NAMIC Wiki - User contributions [en]

File:20120627181808!Gyn-needle-segmentation-1.png

2012-06-27T18:29:04Z

Stblevins:

File:Needle-TractographyFiducialSeeding2.png

2012-06-27T18:22:26Z

Stblevins: uploaded a new version of "File:Needle-TractographyFiducialSeeding2.png"

File:Needle-TractographyFiducialSeeding.png

2012-06-27T18:21:38Z

Stblevins: uploaded a new version of "File:Needle-TractographyFiducialSeeding.png"

File:Gyn-needle-segmentation-1.png

2012-06-27T18:18:09Z

Stblevins: uploaded a new version of "File:Gyn-needle-segmentation-1.png"

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T16:49:02Z

Stblevins:

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of 3D bladder rendering image with slides.
Image:Needle-TractographyFiducialSeeding.png | Screenshot of full pelvic region.
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of bladder being segmented with GrowCut algorithm.
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

Tools previously mentioned were successfully used to segment out the bladder from MRI images, and 3D images were rendered as a result. Three tutorial modules were created outlining the mechanism of execution, included in this page. Further segmentation efforts will be conducted on different data sets.

[[Media:Draw_Effect_Tool_Tutorial_for_Bladder_Segmentation.doc|Draw Tutorial]]
[[Media:Crop_Tool_and_Grow_Cut_Segmentation_Tool_Tutorial_Using_Bladder_Images.doc|Crop and GrowCut Tutorial]]
[[Media:Combined_Cropping_Growcut_and_Draw_Tool_Tutorial_for_Bladder_Imaging.doc|Combined GrowCut, Crop, and Draw Tutorial]]

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T16:27:13Z

Stblevins:

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of 3D bladder rendering image with slides.
Image:Needle-TractographyFiducialSeeding.png | Screenshot of full pelvic region.
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of bladder being segmented with GrowCut algorithm.
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

Tools previously mentioned were successfully used to segment out the bladder from MRI images, and 3D images were rendered as a result. Three tutorial modules were created outlining the mechanism of execution, included in this page. Further segmentation efforts will be conducted on different data sets.

[[Media:Draw_Effect_Tool_Tutorial_for_Bladder_Segmentation.doc|Draw Tutorial]]
[[Media:Crop_Tool_and_Grow_Cut_Segmentation_Tool_Tutorial_Using_Bladder_Images.doc|Crop and GrowCut Tutorial]]
[[Media:Combined_Cropping_Growcut_and_Draw_Tool_Tutorial_for_Bladder_Imaging.doc|Combined GrowCut, Crop, and Draw Turotial]]

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T16:23:27Z

Stblevins:

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of 3D bladder rendering image with slides.
Image:Needle-TractographyFiducialSeeding.png | Screenshot of full pelvic region.
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of bladder being segmented with GrowCut algorithm.
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

Tools previously mentioned were successfully used to segment out the bladder from MRI images, and 3D images were rendered as a result. Three tutorial modules were created outlining the mechanism of execution, included in this page. Further segmentation efforts will be conducted on different data sets.

[[Media:Draw_Effect_Tool_Tutorial_for_Bladder_Segmentation.doc|Draw Tutorial]]
[[Media:Combined_Cropping_Growcut_and_Draw_Tool_Tutorial_for_Bladder_Imaging.doc|Combined GrowCut, Crop, and Draw Turotial]]

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>

File:Combined Cropping Growcut and Draw Tool Tutorial for Bladder Imaging.doc

2012-06-25T16:20:24Z

Stblevins:

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T16:19:53Z

Stblevins:

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of 3D bladder rendering image with slides.
Image:Needle-TractographyFiducialSeeding.png | Screenshot of full pelvic region.
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of bladder being segmented with GrowCut algorithm.
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

Tools previously mentioned were successfully used to segment out the bladder from MRI images, and 3D images were rendered as a result. Three tutorial modules were created outlining the mechanism of execution, included in this page. Further segmentation efforts will be conducted on different data sets.

[[Media:Combined_Cropping_Growcut_and_Draw_Tool_Tutorial_for_Bladder_Imaging.doc|Combined GrowCut, Crop, and Draw Turotial]]

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>

File:Combined Cropping Growcut and Draw Tool Tutorial for Bladder Imaging.docx

2012-06-25T16:14:32Z

Stblevins: uploaded a new version of "File:Combined Cropping Growcut and Draw Tool Tutorial for Bladder Imaging.docx"

Slicer tutorial of how to perform bladder segmentation using Crop, GrowCut, and Draw tools.

File:Crop Tool and Grow Cut Segmentation Tool Tutorial Using Bladder Images.docx

2012-06-25T16:13:33Z

Stblevins: uploaded a new version of "File:Crop Tool and Grow Cut Segmentation Tool Tutorial Using Bladder Images.docx"

Slicer tutorial on how to perform bladder segmentation using the Crop and GrowCut tools.

File:Draw Effect Tool Tutorial for Bladder Segmentation.docx

2012-06-25T16:12:07Z

Stblevins: uploaded a new version of "File:Draw Effect Tool Tutorial for Bladder Segmentation.docx"

Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

File:Combined Cropping Growcut and Draw Tool Tutorial for Bladder Imaging.docx

2012-06-25T15:08:06Z

Stblevins: Slicer tutorial of how to perform bladder segmentation using Crop, GrowCut, and Draw tools.

Slicer tutorial of how to perform bladder segmentation using Crop, GrowCut, and Draw tools.

File:Crop Tool and Grow Cut Segmentation Tool Tutorial Using Bladder Images.docx

2012-06-25T15:04:08Z

Stblevins: Slicer tutorial on how to perform bladder segmentation using the Crop and GrowCut tools.

Slicer tutorial on how to perform bladder segmentation using the Crop and GrowCut tools.

File:Draw Effect Tool Tutorial for Bladder Segmentation.docx

2012-06-25T15:02:13Z

Stblevins: uploaded a new version of "File:Draw Effect Tool Tutorial for Bladder Segmentation.docx": Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

File:Draw Effect Tool Tutorial for Bladder Segmentation.docx

2012-06-25T14:59:40Z

Stblevins: uploaded a new version of "File:Draw Effect Tool Tutorial for Bladder Segmentation.docx": Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

File:Draw Effect Tool Tutorial for Bladder Segmentation.docx

2012-06-25T14:58:27Z

Stblevins: Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

Slicer tutorial of how to perform bladder segmentation using the Draw algorithm.

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T14:56:40Z

Stblevins:

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of 3D bladder rendering image with slides.
Image:Needle-TractographyFiducialSeeding.png | Screenshot of full pelvic region.
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of bladder being segmented with GrowCut algorithm.
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

Tools previously mentioned were successfully used to segment out the bladder from MRI images, and 3D images were rendered as a result. Three tutorial modules were created outlining the mechanism of execution, included in this page. Further segmentation efforts will be conducted on different data sets.

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>

File:Slicer 3.png

2012-06-25T14:52:56Z

Stblevins: uploaded a new version of "File:Slicer 3.png"

File:Needle-TractographyFiducialSeeding2.png

2012-06-25T14:52:16Z

Stblevins: uploaded a new version of "File:Needle-TractographyFiducialSeeding2.png"

File:Slicer 3.png

2012-06-25T14:51:31Z

Stblevins:

File:Slicer 2.png

2012-06-25T14:49:40Z

Stblevins:

File:Needle-TractographyFiducialSeeding.png

2012-06-25T14:49:13Z

Stblevins: uploaded a new version of "File:Needle-TractographyFiducialSeeding.png"

File:Gyn-needle-segmentation-1.png

2012-06-25T14:45:30Z

Stblevins: uploaded a new version of "File:Gyn-needle-segmentation-1.png"

File:Slicer 1.png

2012-06-25T14:41:53Z

Stblevins:

File:Gyn-needle-segmentation-1.png

2012-06-25T14:30:18Z

Stblevins: uploaded a new version of "File:Gyn-needle-segmentation-1.png": Reverted to version as of 14:28, 25 June 2012

File:Gyn-needle-segmentation-1.png

2012-06-25T14:30:05Z

Stblevins: uploaded a new version of "File:Gyn-needle-segmentation-1.png"

File:Gyn-needle-segmentation-1.png

2012-06-25T14:28:07Z

Stblevins: uploaded a new version of "File:Gyn-needle-segmentation-1.png"

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T14:24:42Z

Stblevins: /* Key Investigators */

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of Manual Needle Segmentation (20 minutes)
Image:Needle-TractographyFiducialSeeding.png | Screenshot of Single Needle Modeled With Tractography Fiducial Seeding Module
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of Multiple Needles Modeled With Tractography Fiducial Seeding Module (Hessian Image Visible)
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

Tools previously mentioned were successfully used to segment out the bladder from MRI images, and 3D images were rendered as a result. Three tutorial modules were created outlining the mechanism of execution, included in this page. Further segmentation efforts will be conducted on different data sets.

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>

2012 Summer Project Week:Bladder Segmentation in Slicer

2012-06-25T14:20:59Z

Stblevins:

__NOTOC__
<gallery>

Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:gyn-needle-segmentation-1.png | Screenshot of Manual Needle Segmentation (20 minutes)
Image:Needle-TractographyFiducialSeeding.png | Screenshot of Single Needle Modeled With Tractography Fiducial Seeding Module
Image:Needle-TractographyFiducialSeeding2.png | Screenshot of Multiple Needles Modeled With Tractography Fiducial Seeding Module (Hessian Image Visible)
</gallery>

==Key Investigators==
*UMass Amherst: Scott Tyler Blevins
*BWH: Scott Tyler Blevins, Nabgha Farhat, Jan Egger, Tobias Penzkofer, Tina Kapur

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to investigate efficient (less than 30s) methods for segmentation of bladder from MRI images of the female pelvis in Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

We will explore different segmentation/editing tools in Slicer to determine which ones can most efficiently segment the bladder from MRI images of the female pelvis. Tools anticipated use include Growcut, Draw, and Crop.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

N/A

==References==

</div>