NAMIC Wiki - User contributions [en]

2013 Progress Report

2013-01-31T21:14:57Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/7/2013: LOI goes to subs (Rachana)
*4/4/2013: Signed Subcontractor's Documents due back to BWH (Rachana)
*4/8/2013: Review by Radiology Administration (Trey/Jean)
*4/12/2013: Review by BWH Research Admin
*4/29/2013: Signed Facepage and budget docs due back to Katie M for page numbering (Katie)
*4/30/2013: Ship it to NIH

==Scientific Report Timeline==
*10/13/2012: wiki page setup for progress report (Ann)
*TBA: all sections to be completed by owners
*TBA: check NIH compliance of all publications in Pubmed (Katie)
*TBA: create final report (Ann)
*TBA: Update web pages with any new materials from report (Ann)
*TBA: create full publications list (Katie)
*TBA: final review (Tina, Ron)
*TBA: final pdf created and submitted to Rachana (Katie)
==New Reporting Metrics for the Annual Progress Report==

*[[Media:Faculty_Information_Fields.v3.docx| Template for Reporting Faculty Metrics]]
*[[Media:NA-MIC_Personnel_Roster.xls | NA-MIC Personnel Roster]]

==Other Reporting Requirements==

*[[Media:1A_Center_Summary_Table.docx | Center Summary Table]]

==Scientific Progress Report==
*[[Media:Progress_Report_Template_National_Centers_for_Biomedical_Computing_2.1.docx | New Progress Report Template]]
*[[Media:NA-MIC_IMPACT_STATEMENT.pdf | NA-MIC IMPACT STATEMENT 2012]]
*[[Wiki_page_for_2013_Progress_Report_Assignments]]‎
*[[Wiki_page_for_2013_Preliminary_Draft]]

2013 Progress Report

2013-01-31T21:14:12Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/7/2013: LOI goes to subs (Rachana)
*4/4/2013: Signed Subcontractor's Documents due back to BWH
*4/8/2013: Review by Radiology Administration (Trey/Jean)
*4/12/2013: Review by BWH Research Admin
*4/29/2013: Signed Facepage and budget docs due back to Katie M for page numbering (Katie)
*4/30/2013: Ship it to NIH

==Scientific Report Timeline==
*10/13/2012: wiki page setup for progress report (Ann)
*TBA: all sections to be completed by owners
*TBA: check NIH compliance of all publications in Pubmed (Katie)
*TBA: create final report (Ann)
*TBA: Update web pages with any new materials from report (Ann)
*TBA: create full publications list (Katie)
*TBA: final review (Tina, Ron)
*TBA: final pdf created and submitted to Rachana (Katie)
==New Reporting Metrics for the Annual Progress Report==

*[[Media:Faculty_Information_Fields.v3.docx| Template for Reporting Faculty Metrics]]
*[[Media:NA-MIC_Personnel_Roster.xls | NA-MIC Personnel Roster]]

==Other Reporting Requirements==

*[[Media:1A_Center_Summary_Table.docx | Center Summary Table]]

==Scientific Progress Report==
*[[Media:Progress_Report_Template_National_Centers_for_Biomedical_Computing_2.1.docx | New Progress Report Template]]
*[[Media:NA-MIC_IMPACT_STATEMENT.pdf | NA-MIC IMPACT STATEMENT 2012]]
*[[Wiki_page_for_2013_Progress_Report_Assignments]]‎
*[[Wiki_page_for_2013_Preliminary_Draft]]

2013 Progress Report

2013-01-31T21:13:27Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/7/2013: LOI goes to subs (Rachana)
*4/4/2013: Signed Subcontractor's Documents due back to BWH
*4/8/2013: Review by Radiology Administration (Trey/Jean)
*4/12/2013: Review by BWH RA
*4/29/2013: Signed Facepage and budget docs due back to Katie M for page numbering (Katie)
*4/30/2013: Ship it to NIH

==Scientific Report Timeline==
*10/13/2012: wiki page setup for progress report (Ann)
*TBA: all sections to be completed by owners
*TBA: check NIH compliance of all publications in Pubmed (Katie)
*TBA: create final report (Ann)
*TBA: Update web pages with any new materials from report (Ann)
*TBA: create full publications list (Katie)
*TBA: final review (Tina, Ron)
*TBA: final pdf created and submitted to Rachana (Katie)
==New Reporting Metrics for the Annual Progress Report==

*[[Media:Faculty_Information_Fields.v3.docx| Template for Reporting Faculty Metrics]]
*[[Media:NA-MIC_Personnel_Roster.xls | NA-MIC Personnel Roster]]

==Other Reporting Requirements==

*[[Media:1A_Center_Summary_Table.docx | Center Summary Table]]

==Scientific Progress Report==
*[[Media:Progress_Report_Template_National_Centers_for_Biomedical_Computing_2.1.docx | New Progress Report Template]]
*[[Media:NA-MIC_IMPACT_STATEMENT.pdf | NA-MIC IMPACT STATEMENT 2012]]
*[[Wiki_page_for_2013_Progress_Report_Assignments]]‎
*[[Wiki_page_for_2013_Preliminary_Draft]]

2012 Progress Report

2012-03-12T19:50:13Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/14: LOI goes to subs (Sanjay/Rachana)
*4/06: Signed Subcontractor's Documents due back to BWH
*4/09: Review by Radiology Administration (Trey/Susan)
*4/13: Review by BWH RA
*4/27: Signed Facepage and budget docs due back to Katie M for page numbering (Katie)
*4/30: Ship it to NIH

==Scientific Report Timeline==
*4/1: wiki page setup for progress report (Tina)
*4/16: all sections to be completed by owners
*4/16: check NIH compliance of all publications in Pubmed (Katie)
*4/20: create final report (Ann)
*4/23: Update web pages with any new materials from report (Ann)
*4/20: create full publications list (Katie)
*4/22: final review (Tina, Ron)
*4/23: final pdf created and submitted to Rachana (Katie)

==Scientific Progress Report==

*[[media:NA-MIC_APR_no_budget_04.29.11.pdf | 2011 Scientific Progress Report]]

2012 Progress Report

2012-03-12T19:49:17Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/14: LOI goes to subs (Sanjay/Rachana)
*4/06: Signed Subcontractor's Documents due back to BWH
*4/09: Review by Radiology Administration (Trey/Susan)
*4/13: Review by BWH RA
*4/27: Signed Docs due back to Katie M for page numbering (Katie)
*4/30: Ship it to NIH

==Scientific Report Timeline==
*4/1: wiki page setup for progress report (Tina)
*4/16: all sections to be completed by owners
*4/16: check NIH compliance of all publications in Pubmed (Katie)
*4/20: create final report (Ann)
*4/23: Update web pages with any new materials from report (Ann)
*4/20: create full publications list (Katie)
*4/22: final review (Tina, Ron)
*4/23: final pdf created and submitted to Rachana (Katie)

==Scientific Progress Report==

*[[media:NA-MIC_APR_no_budget_04.29.11.pdf | 2011 Scientific Progress Report]]

2011 Progress Report

2011-02-28T18:32:03Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/03: LOI goes to subs (Sanjay/Rachana)
*3/31: Signed Subcontractor's Documents due back to BWH
*4/05: Review by Radiology Administration (Trey/Susan)
*4/14: Review by BWH RA
*4/28: Signed Docs due back to Katie M for page numbering (Katie)
*4/29: Ship it to NIH

==Scientific Report Timeline==
*3/1: wiki page setup for progress report
*4/16: all sections to be completed by owners
*4/16: check NIH compliance of all publications in Pubmed (Katie)
*4/20: create final report (Ann)
*4/20: create full publications list (Katie)
*4/16: final review (Tina, Ron)
*4/23: final pdf created and submitted to Rachana (Katie)

=Report Outline=

==OVERVIEW==

==ROADMAP PROJECTS==

===Atrial Fibrillation, Rob MacLeod===

===Huntington's Disease, Hans Johnson===

===Head and Neck Cancer, Greg Sharp===

===Traumatic Brain Injury, Jack Van Horn===

===??Image Guided Therapy, Nobuhiko Hata===

==COMPUTER SCIENCE CORE==

===Algorithms===

*Overview, Ross Whitaker

*Statistical Models of Anatomy and Pathology, Polina Golland

*Geometric Correspondence, Guido Gerig

*User Interactive Tools for Segmentation, Allen Tannenbaum

*Longitudinal and Time Series Analysis, Martin Styner

===Engineering===

*Overview, Will Schroeder

*Architecture, Will Schroeder

*End User Platform Slicer 4, Steve Pieper

*Computational Platform, CLI, Jim Miller

*Data Management Platform, Steven Aylward

*Software Process, Steven Alyward

==OUTREACH==

*Service, Will Schroeder

*Training, Randy Gollub

*Dissemination, Tina Kapur and Steve Pieper

==ARRA SUPPLEMENTS==

==EAB REPORT==

2011 Progress Report

2011-02-03T15:12:40Z

Rachana: /* Scientific Report Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/01: LOI goes to subs (Sanjay/Rachana)
*3/29: Signed Subcontractor's Documents due back to BWH
*4/05: Review by Radiology Administration (Trey/Susan)
*4/14: Review by BWH RA
*4/28: Signed Docs due back to Katie M for page numbering (Katie)
*4/29: Ship it to NIH

==Scientific Report Timeline==
*3/1: wiki page setup for progress report
*4/2: all sections to be completed by owners
*4/9: create final report (Ann)
*4/16: final review (Tina, Ron)
*4/23: final pdf created and submitted to Rachana (Katie)

2011 Progress Report

2011-02-03T15:11:47Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

==Administrative Paperwork Timeline==

*3/01: LOI goes to subs (Sanjay/Rachana)
*3/29: Signed Subcontractor's Documents due back to BWH
*4/05: Review by Radiology Administration (Trey/Susan)
*4/14: Review by BWH RA
*4/28: Signed Docs due back to Katie M for page numbering (Katie)
*4/29: Ship it to NIH

==Scientific Report Timeline==
*4/1: wiki page setup for progress report
*5/2: all sections to be completed by owners
*5/9: create final report (Ann)
*5/16: final review (Tina, Ron)
*5/23: final pdf created and submitted to Rachana (Katie)

Projects:ARRA:SlicerWF

2009-10-10T13:37:28Z

Rachana:

[[Projects:ARRASuplements|Back to Slicer ARRA home page]]
= Aim =
Supplement 3D Slicer and Extensible Neuroimaging Archive Toolkit (XNAT) with workflow management system. Provide integration and interoperability between 3D Slicer, XNAT Services and 3-rd party image processing applications and high performance computing systems. Implement it as within currently developed Structural Planning and Implementation in Neurological Exploration (SPINE) System.

= SPINE Project Documentation =
[http://cni.bwh.harvard.edu/projects/spine/index.html SPINE Docs]

= Research Plan =
*Create a stand-alone SPINE desktop agent with fully functional data exchange and communication mechanisms towards 3D Slicer and XNAT.
*Develop Service Oriented Architecture (SOA) SPINE System that will include 3D Slicer image processing modules deployed as web services as well as a workflow management system to orchestrate interaction between 3D Slicer, XNAT, and 3-rd party tools.
*Implement two-way control and communications between 3D Slicer and SPINE modules.
*Adapt SPINE System for cluster and grid computing scenarios.
*Provide with workflow and 3D Slicer web service wrappers editing tools.
=Key Personnel=
* Charles Gutmann, MD., 4%, 9-17-2009 through 9-16-2011
* Alexander Zaitsev, Ph.D., 75%, 9-17-2009 through 9-16-2011

=Progress=

* October 1 - 7, 2009
- Selected two first priority Projects: EM Segmentation of brain MRI images; Lung CT Scans Processing

- Got initial outline of user requirements and design specs

Projects:ARRA:SlicerWF

2009-10-09T14:51:10Z

Rachana:

[[Projects:ARRASuplements|Back to Slicer ARRA home page]]
= Aim =
Supplement 3D Slicer and Extensible Neuroimaging Archive Toolkit (XNAT) with workflow management system. Provide integration and interoperability between 3D Slicer, XNAT Services and 3-rd party image processing applications and high performance computing systems. Implement it as within currently developed Structural Planning and Implementation in Neurological Exploration (SPINE) System.

= SPINE Project Documentation =
[http://cni.bwh.harvard.edu/projects/spine/index.html SPINE Docs]

= Research Plan =
*Create a stand-alone SPINE desktop agent with fully functional data exchange and communication mechanisms towards 3D Slicer and XNAT.
*Develop Service Oriented Architecture (SOA) SPINE System that will include 3D Slicer image processing modules deployed as web services as well as a workflow management system to orchestrate interaction between 3D Slicer, XNAT, and 3-rd party tools.
*Implement two-way control and communications between 3D Slicer and SPINE modules.
*Adapt SPINE System for cluster and grid computing scenarios.
*Provide with workflow and 3D Slicer web service wrappers editing tools.
=Key Personnel=
* Charles Gutmann, Ph.D., 4%, 9-17-2009 through 9-16-2011
* Alexander Zaitsev, Ph.D., 75%, 9-17-2009 through 9-16-2011

=Progress=

* October 1 - 7, 2009
- Selected two first priority Projects: EM Segmentation of brain MRI images; Lung CT Scans Processing

- Got initial outline of user requirements and design specs

Projects:ARRA:SlicerUI

2009-10-09T14:49:58Z

Rachana:

[[Projects:ARRASuplements|Back to Slicer ARRA home page]]
= Aim =
The effective visualization, data processing, analysis and interaction of medical images and ancillary data is a complex process requiring sophisticated and efficient software tools. Further, the development of new tools requires a productive and widely supported software environment. In such an environment, the human-computer interface plays a critical role in the overall effectiveness of the software tools. To this end, the Slicer graphical user interface (GUI) is to be significantly enhanced by the adoption of the standard and widely used Qt GUI toolkit. Qt has recently changed its licensing terms, meaning that it is now compatible with Slicer's commitment to open systems. Further, Qt is now recognized as the defacto standard, cross-platform GUI toolkit, offering superior performance, capability and productivity.

= Research Plan =
Slicer currently has an extensive GUI that consists of three major, logical parts: 1) the core, 2) command-line modules, and 3) modules. The research plan recognizes this organization, and will address the GUI development accordingly.
* The first step is to replace the core GUI with Qt. This will demand some initial design and planning, including integration of various Qt tools such as Qt Designer.
* Second, the command-line modules automatically generate their GUI from an XML description of the module. This will require modification so that Qt GUIs are generated (instead of the current KWWidgets).
* Finally, select, critical modules such as EM Segmenter will be reworked to use Qt widgets.
*Most of this work will occur in the first year, with completion of the critical modules expected early in the first quarter of the second year.
*After this, the research plan switches to training and dissemination of Qt-related technology so that the broader Slicer community can participate in the transition of modules to the Qt GUI.
*The key to this plan is to switch the core and command-line modules as fast as possible since we want to minimize disruption to the Slicer community, and to support continued Slicer development.
=Key Personnel=
* William Schroeder, Ph.D., 8%, 9/17/2009 - 9/16/2011

=Progress=
(most recent on top)
* Follow up phone call October 2, 2009
* [[Events:CTK-Workshop-September-2009 | One day meeting with CTK community September 25, 2009]]
* Follow up tcon Tuesday September 22, 2009 (JC, Will, Sebastien, Steve)
* [[Sept-2009-SlicerWidgetsBrainstorm | Two-day planning meeting September 16-17, 2009]]

Projects:ARRA:SlicerWF

2009-10-09T14:38:33Z

Rachana:

[[Projects:ARRASuplements|Back to Slicer ARRA home page]]
= Aim =
Supplement 3D Slicer and Extensible Neuroimaging Archive Toolkit (XNAT) with workflow management system. Provide integration and interoperability between 3D Slicer, XNAT Services and 3-rd party image processing applications and high performance computing systems. Implement it as within currently developed Structural Planning and Implementation in Neurological Exploration (SPINE) System.

= SPINE Project Documentation =
[http://cni.bwh.harvard.edu/projects/spine/index.html SPINE Docs]

= Research Plan =
*Create a stand-alone SPINE desktop agent with fully functional data exchange and communication mechanisms towards 3D Slicer and XNAT.
*Develop Service Oriented Architecture (SOA) SPINE System that will include 3D Slicer image processing modules deployed as web services as well as a workflow management system to orchestrate interaction between 3D Slicer, XNAT, and 3-rd party tools.
*Implement two-way control and communications between 3D Slicer and SPINE modules.
*Adapt SPINE System for cluster and grid computing scenarios.
*Provide with workflow and 3D Slicer web service wrappers editing tools.
=Key Personnel=
* Charles Gutmann, Ph.D., 4%, 9-17-2009 through 9-16-2011
* Alexander Zaitsev, 75%, 9-17-2009 through 9-16-2011

=Progress=

* October 1 - 7, 2009
- Selected two first priority Projects: EM Segmentation of brain MRI images; Lung CT Scans Processing

- Got initial outline of user requirements and design specs

Projects:ARRA:SlicerReg

2009-10-09T01:30:45Z

Rachana:

[[Projects:ARRASuplements|Back to Slicer ARRA home page]]
== Aim ==
3D Slicer provides access to powerful registration tools. Based on our experience with clinician scientist through the Harvard Catalyst, the current interface and documentation are not suitable for that audience. We propose to address this critical shortcoming through a number of measures listed below. If successful, this will open access to powerful technologies for data fusion and analysis of progression of disease to a new class of clinical users.

== Research Plan ==
The registration modules in 3Dslicer are built in ITK and are controlled by complex sets of command-line parameters that are not easily accessible to non-experts. How the parameters interact and how they should be adjusted based on image characteristics, such as tissue contrast, field of view, voxel anisotropy, initial misalignment, differential bias etc. are poorly explored and not documented. To make the tool-set accessible to the clinical end-user we propose to support/enhance the existing tool with:
*introductory documentation to the principles and pitfalls of 3D registration, global guidelines for the choice of registration method and parameters.
*tutorials for image registration (rigid, affine, non-rigid)
*explain strategies to choose and vary parameters (DOF, cost function, search range, masking, choice of reference scan, scale space approaches)
*explain methods to measure and visualize registration quality/success
*develop parameter space exploration methods/tools
*build and publish a library of use-case scenarios (same subject & contrast, different contrast, different subject, different modality)
=Key Personnel=
* Dominik Meier, Ph.D., 81%, 9-17-2009 through 9-16-2011

=Progress=
(most recent on top)
* 2009/10/05 : Prepared use-case hierarchy structure used to catalog the collection of registration example scenarios. Collect first inventory of datasets used thus far for training & testing. Collect links to further datasets. Set up the [[Projects:RegistrationDocumentation|Documentation Wiki]]. Provided direct user assistance (DTI to baseline).
*ongoing efforts are documented here : [[Projects:RegistrationDocumentation]]

2009 Progress Report

2009-04-06T14:13:39Z

Rachana:

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

* [[2009_Annual_Scientific_Report|2009 Annual Scientific Report in Wiki Pages]]
* [[media:NA-MIC_2009_Scientific_Report_final.pdf|2009 Annual Scientific Report PDF]]

==Administrative Paperwork Timeline==

*3/30/09: LOI goes to subs (Sanjay/Rachana)
*4/29/09: Subcontractor's Documents due back to BWH
*5/01/09: Review by Radiology Administration (Trey/Susan)
*5/11/09: Review by BWH RA
*5/28/09: Signed Docs due back to Katie M for page numbering (Katie)
*5/29/09: Ship it to NIH

==Scientific Report Timeline==
*4/1/09: wiki page setup for progress report
*5/15/09: all sections to be completed by owners (in contrast to conferences, there will be NO extensions)
*5/17/09: final review completed (Ron/Tina)
*5/19/09: final pdf created (Katie)
*5/21/09: final pdf reviewed and submitted to Rachana (Tina)

2009 Progress Report

2009-04-06T14:12:01Z

Rachana:

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

* [[2009_Annual_Scientific_Report|2009 Annual Scientific Report in Wiki Pages]]
* [[media:NA-MIC_2009_Scientific_Report_final.pdf|2009 Annual Scientific Report PDF]]
* [[NAMIC Y06 Statement of Work]]

==Administrative Paperwork Timeline==

*3/30/09: LOI goes to subs (Sanjay/Rachana)
*4/29/09: Subcontractor's Documents due back to BWH
*5/01/09: Review by Radiology Administration (Trey/Susan)
*5/11/09: Review by BWH RA
*5/28/09: Signed Docs due back to Katie M for page numbering (Katie)
*5/29/09: Ship it to NIH

==Scientific Report Timeline==
*4/1/09: wiki page setup for progress report
*5/15/09: all sections to be completed by owners (in contrast to conferences, there will be NO extensions)
*5/17/09: final review completed (Ron/Tina)
*5/19/09: final pdf created (Katie)
*5/21/09: final pdf reviewed and submitted to Rachana (Tina)

2009 Progress Report

2009-04-06T14:09:23Z

Rachana:

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

* [[2009_Annual_Scientific_Report|2009 Annual Scientific Report in Wiki Pages]]
* [[media:NA-MIC_2009_Scientific_Report_final.pdf|2009 Annual Scientific Report PDF]]

==Administrative Paperwork Timeline==

*3/30/09: LOI goes to subs (Sanjay/Rachana)
*4/29/09: Subcontractor's Documents due back to BWH
*5/01/09: Review by Radiology Administration (Trey/Susan)
*5/11/09: Review by BWH RA
*5/28/09: Signed Docs due back to Katie M for page numbering (Katie)
*5/29/09: Ship it to NIH

==Statement of Work==

==Scientific Report Timeline==
*4/1/09: wiki page setup for progress report
*5/15/09: all sections to be completed by owners (in contrast to conferences, there will be NO extensions)
*5/17/09: final review completed (Ron/Tina)
*5/19/09: final pdf created (Katie)
*5/21/09: final pdf reviewed and submitted to Rachana (Tina)

2009 Progress Report

2009-04-06T14:08:00Z

Rachana: /* Administrative Paperwork Timeline */

2009 Progress Report

2009-02-27T13:59:54Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

* [[2009_Annual_Scientific_Report|2009 Annual Scientific Report in Wiki Pages]]
* [[media:NA-MIC_2009_Scientific_Report_final.pdf|2009 Annual Scientific Report PDF]]

==Administrative Paperwork Timeline==

*3/30/09: LOI goes to subs (Sanjay/Rachana)
*4/27/09: Subcontractor's Documents due back to BWH
*5/01/09: Review by Radiology Administration (Trey/Susan)
*5/11/09: Review by BWH RA
*5/28/09: Signed Docs due back to Katie M for page numbering (Katie)
*5/29/09: Ship it to NIH

==Scientific Report Timeline==
*4/1/09: wiki page setup for progress report
*5/15/09: all sections to be completed by owners (in contrast to conferences, there will be NO extensions)
*5/17/09: final review completed (Ron/Tina)
*5/19/09: final pdf created (Katie)
*5/21/09: final pdf reviewed and submitted to Rachana (Tina)

2008 Progress Report

2008-03-21T03:38:53Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

* [[2008_Annual_Scientific_Report|2008 Annual Scientific Report in Wiki Pages]]

==Administrative Paperwork Timeline==

*3/21/08: LOI goes to subs (Sanjay/Rachana)
*4/15/08: Subcontractor's Documents due back to BWH
*4/21/08: Review by Radiology Administration (Trey/Susan)
*5/15/08: Administrative review by BWH (Angela Kazanovicz)
*5/29/08: Docs due back to Katie for page numbering (Katie)
*5/30/08: Ship it to NIH (May 31 is Saturday)

==Scientific Report Timeline==
*4/1/08: wiki page setup for progress report
*5/15/08: all sections to be completed by owners
*5/15/08: final scientific report submitted to Rachana
*5/22/08: final review completed (Ron/Tina)

2008 Progress Report

2008-03-21T03:37:00Z

Rachana: /* Administrative Paperwork Timeline */

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

* [[2008_Annual_Scientific_Report|2008 Annual Scientific Report in Wiki Pages]]

==Administrative Paperwork Timeline==

*3/21/08: LOI goes to subs (Sanjay/Rachana)
*4/15/08: Subcontractor's Documents due back to BWH
*5/1/08: Review by Radiology Administration (Trey/Susan)
*5/15/08: Administrative review by BWH (Angela Kazanovicz)
*5/29/08: Docs due back to Katie for page numbering (Katie)
*5/30/08: Ship it to NIH (May 31 is Saturday)

==Scientific Report Timeline==
*4/1/08: wiki page setup for progress report
*5/15/08: all sections to be completed by owners
*5/15/08: final scientific report submitted to Rachana
*5/22/08: final review completed (Ron/Tina)

NAC/Annual Reports

2008-02-26T14:37:59Z

Rachana:

NAC Annual Reports:

== 2006 ==

* [[2006_NAC_Annual_Report|2006 NAC Annual Report]]

2008 NAC Annual Report

2008-02-26T14:35:46Z

Rachana: Removing all content from page

2008 NAC Annual Report

2008-02-26T14:27:21Z

Rachana:

Back to [[NAC_Annual_Reports|NAC_Annual_Reports]]

= The Timeline =

* 4/1/08: LOI goes to subs (Sanjay/Rachana)
* 4/18/08: Subcontractor's Documents due back to BWH (Sanjay/Rachana)
* 5/1/08: Review by Radiology Administration (Trey/Susan)
* 5/15/08: Administrative review by BWH (Angela Kazanovicz)
* 5/29/08: Docs due back to Katie for page numbering (Katie)
* 5/30/08: Ship it to NIH (May 31 is Saturday)

2008 NAC Annual Report

2008-02-26T14:22:06Z

Rachana: New page: = The Timeline = * 4/1/08: LOI goes to subs (Sanjay/Rachana) * 4/18/08: Subcontractor's Documents due back to BWH (Sanjay/Rachana) * 5/1/08: Review by Radiology Administration (Trey/...

= The Timeline =

* 4/1/08: LOI goes to subs (Sanjay/Rachana)
* 4/18/08: Subcontractor's Documents due back to BWH (Sanjay/Rachana)
* 5/1/08: Review by Radiology Administration (Trey/Susan)
* 5/15/08: Administrative review by BWH (Angela Kazanovicz)
* 5/29/08: Docs due back to Katie for page numbering (Katie)
* 5/30/08: Ship it to NIH (May 31 is Saturday)

NAC/Annual Reports

2008-02-26T14:20:12Z

Rachana: /* 2006 */

NAC Annual Reports:

== 2008 ==

* [[2008_NAC_Annual_Report|2008 NAC Annual Report]]

== 2006 ==

* [[2006_NAC_Annual_Report|2006 NAC Annual Report]]

2008 Progress Report

2008-01-31T03:13:21Z

Rachana:

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

= The Timeline =

*4/1/08: LOI goes to subs (Sanjay/Rachana)
*4/18/08: Subcontractor's Documents due back to BWH
*5/1/08: Review by Radiology Administration (Trey/Susan)
*5/15/08: Administrative review by BWH (Angela Kazanovicz)
*5/29/08: Docs due back to Katie for page numbering (Katie)
*5/30/08: Ship it to NIH (May 31 is Saturday)

2008 Progress Report

2008-01-31T03:11:28Z

Rachana:

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

= The Timeline =

NAMIC Progress Report is due to NIH on 6/1/08

*4/1/08: LOI goes to subs (Sanjay/Rachana)
*4/18/08: Subcontractor's Documents due back to BWH
*5/1/08: Review by Radiology Administration (Trey/Susan)
*5/15/08: Administrative review by BWH (Angela Kazanovicz)
*5/29/08: Docs due back to Katie for page numbering (Katie)
*5/30/08: Ship it to NIH (May 31 is Saturday)

2008 Progress Report

2008-01-31T03:09:07Z

Rachana:

Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]

= The Timeline =

NAMIC Progress Report is due to NIH on 6/1/08

*4/1/08: LOI goes to subs (Sanjay/Rachana)
*4/18/08: Subs Docs due back to BWH
*5/1/08: Review by Radiology Administration (Trey/Susan)
*5/15/08: Administrative review by BWH (Angela Kazanovicz)
*5/29/08: Docs due back to Katie for page numbering (Katie)
*5/30/08: Ship it to NIH (May 31 is Saturday)

2008 Progress Report

2008-01-31T03:01:13Z

Rachana:

Progress Report due to NIH - Jun 1, 2008

*4/1/08: LOI goes to subs (Sanjay/Rachana)
*4/18/08: Subs Docs due back to BWH
*5/1/08: Review by Radiology Administration (Trey/Susan)
*5/15/08: Administrative review by BWH (Angela Kazanovicz)
*5/29/08: Docs due back to Katie for page numbering (Katie)
*5/30/08: Ship it to NIH (May 31 is Saturday)

NAMIC Annual Reports

2008-01-31T02:59:59Z

Rachana:

== Introduction to NAMIC Progress Reports ==

This page documents all Progress Reports prepared for NA-MIC. This includes the annual progress reports as well as intermediate reports and milestones submitted in response to requests by NIH.

== [[2008_Progress_Report|2008 Progress Report]] ==

== [[2007_Progress_Report|2007 Progress Report]] ==
This is the 2007 Progress Report and all related materials.

== [[2006_Progress_Report|2006 Progress Report]] ==

This is the 2006 Progress Report and all related materials as well as followup questions and answers.

== [[2005_Progress_Report|2005 Progress Report]] ==

2008 Progress Report

2008-01-31T02:57:23Z

Rachana: New page: Progress Report due to NIH - Jun 1, 2008 4/1/08: LOI goes to subs (Sanjay/Rachana) 4/18/08: Subs Docs due back to BWH 5/1/08: Review by Radiology Administration (Trey/Susan) 5/15/08: Admi...

Progress Report due to NIH - Jun 1, 2008

4/1/08: LOI goes to subs (Sanjay/Rachana)
4/18/08: Subs Docs due back to BWH
5/1/08: Review by Radiology Administration (Trey/Susan)
5/15/08: Administrative review by BWH (Angela Kazanovicz)
5/29/08: Docs due back to Katie for page numbering (Katie)
5/30/08: Ship it to NIH (May 31 is Saturday)

2007 Annual Admin Report

2007-04-11T17:08:09Z

Rachana:

Back to [[2007_Progress_Report]]

Timeline:

*Mar 26 Send LoI to the Subs- Done
*Apr 20 Deadline for the subs to send all the docs back
*Apr 23 Review the docs with Trey and Susan
*May 1 Send it to Research Admin
*May 21 Due back to Katie for page numbering
*May 31 Ship it to NIH

2007 Annual Admin Report

2007-03-29T14:29:04Z

Rachana:

Back to [[2007_Progress_Report]]

Timeline:

*Mar 26 Send LoI to the Subs (DELAYED--waiting to hear back from NIBIB on the 2.9% cut issue)
*Apr 20 Deadline for the subs to send all the docs back
*Apr 23 Review the docs with Trey and Susan
*May 1 Send it to Research Admin
*May 21 Due back to Katie for page numbering
*May 31 Ship it to NIH

People

2007-03-07T20:41:14Z

Rachana: /* Personnel at least partially funded by NA-MIC */

== Personnel at least partially funded by NA-MIC ==

# Core 8: Leadership
## [[User:Kikinis|Ron Kikinis]], Harvard (BWH SPL) PI
## [[User:Mastrogiacom|Katie Mastrogiacomo]], Harvard (BWH SPL)
# Core 1 (Algorithms)
## [[User:Lzollei|Lilla Zollei]], MIT
## [[Eric_Grimson|Eric Grimson]], MIT PI
## [[Polina_Golland|Polina Golland]], MIT
## Lauren O'Donnell, MIT
## Wanmei Ou, MIT
## [[Mahnaz_Maddah|Mahnaz Maddah]], MIT
## Guido Gerig, UNC PI
## [[User:Styner|Martin Styner]], UNC
## [[User:Gcasey|Casey Goodlett]], UNC
## Ipek Oguz, UNC
## Allen Tannenbaum, Georgia Tech PI
## Oleg Michailovich, Georgia Tech
## Ramsey Al-Hakim, Georgia Tech
## [[User:Melonakos|John Melonakos]], Georgia Tech
## [[User:Lankton|Shawn Lankton]], Georgia Tech
## [[User:Nain|Delphine Nain]], Georgia Tech
## Xavier Le Faucheur, Georgia Tech
## [[User:Mohan|Vandana Mohan]], Georgia Tech
## Tom Fletcher, Utah
## [[User:Whitaker]], Utah, Algorithms Core PI
## Tolga Tasdizen, Utah
## Saurav Basu, Utah
## Dave Kennedy, Harvard (MGH) PI
## Bruce Fischl, Harvard (MGH)
## [[User:DavidTuch|David Tuch]], Harvard (MGH)
## Josh Snyder, Harvard (MGH)
## [[User:dsjen|Dennis Jen]], Harvard (MGH)
# Core 2 (Engineering)
## [[User:Lorensen|Will Schroeder]], Kitware, Core PI
## [[User:Ibanez|Luis Ibanez]],Kitware
## [[User:Mathieu|Mathieu Malaterre]],Kitware
## [[User:Barre|Sebastien Barre]],Kitware
## [[User:Karthik|Karthik Krishnan]],Kitware
## Andy Cedilnik, Kitware
## [[User:Millerjv|Jim Miller]], GE PI
## [[User:Taox|Xiaodong Tao]], GE
## Dan Blezek, GE
## [[User:Pieper|Steve Pieper]], Isomics PI
## Alex Yarmakovich, Isomics
## Art Toga, UCLA PI
## [[User:Dinov|Dinov]], UCLA
## [[User:MichaelPan|Michael Pan]], UCLA
## [[User:Jags|Jagadeeswaran Rajendiran]], UCLA
## Mark Ellisman, UCSD PI
## Jeff Grethe, UCSD
## Brendan Flaherty, UCSD
# Core 3: DBP
## [[User:Adamc|Adam Cohen]] Harvard (BWH PNL)
## [[User:Markd|Mark Dreusicke]] Harvard (BWH PNL)
## Martha Shenton, Harvard (BWH PNL) PI
## Sylvain Bouix, Harvard (BWH PNL)
## Marc Neithammer, Harvard (BWH PNL)
## Andy Saykin, Dartmouth PI
## Bob Roth, Dartmouth
## Laura Flashman, Dartmouth
## Thomas McAllister, Dartmouth
## Alan Green, Dartmouth
## John West, Dartmouth
## Tara McHugh, Dartmouth
## Heather Pixley, Dartmouth
## Stephen Guerin, Dartmouth
## John MacDonald, Dartmouth
## Steve Potkin, UCI PI
## [[User:Jfallon|James Fallon]], UCI
## Jessica Turner, UCI
## Martina Panzenboeck, UCI
## David Medina, UCI
## Padhraic Smyth, UCI
## Hal Stern, UCI
## Diane Highum, UCI
## Yi Jin, UCI
## Liv Trondsen, UCI
## Fabio Macciardi, Toronto
## Jim Kennedy, Toronto
## Aristotle Voineskos, Toronto
# Core 4: Service
## [[User:Andy|Andy Cedilnik]], Kitware
## [[User:Will|Will Schroeder]], Kitware PI
# Core 5: Training
## [[User:Randy|Randy Gollub]], Harvard (MGH), PI
## Guido Gerig, UNC
## [[User:Whitaker]], Utah
## Martha Shenton, Harvard (BWH PNL) PI
## [[User:SPujol|Sonia Pujol]], Harvard (BWH SPL)
# Core 6: Dissemination
## [[User:Tkapur|Tina Kapur]], Epiphany Medical, co-PI
## [[User:Pieper|Steve Pieper]], Isomics, co-PI
# Core 7: Management
## [[User:Sanjay|Sanjay Manandhar]], Harvard (BWH SPL)
## [[User:Rachana|Rachana Manandhar]], Harvard (BWH SPL)

<br />

== NA-MIC alumni ==

== "Friends and Family" ==

=== NIH ===

* [[User:Lysterp|Peter M. Lyster]]

=== mBIRN ===

* [[User:Akolasny|Anthony Kolasny]]
* [[User:Dmarcus|Dan Marcus]]
* [[User:Kikinis|Ron Kikinis]]

=== fBIRN ===

* [[User:Kikinis|Ron Kikinis]]

=== IGT ===

* [[User:Ibanez|Luis Ibanez]]

=== other ===

People

2007-02-01T21:38:12Z

Rachana: /* Personnel at least partially funded by NA-MIC */

== Personnel at least partially funded by NA-MIC ==

# Core 7: Leadership
## [[User:Kikinis|Ron Kikinis]], Harvard (BWH SPL) PI
## [[User:Mastrogiacom|Katie Mastrogiacomo]], Harvard (BWH SPL)
# Core 1 (Algorithms)
## [[User:Lzollei|Lilla Zollei]], MIT
## [[Eric_Grimson|Eric Grimson]], MIT PI
## [[Polina_Golland|Polina Golland]], MIT
## Lauren O'Donnell, MIT
## Wanmei Ou, MIT
## [[Mahnaz_Maddah|Mahnaz Maddah]], MIT
## Guido Gerig, UNC PI
## [[User:Styner|Martin Styner]], UNC
## [[User:Gcasey|Casey Goodlett]], UNC
## Ipek Oguz, UNC
## Allen Tannenbaum, Georgia Tech PI
## Oleg Michailovich, Georgia Tech
## Ramsey Al-Hakim, Georgia Tech
## [[User:Melonakos|John Melonakos]], Georgia Tech
## [[User:Lankton|Shawn Lankton]], Georgia Tech
## [[User:Nain|Delphine Nain]], Georgia Tech
## Xavier Le Faucheur, Georgia Tech
## [[User:Mohan|Vandana Mohan]], Georgia Tech
## Tom Fletcher, Utah
## [[User:Whitaker]], Utah, Algorithms Core PI
## Tolga Tasdizen, Utah
## Saurav Basu, Utah
## Dave Kennedy, Harvard (MGH) PI
## Bruce Fischl, Harvard (MGH)
## [[User:DavidTuch|David Tuch]], Harvard (MGH)
## Josh Snyder, Harvard (MGH)
## [[User:dsjen|Dennis Jen]], Harvard (MGH)
# Core 2 (Engineering)
## [[User:Lorensen|Bill Lorensen]], Core PI
## [[User:Millerjv|Jim Miller]], GE PI
## [[User:Taox|Xiaodong Tao]], GE
## Dan Blezek, GE
## [[User:Will|Will Schroeder]], Kitware PI
## [[User:Ibanez|Luis Ibanez]],Kitware
## [[User:Mathieu|Mathieu Malaterre]],Kitware
## [[User:Barre|Sebastien Barre]],Kitware
## [[User:Karthik|Karthik Krishnan]],Kitware
## Andy Cedilnik, Kitware
## [[User:Pieper|Steve Pieper]], Isomics PI
## Alex Yarmakovich, Isomics
## Art Toga, UCLA PI
## [[User:Dinov|Dinov]], UCLA
## [[User:MichaelPan|Michael Pan]], UCLA
## [[User:Jags|Jagadeeswaran Rajendiran]], UCLA
## Mark Ellisman, UCSD PI
## Jeff Grethe, UCSD
## Brendan Flaherty, UCSD
# Core 3: DBP
## [[User:Adamc|Adam Cohen]] Harvard (BWH PNL)
## [[User:Markd|Mark Dreusicke]] Harvard (BWH PNL)
## Martha Shenton, Harvard (BWH PNL) PI
## Sylvain Bouix, Harvard (BWH PNL)
## Marc Neithammer, Harvard (BWH PNL)
## Andy Saykin, Dartmouth PI
## Bob Roth, Dartmouth
## Laura Flashman, Dartmouth
## Thomas McAllister, Dartmouth
## Alan Green, Dartmouth
## John West, Dartmouth
## Tara McHugh, Dartmouth
## Heather Pixley, Dartmouth
## Stephen Guerin, Dartmouth
## John MacDonald, Dartmouth
## Steve Potkin, UCI PI
## [[User:Jfallon|James Fallon]], UCI
## Jessica Turner, UCI
## Martina Panzenboeck, UCI
## David Medina, UCI
## Padhraic Smyth, UCI
## Hal Stern, UCI
## Diane Highum, UCI
## Yi Jin, UCI
## Liv Trondsen, UCI
## Fabio Macciardi, Toronto
## Jim Kennedy, Toronto
## Aristotle Voineskos, Toronto
# Core 4: Service
## [[User:Andy|Andy Cedilnik]], Kitware
## [[User:Will|Will Schroeder]], Kitware PI
# Core 5: Training
## [[User:Randy|Randy Gollub]], Harvard (MGH), PI
## Guido Gerig, UNC
## [[User:Whitaker]], Utah
## Martha Shenton, Harvard (BWH PNL) PI
## [[User:SPujol|Sonia Pujol]], Harvard (BWH SPL)
# Core 6: Dissemination
## [[User:Tkapur|Tina Kapur]], Epiphany Medical, co-PI
## [[User:Pieper|Steve Pieper]], Isomics, co-PI
# Core 7: Management
## [[User:Sanjay|Sanjay Manandhar]], Harvard (BWH SPL)
## [[User:Rachana|Rachana Manandhar]], Harvard (BWH SPL)

<br />

== NA-MIC alumni ==

== "Friends and Family" ==

=== NIH ===

* [[User:Lysterp|Peter M. Lyster]]

=== mBIRN ===

* [[User:Akolasny|Anthony Kolasny]]
* [[User:Dmarcus|Dan Marcus]]
* [[User:Kikinis|Ron Kikinis]]

=== fBIRN ===

* [[User:Kikinis|Ron Kikinis]]

=== IGT ===

* [[User:Ibanez|Luis Ibanez]]

=== other ===

People

2007-01-30T14:23:18Z

Rachana: /* Personnel at least partially funded by NA-MIC */

== Personnel at least partially funded by NA-MIC ==

# Core 7: Leadership
## [[User:Kikinis|Ron Kikinis]], Harvard (BWH SPL) PI
## [[User:Mastrogiacom|Katie Mastrogiacomo]], Harvard (BWH SPL)
# Core 1 (Algorithms)
## [[User:Lzollei|Lilla Zollei]], MIT
## [[Eric_Grimson|Eric Grimson]], MIT PI
## [[Polina_Golland|Polina Golland]], MIT
## Lauren O'Donnell, MIT
## Wanmei Ou, MIT
## [[Mahnaz_Maddah|Mahnaz Maddah]], MIT
## Guido Gerig, UNC PI
## [[User:Styner|Martin Styner]], UNC
## [[User:Gcasey|Casey Goodlett]], UNC
## Ipek Oguz, UNC
## Allen Tannenbaum, Georgia Tech PI
## Oleg Michailovich, Georgia Tech
## Ramsey Al-Hakim, Georgia Tech
## [[User:Melonakos|John Melonakos]], Georgia Tech
## [[User:Lankton|Shawn Lankton]], Georgia Tech
## [[User:Nain|Delphine Nain]], Georgia Tech
## Xavier Le Faucheur, Georgia Tech
## [[User:Mohan|Vandana Mohan]], Georgia Tech
## Tom Fletcher, Utah
## [[User:Whitaker]], Utah, Algorithms Core PI
## Tolga Tasdizen, Utah
## Saurav Basu, Utah
## Dave Kennedy, Harvard (MGH) PI
## Bruce Fischl, Harvard (MGH)
## [[User:DavidTuch|David Tuch]], Harvard (MGH)
## Josh Snyder, Harvard (MGH)
## [[User:dsjen|Dennis Jen]], Harvard (MGH)
# Core 2 (Engineering)
## [[User:Lorensen|Bill Lorensen]], Core PI
## [[User:Millerjv|Jim Miller]], GE PI
## [[User:Taox|Xiaodong Tao]], GE
## Dan Blezek, GE
## [[User:Will|Will Schroeder]], Kitware PI
## [[User:Ibanez|Luis Ibanez]],Kitware
## [[User:Mathieu|Mathieu Malaterre]],Kitware
## [[User:Barre|Sebastien Barre]],Kitware
## [[User:Karthik|Karthik Krishnan]],Kitware
## Andy Cedilnik, Kitware
## [[User:Pieper|Steve Pieper]], Isomics PI
## Alex Yarmakovich, Isomics
## Art Toga, UCLA PI
## [[User:Dinov|Dinov]], UCLA
## [[User:MichaelPan|Michael Pan]], UCLA
## [[User:Jags|Jagadeeswaran Rajendiran]], UCLA
## Mark Ellisman, UCSD PI
## Jeff Grethe, UCSD
## Brendan Flaherty, UCSD
# Core 3: DBP
## [[User:Adamc|Adam Cohen]] Harvard (BWH PNL)
## [[User:Markd|Mark Dreusicke]] Harvard (BWH PNL)
## Martha Shenton, Harvard (BWH PNL) PI
## Sylvain Bouix, Harvard (BWH PNL)
## Marc Neithammer, Harvard (BWH PNL)
## Andy Saykin, Dartmouth PI
## Bob Roth, Dartmouth
## Laura Flashman, Dartmouth
## Thomas McAllister, Dartmouth
## Alan Green, Dartmouth
## John West, Dartmouth
## Tara McHugh, Dartmouth
## Heather Pixley, Dartmouth
## Stephen Guerin, Dartmouth
## John MacDonald, Dartmouth
## Steve Potkin, UCI PI
## [[User:Jfallon|James Fallon]], UCI
## Jessica Turner, UCI
## Martina Panzenboeck, UCI
## David Medina, UCI
## Padhraic Smyth, UCI
## Hal Stern, UCI
## Diane Highum, UCI
## Yi Jin, UCI
## Liv Trondsen, UCI
## Fabio Macciardi, Toronto
## Jim Kennedy, Toronto
## Aristotle Voineskos, Toronto
# Core 4: Service
## [[User:Andy|Andy Cedilnik]], Kitware
## [[User:Will|Will Schroeder]], Kitware PI
# Core 5: Training
## [[User:Randy|Randy Gollub]], Harvard (MGH), PI
## Guido Gerig, UNC
## [[User:Whitaker]], Utah
## Martha Shenton, Harvard (BWH PNL) PI
## [[User:SPujol|Sonia Pujol]], Harvard (BWH SPL)
# Core 6: Dissemination
## [[User:Tkapur|Tina Kapur]], Epiphany Medical, co-PI
## [[User:Pieper|Steve Pieper]], Isomics, co-PI

<br />

== NA-MIC alumni ==

== "Friends and Family" ==

=== NIH ===

* [[User:Lysterp|Peter M. Lyster]]

=== mBIRN ===

* [[User:Akolasny|Anthony Kolasny]]
* [[User:Dmarcus|Dan Marcus]]
* [[User:Kikinis|Ron Kikinis]]

=== fBIRN ===

* [[User:Kikinis|Ron Kikinis]]

=== IGT ===

* [[User:Ibanez|Luis Ibanez]]

=== other ===