NAMIC Wiki - User contributions [en]

2010 Summer Project QSpace Reconstruction for Diffusion Spectrum Imaging Data

2010-06-25T14:05:56Z

Skpathak: /* Project */

__NOTOC__
<gallery>
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:SummerProjectWeekNamic2010.png|[[Eight Major Fiber Tracks]]
Image:Cortex.png|[[Cortex Created using DSI Data]]
</gallery>

==Key Investigators==
* University Of Pittsburgh: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider
* GE: Xiaodong Tao
*BWH: Demian Wasserman

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
Code is successfully build on Slicer Framework. Luis lbanez suggested some changes to increase performance of the code.
Future direction is to add Fiber Tractography.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

2010 Summer Project QSpace Reconstruction for Diffusion Spectrum Imaging Data

2010-06-25T14:05:41Z

Skpathak: /* Project */

__NOTOC__
<gallery>
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:SummerProjectWeekNamic2010.png|[[Eight Major Fiber Tracks]]
Image:Cortex.png|[[Cortex Created using DSI Data]]
</gallery>

==Key Investigators==
* University Of Pittsburgh: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider
* GE: Xiaodong Tao
*BWH: Demian Wasserman

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
Code is successfully build in Slicer Framework. Luis lbanez suggested some changes to increase performance of the code.
Future direction is to add Fiber Tractography.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

2010 Summer Project QSpace Reconstruction for Diffusion Spectrum Imaging Data

2010-06-25T13:36:51Z

Skpathak: /* Project */

__NOTOC__
<gallery>
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:SummerProjectWeekNamic2010.png|[[Eight Major Fiber Tracks]]
Image:Cortex.png|[[Cortex Created using DSI Data]]
</gallery>

==Key Investigators==
* University Of Pittsburgh: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider
* GE: Xiaodong Tao
*BWH: Demian Wasserman

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
Code is successfully build. Luis lbanez suggested some changes to increase performance of the code.
Future direction is to add Fiber Tractography.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

2010 Summer Project QSpace Reconstruction for Diffusion Spectrum Imaging Data

2010-06-25T13:31:03Z

Skpathak: /* Project */

__NOTOC__
<gallery>
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:SummerProjectWeekNamic2010.png|[[Eight Major Fiber Tracks]]
Image:Cortex.png|[[Cortex Created using DSI Data]]
</gallery>

==Key Investigators==
* University Of Pittsburgh: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider
* GE: Xiaodong Tao
*BWH: Demian Wasserman

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
Code is successfully build. Luis lbanez suggested some changes to increseae the performance of the code.
Future direction is to add Fiber Tractography.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

2010 Summer Project QSpace Reconstruction for Diffusion Spectrum Imaging Data

2010-06-21T17:29:28Z

Skpathak:

__NOTOC__
<gallery>
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:SummerProjectWeekNamic2010.png|[[Eight Major Fiber Tracks]]
Image:Cortex.png|[[Cortex Created using DSI Data]]
</gallery>

==Key Investigators==
* University Of Pittsburgh: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider
* GE: Xiaodong Tao
*BWH: Demian Wasserman

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
We have working C++ code.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

File:Cortex.png

2010-06-21T17:26:51Z

Skpathak:

File:SummerProjectWeekNamic2010.png

2010-06-21T17:23:00Z

Skpathak:

User:Skpathak

2010-06-11T01:34:59Z

Skpathak: /* Key Investigators */

==Key Investigators==
* University Of Pittsburgh: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
We have working C++ code.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

Back to [[2010_Summer_Project_Week#Projects|Projects List]]

User:Skpathak

2010-06-11T01:23:30Z

Skpathak: /*Diffusion Spectrum Imaging Reconstruction using GQI Project */

==Key Investigators==
* Utah: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
Implement Generalized QSpace Imaging Reconstruction method which is used to analyze Diffusion Spectrum Imaging data.
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
We have working C++ code.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

Back to [[2010_Summer_Project_Week#Projects|Projects List]]

User:Skpathak

2010-06-11T01:14:29Z

Skpathak: Created page with '==Key Investigators== * Utah: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider ==Project== <div style="margin: 10px;"> <div style="width: 30%; float: left; padding-right: 2%;">…'

==Key Investigators==
* Utah: Sudhir K Pathak, Fang Cheng Yeh, Walter Schneider

==Project==
<div style="margin: 10px;">
<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Objective</h3>
1. To Implement Generalized QSpace Imaging Reconstruction method module in Slicer. 2. Reconstruction is part of HDFT Pipeline (High Definition Fiber Tractography). Other peocessing step includes Finding Local Maxima of ODF .
</div>

<div style="width: 30%; float: left; padding-right: 2%;">
<h3>Approach, Plan</h3>
We will use ITK Filter framework to create a Reconstruction Filter.
</div>

<div style="width: 35%; float: left;">
<h3>Progress</h3>
We have standalone working code written in C++.
</div>

<div style="width: 35%; float: left;">
<h3>References</h3>
1. Fang-Cheng Yeh, Van J. Wedeen, Wen-Yih Isaac Tseng. “Generalized Q-Sampling Imaging." IEEE TMI, 2010 (in print).
2. Van J. Wedeen, Patric Hagmann, Wen-Yih Isaac Tseng, Timothy G. Reese, Robert M. Weisskoff, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, MRM 2005 54:1377–1386.
</div>

Back to [[2010_Summer_Project_Week#Projects|Projects List]]