shaders
* Dynamic shader generation in python
* multiple components
** RGBA
** Independent components?
* 2D lookup tables
* Volumes that live on the GPU
** sharing across contexts
** use as input textures and render targets
** tiling?
** streaming?
* Large volumes?
* Mesa backend?
** Offscreen support for OpenGL2 backend should work in VTK now

Project Week 25/Next Generation GPU Volume Rendering

2017-06-13T14:52:12Z

Pieper: /* Background and References */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-13T14:43:34Z

Pieper: /* Background and References */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-13T14:32:52Z

Pieper: /* Background and References */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-13T14:11:07Z

Pieper: /* Background and References */

Project Week 25/Conversion of DICOM Single Frame MR to Enhanced Multiframe

2017-06-12T20:38:30Z

Pieper: /* Background and References */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [https://www.linkedin.com/in/michael-onken-41617211/ Michael Onken] (OpenConnections, Germany)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://perk.cs.queensu.ca/users/pinter Csaba Pinter] (Queen's University, Canada)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Create tools and best practices for creating DICOM standard compliant multiframe MR instances.
* Define target use cases and input datasets
** What acquisition protocols will we address
** What sample data should we use to drive development
* Try to be 'document driven' in the sense that conversion should be parameterized by [https://github.com/QIICR/WorkingDocuments/tree/270ae183ce01484c1b0dda0614d283873375d2c1/DICOMEnhancedStorage/InformationObjectDefinitionDocuments this document from David Clunie]
** automatically parse xml
** apply to specific datasets
|

* Discuss implementation strategies and tool options
* Focus on a specific example to start
|

|}

==Illustrations==

==Background and References==

* [https://github.com/QIICR/ProjectIssuesAndWiki/wiki/DICOM-Enhanced-Multi-frame-for-data-exchange QIICR wiki page on the topic]
* Compare and contrast with [https://github.com/pieper/sites/tree/gh-pages/DICOMzero this javascript prototype]
* [http://slicer.kitware.com/midas3/download/item/250727/seg2013_nac_hncma_20160817.tar.bz2 Example multiframe MR and SEG of the SPL brain atlas]

Project Week 25/Next Generation GPU Volume Rendering

2017-06-09T17:34:05Z

Pieper: /* Illustrations */

Project Week 25/Conversion of DICOM Single Frame MR to Enhanced Multiframe

2017-06-09T13:59:51Z

Pieper: /* Project Description */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [https://www.linkedin.com/in/michael-onken-41617211/ Michael Onken] (OpenConnections, Germany)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://perk.cs.queensu.ca/users/pinter Csaba Pinter] (Queen's University, Canada)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Create tools and best practices for creating DICOM standard compliant multiframe MR instances.
* Define target use cases and input datasets
** What acquisition protocols will we address
** What sample data should we use to drive development
* Try to be 'document driven' in the sense that conversion should be parameterized by [https://github.com/QIICR/WorkingDocuments/tree/270ae183ce01484c1b0dda0614d283873375d2c1/DICOMEnhancedStorage/InformationObjectDefinitionDocuments this document from David Clunie]
** automatically parse xml
** apply to specific datasets
|

* Discuss implementation strategies and tool options
* Focus on a specific example to start
|

TODO
|}

==Illustrations==

==Background and References==

* [https://github.com/QIICR/ProjectIssuesAndWiki/wiki/DICOM-Enhanced-Multi-frame-for-data-exchange QIICR wiki page on the topic]
* Compare and contrast with [https://github.com/pieper/sites/tree/gh-pages/DICOMzero this javascript prototype]

Project Week 25/Conversion of DICOM Single Frame MR to Enhanced Multiframe

2017-06-09T13:58:42Z

Pieper: /* Background and References */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [https://www.linkedin.com/in/michael-onken-41617211/ Michael Onken] (OpenConnections, Germany)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://perk.cs.queensu.ca/users/pinter Csaba Pinter] (Queen's University, Canada)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Create tools and best practices for creating DICOM standard compliant multiframe MR instances.
* Define target use cases and input datasets
** What acquisition protocols will we address
** What sample data should we use to drive development
* Try to be 'document driven' in the sense that conversion should be parameterized by [https://github.com/QIICR/WorkingDocuments/tree/270ae183ce01484c1b0dda0614d283873375d2c1/DICOMEnhancedStorage/InformationObjectDefinitionDocuments this document from David Clunie]
** automatically parse xml
** apply to specific datasets

|

* Discuss implementation strategies and tool options
* Focus on a specific example to start
|

TODO
|}

==Illustrations==

==Background and References==

* [https://github.com/QIICR/ProjectIssuesAndWiki/wiki/DICOM-Enhanced-Multi-frame-for-data-exchange QIICR wiki page on the topic]
* Compare and contrast with [https://github.com/pieper/sites/tree/gh-pages/DICOMzero this javascript prototype]

Project Week 25/Conversion of DICOM Single Frame MR to Enhanced Multiframe

2017-06-09T13:55:05Z

Pieper: /* Key Investigators */

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [https://www.linkedin.com/in/michael-onken-41617211/ Michael Onken] (OpenConnections, Germany)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://perk.cs.queensu.ca/users/pinter Csaba Pinter] (Queen's University, Canada)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Create tools and best practices for creating DICOM standard compliant multiframe MR instances.
* Define target use cases and input datasets
** What acquisition protocols will we address
** What sample data should we use to drive development
* Try to be 'document driven' in the sense that conversion should be parameterized by [https://github.com/QIICR/WorkingDocuments/tree/270ae183ce01484c1b0dda0614d283873375d2c1/DICOMEnhancedStorage/InformationObjectDefinitionDocuments this document from David Clunie]
** automatically parse xml
** apply to specific datasets

|

* Discuss implementation strategies and tool options
* Focus on a specific example to start
|

TODO
|}

==Illustrations==

==Background and References==

[https://github.com/QIICR/ProjectIssuesAndWiki/wiki/DICOM-Enhanced-Multi-frame-for-data-exchange QIICR wiki page on the topic]
Compare and contrast with [https://github.com/pieper/sites/tree/gh-pages/DICOMzero this javascript prototype]

Project Week 25/Conversion of DICOM Single Frame MR to Enhanced Multiframe

2017-06-09T13:53:30Z

Pieper:

__NOTOC__

Back to [[Project_Week_25#Projects|Projects List]]

==Key Investigators==

* [http:// Michael Onken] (OpenConnections, Germany)
* [http://www.spl.harvard.edu/pages/People/pieper Steve Pieper ] (Isomics Inc., USA)
* [http://perk.cs.queensu.ca/users/lasso Andras Lasso] (Queen's University, Canada)
* [http://perk.cs.queensu.ca/users/pinter Csaba Pinter] (Queen's University, Canada)

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

Create tools and best practices for creating DICOM standard compliant multiframe MR instances.
* Define target use cases and input datasets
** What acquisition protocols will we address
** What sample data should we use to drive development
* Try to be 'document driven' in the sense that conversion should be parameterized by [https://github.com/QIICR/WorkingDocuments/tree/270ae183ce01484c1b0dda0614d283873375d2c1/DICOMEnhancedStorage/InformationObjectDefinitionDocuments this document from David Clunie]
** automatically parse xml
** apply to specific datasets

|

* Discuss implementation strategies and tool options
* Focus on a specific example to start
|

TODO
|}

==Illustrations==

==Background and References==

[https://github.com/QIICR/ProjectIssuesAndWiki/wiki/DICOM-Enhanced-Multi-frame-for-data-exchange QIICR wiki page on the topic]
Compare and contrast with [https://github.com/pieper/sites/tree/gh-pages/DICOMzero this javascript prototype]

Project Week 25/Conversion of DICOM Single Frame MR to Enhanced Multiframe

2017-06-09T13:47:20Z

Pieper: Created page with "__NOTOC__ Back to Projects List ==Key Investigators== * [http:// Michael Onken] (OpenConnections, Germany) * [http://www.spl.harvard.edu/page..."

Project Week 25

2017-06-09T13:38:23Z

Pieper: /* Projects */

__NOTOC__
Back to [[Events]]

A summary of all past [[Project_Events#Past_Project_Weeks|Project Events]].

[[image:PW25.png|300px]] [[image:IEL_logo.png|225px]]
 

=Welcome to the web page for the 25th Project Week!=
It is a pleasure to announce that the 25th Project week will be held in [https://goo.gl/maps/b9CpkFxNyWN2 Catanzaro Lido] (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with [http://www.imagenglab.com ImagEngLab]. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!

This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.

Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list].

===Local Organizing Committee===
*[http://www.imagenglab.com/newsite/mf_spadea/ Maria Francesca Spadea, PhD]
*[http://www.imagenglab.com/newsite/paolo_zaffino/ Paolo Zaffino, PhD].

==Videoconferences for preparation==
Time: Wednesday 9am EDT (GMT -4), April 15 to June 21, 2017
URL: [https://zoom.us/j/879371330 click here] to join the videoconference (zoom is the tool as of May 31)

#(Tina Kapur) Hangout #1: April 5 ([[PW25 Hangouts Notes|Notes]])
#(Steve Pieper) Hangout #2: April 12: Web browser based computing: Dockerized Slicer with remote computing and GPU computing; Cornerstone/LesionTracker OHIF; XTK->AMI (threejs); ePad; vtk.js; QWebEngine;
#(Andras Lasso) Hangout #3: April 19: Connecting devices such as surgical navigation, ultrasound, 3D Slicer, PLUS, OpenIGTLink, Augmented reality;
#(Tina Kapur) Hangout #4: April 26: Deep Learning for Detection of Cancer and Instruments;
#(Simon Drouin) Hangout #5: May 3: Volume Rendering, Augmented Reality, and Virtual Reality. [https://docs.google.com/document/d/1UwdSzjnDm1yEeQ44OEhXWbH6V83Uo1Cd4KngxoyrRdI/edit Notes];
#(Tina Kapur) Hangout #6: May 10: For new participants: What is project week and how to get the most out of participating in it?
#(Andrey Fedorov) Hangout #7: May 17:DICOM for Quantitative Imaging and integration with processing applications. ([http://bit.ly/2017NSPW-DICOM notes])
#(Tina Kapur) Hangout #8: May 24:Discussion of Projects and teams that have been provided on the wiki page by participants, internationalization strategy for Slicer.
#(Francesca Spadea) Hangout #9: May 31: Review of local logistics -- all registered attendees should join
#(Tina Kapur) Hangout #10: June 7: Discussion of Projects, Project Pages
#(TBD) Hangout #11: June 14: Review of Project Pages
#(Francesca Spadea) Hangout #12: June 21: Review of local logistics -- all registered attendees with questions should join

==Logistics==
*'''Dates:''' June 26-30, 2017. Consider staying for one more day (leaving Sunday morning), as a day off in a gorgeous sea place is planned on July 1st. More details in the calendar below.
*'''Location:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]
**[mailto:prenotazioni@hotelperladelporto.it Booking]. Subject line: "Slicer Summer Project Week 2017".
***Special rates are:
****Single room, full bed, 79 € per night (1 person)
****Single room, queen bed 89 € per night (1 person)
****Double room, queen bed 99 € per night (2 people)
****Triple room, 110 € (3 people)
*'''Registration:''' To register please visit this [http://www.imagenglab.com/newsite/project-week page]
*'''Registration Fee:''' 320€ and it includes lunches, coffee breaks and airport connections
*'''Hotel:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. The closest airport is [http://www.lameziaairport.it/english/ Lamezia Terme Airport (IATA: SUF)].
*'''Transportation from Airport to Hotel:''' Your registration fee includes ground transportation [https://www.google.com/maps/dir/Lamezia+Terme+International+Airport,+Via+Aeroporto,+88046+Lamezia+Terme+CZ,+Italy/BEST+WESTERN+PLUS+Hotel+Perla+Del+Porto,+Via+Martiri+di+Cefalonia,+64,+88100+Catanzaro,+Italy/@38.868758,16.1564814,10z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x133fe15a3cbed47f:0x544ab120c3de78a6!2m2!1d16.2434017!2d38.9065845!1m5!1m1!1s0x134003d668252a13:0x2989caf676f45a72!2m2!1d16.6312407!2d38.827712!3e0 to/from the hotel and airport].
** Please fill out this [https://goo.gl/forms/7vmhxZSHy8Z1A62z2 form] to request transportation
*'''Local points of interest (pubs, restaurants, bar):''' [https://www.google.com/maps/d/viewer?mid=1FU63ik9Do3zzP6K2kvLVTtM2at8&ll=38.86221979925013%2C16.44292274999998&z=12 map] (constantly updated)

==Calendar==
{{#widget:Google Calendar
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com
|timezone=America/New_York&dates=20170108%2F20170114
|title=NA-MIC Project Week (Timezone is Italy / GMT+02.)
|view=WEEK
|dates=20170626/20170701
}}

iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

=Projects=

<big>Please duplicate [https://na-mic.org/wiki/Project_Week_Template this template] to create a page for your project. </big>

Please put a brief preliminary title for your project here with some names in parenthesis for potential team members

#[[Project_Week_25/NeedleSegmentation | Needle Segmentation]]
#[[Project_Week_25/Human-Computer_Interaction_under_sterile_conditions |Human-Computer Interaction under Sterile Conditions]]
# [[Project_Week_25/Next_Generation_GPU_Volume_Rendering | Next Generation of Volume Rendering in VTK ]]
# [[Project_Week_25/Tracked-Ultrasound-Standardization-IV | Tracked Ultrasound Standardization IV: Controlling US Acquisition]]
#[[Project_Week_25/Intra-operative deformable_registration_based_on_dense_point_cloud_reconstruction |Intra-operative Deformable Registration Based on Dense Point Cloud Reconstruction]]
#[[Project_Week_25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation |Segmentation for Improving Image Registration of Preoperative MRI with Intraoperative Ultrasound Images for Neuro-navigation]]
#[[Project_Week_25/Deep_Learning_Data_augmentation_for_prostate_segmentation | Deep Learning: Data Augmentation for Prostate Segmentation]]
#DICOM Segmentation Support for Cornerstone / OHIF Viewer (Erik Ziegler, Steve Pieper, Marco Nolden, Tina Kapur)
#[[Project_Week_25/Conversion of DICOM Single Frame MR to Enhanced Multiframe | Conversion of DICOM Single Frame MR to Enhanced Multiframe]] (Michael Onken, Steve Pieper, Andras Lasso, Csaba Pinter)
#[[Project_Week_25/Development_and_Evaluation_of_New_AR_Visualization_Techniques_to_Support_Radiological_Interventions | Development and Evaluation of New AR Visualization Techniques to Support Radiological Interventions]]
#[[Project_Week_25/Interactive_Manipulation_of_Plots_and_Graphs | Interactive Manipulation of Plots and Graphs: i) Panning; ii) Click and Drag; iii) Data Selection (Davide Punzo, Steve Pieper, Jean-Christophe Fillion-Robin)]]
#Steerable Catheters Path Planner Extension for Brain Surgery Applications (Alberto Favaro, Marlene Pinzi)
#Improving Depth Perception in Interventional Augmented Reality Visualization/(+Sonification?) (Simon Drouin, Christian Hansen, David Black)
#DICOM for Quantitative Imaging and Integration with Processing Applications (Jasmin Metzger, Marco Nolden, Steve Pieper)
#CNN for PseudoCT Generation from T1/T2 MRI (Giampaolo Pileggi, Paolo Zaffino, Salvatore Scaramuzzino, Maria Francesca Spadea, Gino Gulamhussene, Anneke Meyer)
#Internationalizing Slicer Modules (Juan Ruiz Alzola)
#Interfacing Slicer to Mobile Phone-controlled Sensors (Juan Ruiz Alzola)
#Slicer and 3D Printing (Juan Ruiz Alzola, Mike Halle, Christian Hansen)
#Slicer Export to VR (Juan Ruiz Alzola, Mike Halle,)
#2D Slice to 3D Volume Registration to Support Radiologic Interventions (Gino Gulamhussene)

=Registrants=

Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this [http://www.imagenglab.com/newsite/project-week/ registration site].

# Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA
# Pieper, Steve :: Isomics, Inc., USA
# Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA
# Spadea, Maria Francesca :: Magna Graecia University, Italy
# Zaffino, Paolo :: Magna Graecia University, Italy
# Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy
# Pileggi, Giampaolo :: Magna Graecia University, Italy/DKFZ, Germany
# Rackerseder, Julia :: Technische Universität München, Germany
# Pinter, Csaba :: Queen's University, Canada
# Kraß, Scheherazade :: University of Bremen, Germany
# Gerig, Guido :: NYU Tandon School of Engineering, USA
# Punzo, Davide :: Kapteyn Astronomical Institute, Netherlands
# Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada
# Lasso, Andras :: School of Computing, Queen's University, Canada
# Favaro, Alberto :: Politecnico di Milano, Italy
# Leger, Etienne :: Concordia University, Canada
# Ziegler, Erik :: Ziegler Consult SAS
# Onken, Michael :: Open Connections GmbH, Germany
# Pinzi, Marlene :: Imperial College, UK
# Nitsch, Jennifer :: University Of Bremen, Germany
# Moccia, Sara :: Politecnico di Milano, Italy
# Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany
# Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany
# Hansen, Christian :: Universität Magdeburg, Germany
# Vegard Solberg, Ole :: Norway
# Heinrich, Florian :: Universität Magdeburg, Germany
# Mewes, André :: Universität Magdeburg, Germany
# Hatscher, Benjamin :: Universität Magdeburg, Germany
# Hettig, Julian :: Universität Magdeburg, Germany
# Meyer, Anneke :: Universität Magdeburg, Germany
# Gulamhussene, Gino :: Universität Magdeburg, Germany
# Cassetta, Roberto :: Politecnico di Milano, Italy
# Fillion-Robin, Jean-Christophe :: Kitware, USA
# Metzger, Jasmin :: DKFZ, Germany
# Fishbaugh, James :: NYU Tandon School of Engineering, USA
# Nolden, Marco :: DKFZ, Germany
# Jorge Quintero Nehrkorn :: Canary Islands, Spain

Project Week 25/Next Generation GPU Volume Rendering

2017-06-08T19:49:15Z

Pieper: /* Illustrations */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-08T19:45:54Z

Pieper: /* Illustrations */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-08T19:41:30Z

Pieper: /* Project Description */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-08T19:40:35Z

Pieper: /* Illustrations */

Project Week 25/Next Generation GPU Volume Rendering

2017-06-08T19:37:49Z

Pieper: /* Illustrations */