NAMIC Wiki - User contributions [en]

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-08T14:49:27Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
Image:PW-MIT2016-BrainlabChestSegmentationsSlicer.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

* Importing has been updated to work with Segmentations; it is now possible to load DICOM SEG objects associated with different instances, which was/is not possible with the labelmap/editor based approach
* Exporting of Segmentations to DICOM SEG objects is now implemented.
|}

==Background and References==


[https://github.com/Sunderlandkyl/Reporting Source Code (Reporting Fork)]

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting Extension] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-08T14:18:15Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
Image:PW-MIT2016-BrainlabChestSegmentationsSlicer.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

* Importing has been updated to work with Segmentations; it is now possible to load DICOM SEG objects associated with different instances, which was/is not possible with the labelmap/editor based approach
* Exporting of Segmentations to DICOM SEG objects is now complete.
|}

==Background and References==


[https://github.com/Sunderlandkyl/Reporting Source Code (Reporting Fork)]

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting Extension] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-08T14:15:56Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
Image:PW-MIT2016-BrainlabChestSegmentationsSlicer.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

* Importing has been updated to work with Segmentations; it is now possible to load DICOM SEG objects associated with different instances, which was/is not possible with the labelmap/editor based approach
* Exporting of segmentations to DICOM SEG objects is now complete.
|}

==Background and References==


[https://github.com/Sunderlandkyl/Reporting Source Code (Reporting Fork)]

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting Extension] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-08T01:05:14Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
Image:PW-MIT2016-BrainlabChestSegmentationsSlicer.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

* Importing has been updated to work with Segmentations; it is now possible to load DICOM SEG objects associated with different instances, which was/is not possible with the labelmap/editor based approach
* Exporting of segmentations to DICOM SegObj is mostly complete, however there are still a few remaining issues.
|}

==Background and References==


[https://github.com/Sunderlandkyl/Reporting Source Code (Reporting Fork)]

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting Extension] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-06T15:41:38Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

*
|}

==Background and References==


[https://github.com/Sunderlandkyl/Reporting Source Code (Reporting Fork)]

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting Extension] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-05T17:22:27Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

*
|}

==Background and References==

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting Extension] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-05T17:21:08Z

Sunderlandkyl:

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

*
|}

==Background and References==

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting] ([https://github.com/QIICR/Reporting Github])

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-05T17:19:35Z

Sunderlandkyl: Add reference to the Reporting extension.

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

*
|}

==Background and References==

[https://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/Reporting Reporting]

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-04T16:38:03Z

Sunderlandkyl: /* Key Investigators */

__NOTOC__
<gallery>
Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]

Image:Segmentations.png
</gallery>

==Key Investigators==
* Kyle Sunderland, Queen's
* Csaba Pinter, Queen's
* Andras Lasso, Queen's
* Andrey Fedorov, BWH
* Steve Pieper, Isomics

==Project Description==
{| class="wikitable"
! style="text-align: left; width:27%" | Objective
! style="text-align: left; width:27%" | Approach and Plan
! style="text-align: left; width:27%" | Progress and Next Steps
|- style="vertical-align:top;"
|

* Implement a DICOM plugin that creates Segmentation Nodes using the DICOM SegObj import/export code.
|

* DICOM SegObj import/export is already implemented.
* The [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/Segmentations Segmentations] infrastructure will soon be integrated into Slicer core.
* Create a Python DICOM plugin to store the information from DICOM segmentations as Segmentation objects.
|

*
|}

==Background and References==

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-04T16:23:25Z

Sunderlandkyl: Add Segmentations page link.

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-04T04:22:36Z

Sunderlandkyl:

2016 Winter Project Week/Projects/DICOMSegObjIntegration

2016-01-04T04:11:47Z

Sunderlandkyl: Fill project page for DICOMSegObjIntegration