https://www.na-mic.org/w/api.php?action=feedcontributions&user=Dchamberlain&feedformat=atomNAMIC Wiki - User contributions [en]2024-03-28T12:07:07ZUser contributionsMediaWiki 1.33.0https://www.na-mic.org/w/index.php?title=SPL25&diff=90575SPL252015-11-25T00:47:43Z<p>Dchamberlain: /* Registration */</p>
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<div>{|class="wikitable"<br />
|align="left"|<big>SPL 25th Anniversary Celebration</big><br />
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April 8-9, 2016, Brigham and Women's Hospital and Harvard Medical School, Boston, MA.<br />
<br />
<br />
The Surgical Planning Laboratory of the Department of Radiology, Brigham and Women's Hospital has turned 25. We will celebrate this anniversary through an event bringing together alumni from everywhere. <br />
<br />
This is an invitation to all alumni and friends of the SPL to join the celebrations. I would love to welcome as many of you as possible at this event, to talk about times past and future.<br />
<br />
[http://www.spl.harvard.edu/pages/People/kikinis Ron Kikinis], Director, Surgical Planning Laboratory<br />
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|[[image:Circlelogo-25-1080x1120.png|250px]]<br />
|}<br />
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==Preliminary Program==<br />
<br />
Friday, April 8 5-7.30pm: Reception at [http://www.brighamandwomens.org/About_BWH/locations/main-campus-map.aspx Cabot Auditorium], Brigham and Women's Hospital, 45 Francis Street (aka 45 lobby)<br />
* 05.00-05.30 Arrival<br />
* 05.30-06.00 Welcome<br />
* 06.00-06.30 Music<br />
* 06.30-07.30 Fingerfood and drinks<br />
<br />
Saturday, April 9: 9am-12noon: Symposium at [http://www.theconfcenter.hms.harvard.edu/ Joseph P. Martin Center], Harvard Medical School<br />
* 09.00-09.15 Welcome<br />
* 09.15-10.15 Plenary talks<br />
* 10.15-11.30 Poster session and demos<br />
* 11.30-12.00 Closing remarks<br />
<br />
==Registration==<br />
<br />
http://www.eventbrite.com/e/spl-25th-anniversary-celebration-tickets-19546375736</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=2015_Summer_Project_Week&diff=902672015 Summer Project Week2015-08-05T16:01:31Z<p>Dchamberlain: </p>
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<div>__NOTOC__<br />
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[[image:PW-Summer2015.png|300px]]<br />
<br><br />
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<br />
'''Welcome to the web page for the 21st Project Week!'''<br />
<br />
The 21st PROJECT EVENT was held June 21-24, 2015 in Barcelona, Spain in conjunction with the CARS conference (http://www.cars-int.org/). It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites (Boston Children’s Hospital, Brigham and Women’s Hospital, Charité University Hospital Berlin (Germany), École de Technologie Supérieure, (Canada), École supérieure d'informatique (Belgium), Fraunhofer (Germany), Leibniz Universität Hannover (Germany), Magna Graecia University (Italy),Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), Semmelweis University (Hungary), Universidad Autonoma del Estado de Mexico, Universidad Carlos III de Madrid, University of Groningen (Netherlands), Universidad de la Republica (Uruguay), Universidad Rey Juan Carlos (Madrid), Universidad Politécnica de Madrid, University of Strasbourg (France), University of Utah, and 7 companies (Kitware, Isomics Inc,Open Connections, Galgo Medical, BK Medical ApS, ICM, Perk Lab)<br />
<br />
<br />
<br />
==Logistics==<br />
<br />
*'''Dates:''' June 21-24, 2015.<br />
*'''Location:''' [http://www.nh-collection.com/hotel/nh-collection-barcelona-constanza NH Collection Constanza Hotel, Barcelona, Spain]<br />
*'''REGISTRATION:''' Please register by adding your name to the list at the end of this page<br />
*'''Registration Fee:''' None. The organizers will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.<br />
*'''Hotel:''' You are welcome to book a room using the CARS 2015 conference services ([http://www.cars-int.org/fileadmin/templates/download/2015/CARS_2015_accomondation.pdf Click here for form])<br />
*To attend the CARS meeting, please visit [http://www.cars-int.org/ http://www.cars-int.org/]<br />
*Premium Network at Berlin Room: <br />
**username: EVENT/CARS2015<br />
**Password=CARS<br />
<br />
*Please get a badge for CARS, even if you did not register for the CARS conference. Otherwise you will not be able to come in tomorrow.<br />
<br />
==Agenda==<br />
<br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f" <br />
!style="width:10%" |Time<br />
!style="width:18%" |Sunday, June 21 <br />
!style="width:18%" |Monday, June 22 <br> Room Berlin <br />
!style="width:18%" |Tuesday, June 23 <br> Room Berlin <br />
!style="width:18%" |Wednesday, June 24 <br> Room Berlin <br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-3:00pm:'''<br />
|rowspan=3 valign=bottom|<hr>'''6pm''' Meeting with All Participants in Hotel Constanza Lobby<br />
|'''10:00-11am:''' <font color="#503020">Rapid Introduction of all Projects and Teams <br><br />
'''11am-3pm''' <font color="#503020">Work <br><br />
<br />
|<br />
'''10:00am-11am:''' <font color="#503020">'''Breakout Session:'''</font> - <br>[[2014_Project_Week_Breakout_Session: Slicer for users| Ask expert physicians]] (Ron Kikinis, Clare Tempany) <br><br />
'''11am-3pm''' <font color="#503020">Work<br />
| <font color="#503020">Work <br><br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffaa"|Lunch <br> [[Barcelona Restaurants|Places to Eat]] <br />
|bgcolor="#ffffaa"|Lunch<br> [[Barcelona Restaurants|Places to Eat]] <br />
|bgcolor="#ffffaa"|Lunch<br> [[Barcelona Restaurants|Places to Eat]] <br />
|-<br />
|bgcolor="#ffffdd"|'''4:00-7:00pm'''<br />
|<font color="#503020"> Work<br />
|'''5:00-7:00pm:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2015_Summer_Project_Week/SoftwareStack| Open Software Stack]] (Steve Pieper) <br>4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges. <br><br />
|'''4:00-5:00pm:''' <font color="#503020"> Work <br><br />
'''4:30-6pm:''' Report Progress<br />
|-<br />
|bgcolor="#ffffdd"|'''7:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|Adjourn for the day <br> [[Barcelona Restaurants|Places to Eat]] <br />
|bgcolor="#f0e68b"|Adjourn for the day <br> [http://www.barcelona-tourist-guide.com/en/events/sant-joan/feast-sant-joan.html Sant Joan Festival]<br />
|bgcolor="#f0e68b"|'''6:00pm''' Adjourn Project Week and relocate to CARS Opening<br> '''7:30pm''' CARS Welcome Reception <br />
|}<br />
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*Please note that start, end, and mealtimes have been set to match local schedules in Barcelona.<br />
*Here is a list of [[Barcelona Restaurants | locally recommended places to eat]] in the vicinity of the conference hotel. All participants are responsible for their own meals.<br />
<br />
== '''Background''' ==<br />
<br />
<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week. <br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program]. <br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 21st Project Week is being held on conjunction with the [http://www.cars-int.org/ CARS conference].<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]<br />
<br />
=Projects=<br />
* [[2015_Summer_Project_Week_Template | Template for project pages]]<br />
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<br />
==Equipment==<br />
<br />
*[[2015_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
<br />
==Image-Guided Therapy==<br />
*[[2015_Summer_Project_Week:SlicerIGT|SlicerIGT tutorials for use cases]] (Tamas, Andras, Jay, Steve, Alvaro, Javier, Adam, Caroline, Noby, Tina)<br />
*[http://www.na-mic.org/Wiki/index.php/2015_Refinement_Registration_Module Refinement of RegistrationModule] (Peter Behringer, Andrey Fedorov)<br />
*[[2015_Summer_Project_Week:IGTSliceletBase| Create base classes for IGT slicelet]] (Andras Lasso, Andrey Fedorov, Adam Rankin)<br />
*[http://www.na-mic.org/Wiki/index.php/2015_BRAINSFit_registration_in_SimpleITK BRAINSFit registration in SimpleITK] (Peter Behringer, Andrey Fedorov, Dženan Zukić)<br />
*[http://www.na-mic.org/Wiki/index.php/2015_Multi_atlas_based_prostate_segmentation Multi atlas based prostate segmentation] (Paolo Zaffino, Giampaolo Pileggi, Salvatore Scaramuzzino, Peter Behringer, Andrey Fedorov, Maria Francesca Spadea)<br />
*[http://www.na-mic.org/Wiki/index.php/2015_Multimodal_Guidance_for_Breast_Cancer_Surgery Multimodal Guidance for Breast Cancer Surgery] (Mikael Brudfors, David García, Javier Pascau)<br />
*[[2015_pilot trajectory planning | Pilot Trajectory Planning(Caroline Essert, Sonia Pujol)]]<br />
*[[2015_Summer_Project_Week:LinearFeatureRegistration|Linear Feature Registration]] (Matthew Holden)<br />
*[[2015_Summer_Project_Week:LightWeightRobotIGT | Integration of a KUKA robot using OpenIGTLink ]] (Sebastian Tauscher, Junichi Tokuda)<br />
*[[2015_Summer_Project_Week:USReconstruction | Gated 3D Ultrasound Reconstructions with the Help of a Single-Element US Transducer ]] (Frank Preiswerk, Laurent Chauvin)<br />
*[[2015 Orthognathic Surgery|Orthognathic Surgery]] (Dženan Zukić, Kitware)<br />
*[[2015_Summer_Project_Week:SlicerTAVI | SlicerTAVI ]] (Adam Rankin)<br />
*[http://www.na-mic.org/Wiki/index.php/2015_pyDBS pyDBS module update to Slicer4.4 (Sara Fernandez-Vidal, Yulong Zhao, Sonia Pujol)]<br />
*[[2015_Summer_Project_Week:OpenSource_MRTRUS_Fusion_for_Prostate_biopsy|Open-source MRI-TRUS Fusion for Prostate biopsy]] (Andrey Fedorov, Andras Lasso, Clare Tempany)<br />
*[[2015_Summer_Project_Week:TrackerlessMRIUSFusion | Trackerless MRI - US Registration ]] (Utsav Pardasani)<br />
*[[2015_Summer_Project_Week:SordinaLinacPath | Sordina LINAC Guidance ]] (Eugenio Marinetto)<br />
*[[2015_Summer_Project_Week:USRecon | US Reconstruction ]] (Steve Pieper, Tamas Ungi,Mikael Brudfors)<br />
<br />
==Feature Based Image Analysis==<br />
*[[2015_Summer_Project_Week:LungCAD| LungCAD]] (Jayender Jagadeesan, Tobias Penzkofer, Sandy Wells, Clara Meinzer, Raúl San José Estepar, Jorge Onieva)<br />
*[[2015_Summer_Project_Week:QuantitativeProstate | Texture Analysis for Prostate Imaging]] (Tobias Penzkofer, Jay Jagadeesan, Matthew Toews, Tina Kapur)<br />
*[[2015_Summer_Project_Week:BigDataFeatures | Big Data Medical Image Analysis using Local Features]] (Matthew Toews, William Wells, Raul San Jose Estepar, Tina Kapur)<br />
*[[2015_Summer_Project_Week:AutomaticCephalometric | Automatic Cephalometric Analysis ]] (J. Jesus Montufar, Marcelo Romero)<br />
<br />
==Chest Imaging Platform==<br />
*[[2015_Summer_Project_Week:Slicer_CIP | Slicer CIP: advanced features and deployment ]] (Raúl San José, Alex Yarmarkovich, Jorge Onieva)<br />
*[[2015_Summer_Project_Week:PAA_Ratio | PAA Ratio Module ]] (Jorge Onieva,Raúl San José)<br />
*[[2015_Summer_Project_Week:Tracheal_Stent_Planning | Planning for tracheal stents ]] (Raúl San José, Jorge Onieva, George Cheng)<br />
*[[2015_Summer_Project_Week:Atelectasis_Quantification | Volumetric Quantification of Atelectasis ]] (Ángel Torrado-Carvajal, Carolina Romero, Norberto Malpica)<br />
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==QIICR==<br />
*[[2015_Summer_Project_Week:DSC | Dynamic Susceptibility Contrast (DSC) MRI for brain ]] (Xiao Da, Yangming Ou, Andriy Fedorov, Steve Pieper, Jayashree Kalpathy-Cramer)<br />
*[[2015_Summer_Project_Week:T1 mapping | T1 mapping for Dynamic Contrast Enhanced (DCE) MRI ]] (Xiao Da, Yangming Ou, Andriy Fedorov, Jayashree Kalpathy-Cramer)<br />
*[[2015_Summer_Project_Week:DCMTK| Integration and testing of new DCMTK with Slicer]] (Michael Onken, Andrey Fedorov, Steve Pieper)<br />
<br />
==Infrastructure==<br />
*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin,Hans Meine)<br />
*[[2015_Summer_Project_Week:Integrated Virtual Reality Viewer | Integrated Virtual Reality Viewer]] (Franklin King, Utsav Pardasani)<br />
*[[2015_Summer_Project_Week:SegmentationNode| Use new Segmentation node in Editor]] (Andras Lasso, Steve Pieper)<br />
*[[2015_Summer_Project_Week:Slicer_Conda | Integrate Conda Python in Slicer]] (Jorge Onieva, Raúl San José, Utsav Pardasani, Steve Pieper)<br />
<br />
==Web==<br />
*[[2015_Summer_Project_Week:Dicom parsing with DCMJS | Dicom parsing with DCMJS]] (Nicolas Rannou, Yves Martelli, Michael Onken, Steve Pieper)<br />
*[[2015_Summer_Project_Week:Volume rendering with DCMJS and THREEJS | Volume Rendering with DCMJS and THREEJS]] (Nicolas Rannou, Steve Pieper)<br />
*[[2015_Summer_Project_Week:CTK for the web and touch devices| CTK for the web and touch devices]] (Nicolas Rannou, Yves Martelli, Steve Pieper)<br />
*[[2015_Summer_Project_Week:SlicerCardboard| Slicer for mobile-based vr goggles]] (Utsav Pardasani, Adam Rankin)<br />
*[[2015_Summer_Project_Week:PythonDevelopmentTutorial | Python developer tutorial]] (Adam Rankin)<br />
<br />
==Astronomy==<br />
*[[2015_Summer_Project_Week:Astronomy | Visualization of HI in galaxies]] (Davide Punzo)<br />
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== '''Registrants''' ==<br />
<br />
Please add your name to the list. This is the registration mechanism for this project week.<br />
#Tina Kapur, BWH<br />
#Ron Kikinis, BWH & Fraunhofer<br />
#Steve Pieper, Isomics<br />
#Tamas Ungi, Queen's University, Canada<br />
#Andras Lasso, Queen's University, Canada<br />
#Paolo Zaffino, ImagEngLab, Magna Graecia University, Italy<br />
#Salvatore Scaramuzzino, ImagEngLab, Magna Graecia University, Italy<br />
#Giampaolo Pileggi, ImagEngLab, Magna Graecia University, Italy<br />
#Nicole Aucoin, BWH<br />
#Sonia Pujol, BWH<br />
#Dženan Zukić, Kitware, Carrboro, NC<br />
#Jayender Jagadeesan, BWH<br />
#Guido Gerig, Utah<br />
#Sandy Wells, BWH<br />
#Matthew Toews, École de Technologie Supérieure, Montreal, Canada<br />
#Frank Preiswerk, BWH<br />
#Raul San Jose, BWH<br />
#Jorge Onieva, BWH<br />
#Yulong Zhao, Université de Rennes<br />
#Laurent Chauvin, BWH<br />
#Michael Onken, Open Connections<br />
#Tobias Penzkofer, Department of Radiology, Charité Berlin, Germany<br />
#Javier Pascau, Universidad Carlos III de Madrid, Spain<br />
#Angel Torrado-Carvajal, Universidad Rey Juan Carlos, Madrid, Spain<br />
#Nobuhiko Hata, BWH<br />
#Robert H. Owen, BK Medical ApS, Denmark<br />
#Clare Tempany, BWH<br />
#Adam Rankin, Robarts<br />
#Utsav Pardasani, Robarts<br />
#Marcelo Romero, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico<br />
#J. Jesus Montufar, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico<br />
#Davide Punzo, Kapteyn Astronomical Institute, University of Groningen, Netherlands<br />
#Andrey Fedorov, BWH<br />
#Nicolas Rannou, BCH<br />
#Mikael Brudfors, Universidad Carlos III de Madrid, Spain<br />
#Laura Sanz, Universidad Carlos III de Madrid, Spain<br />
#Eugenio Marinetto, Universidad Carlos III de Madrid, Spain<br />
#David García, Universidad Carlos III de Madrid, Spain<br />
#Franklin King, Queen's University / BWH<br />
#Jorge García, Universidad Politécnica de Madrid, Spain<br />
#Peter Behringer, BWH<br />
#Caroline Essert, University of Strasbourg<br />
#Sebastian Tauscher, Institute of Mechatronic Systems, Leibniz Universität Hannover, Germany<br />
#Matthew Holden, Queen's University, Canada<br />
#Sara Fernandez Vidal, ICM, France<br />
#Laszlo Kanyasi, Perk Lab affiliate, Hungary<br />
#Xiao Da, MGH<br />
#Arnaud De Bruecker, École supérieure d'informatique, Brussels, Belgium<br />
#Ali Gottschalk, École supérieure d'informatique, Brussels, Belgium<br />
#Christophe Teixeira Pereira, École supérieure d'informatique, Brussels, Belgium<br />
#Tsotne Shonia, École supérieure d'informatique, Brussels, Belgium<br />
#Clara Meinzer, Semmelweis University, Hungary<br />
#Yves Martelli, Galgo Medical, Barcelona, Spain<br />
#Alvaro Gomez (Universidad de la Republica, Uruguay)<br />
#Alfredo Higueras, Galgo Medical, Barcelona, Spain</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=AHM_2014&diff=87226AHM 20142014-08-06T18:05:01Z<p>Dchamberlain: /* Summary */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
[[File:AHM-2014-in-session.JPG|thumb|right|600px|The 2014 AHM in session]]<br />
[[image:PW-SLC2014.png|300px]]<br />
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<br />
Dates: January 6-10, 2014.<br />
<br />
Location: Salt Lake City, UT.<br />
<br />
== Introduction ==<br />
{| border="00" cellpadding="8" cellspacing="0"<br />
|-<br />
| rowspan="2" align="left" | '''This is the home page for the 2014 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.<br />
<br />
For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']]. <br />
<br />
For information about the January 2014 project week, see below.<br />
<br />
For information about Utah as a travel destination click [http://www.utah.com '''here'''].<br />
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]<br />
|-<br />
| style="background: #ebeced"|The 2014 AHM, EAB and Project Week will be held <br>'''January 6-10, 2014''', in '''Salt Lake City''', Utah. <br />
|}<br />
<br />
== Dates, Venue, Registration ==<br />
{|<br />
|align="left" style="width:60%"|<br />
'''Dates:'''<br />
* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 9th'''. <br />
* Project Activities will be held rest of the week between '''Monday, January 6th and Friday, January 10th'''.<br />
<br />
'''Registration:''' Please click [http://www.sci.utah.edu/namic2014.html '''here'''] to register online before '''January 2'''. All participants must pay a registration fee ('''$250''' for AHM only, and '''$550''' for AHM+Project Week), which covers our catering and facilities costs. <br />
After December 25 registration prices will increase by $100. Last call registrations after January 1st will be increased by $200. <br />
<br />
'''Venue:''' The venue for the meeting is the Marriott City Center, Salt Lake City, Utah. The room rate for the meeting is 149 USD per night, and the code is "NA-MIC 2014 Conference." You can book online, by clicking [http://www.marriott.com/meeting-event-hotels/group-corporate-travel/groupCorp.mi?resLinkData=NA-MIC%202014%20Conference^SLCCC%60NACNACA%60149%60USD%60false%601/5/14%601/10/14%6012/06/13&app=resvlink&stop_mobi=yes here.] PLEASE NOTE THAT THE DEADLINE FOR BOOKING ROOMS AT THESE RATES IS DECEMBER 13th.<br />
<br />
== Agenda== <br />
<br />
'''[https://www.google.com/calendar/embed?src=kitware.com_hmsjf9uq4e0mmft8ihj4aag1vg@group.calendar.google.com&ctz=America/Denver&mode=WEEK&showNav=0&showDate=0&showTabs=0&showCalendars=0&showTz=0&showPrint=0 Google Calendar version of agenda]'''<br />
<br />
{| border="1" cellpadding="5"<br />
|- style="background:#eeeeee; font-size:125%; color:#0063B6" align="center" <br />
| style="width:5%"| '''Time'''<br />
| style="width:15%" | '''Monday, January 6''' <br />
| style="width:15%" | '''Tuesday, January 7'''<br />
| style="width:15%" | '''Wednesday, January 8''' <br />
| style="width:35%" | '''Thursday, January 9 '''<br />
| style="width:15%" | '''Friday, January 10''' <br />
|-<br />
| style="background:#eeeeee; color:black"|<br />
| style="background:#ffffff; color:#522200"| '''[[2014_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#dbf3ff; color:#522200"| '''[[2014_Winter_Project_Week|Project Activities]] '''<br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#dbf3ff; color:#522200"| '''[[2014_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#F2E5D3; color:#522200"| '''AHM and [http://wiki.na-mic.org/Wiki/index.php/2014_EAB EAB]''' <br><font color="#44AA88">''(Olympus B)''</font> <br>[[2014_Winter_Project_Week|Project Activities]] <br><font color="#44AA88">''(Amethyst 1 & 2)''</font><br />
| style="background:#dbf3ff; color:#522200"|'''[[2014_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Olympus B)''</font><br />
|-<br />
| style="background:#eeeeee; color:black"|'''7:30-8:00''' <br />
| style="background:#ffffff; color:black"| <br />
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#F2E5D3; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
|-<br />
| style="background:#eeeeee; color:black"|'''8:00-10:00''' <br />
| <br><font color="#9966cc"></font><br />
|9-10am: [[2014 Winter Project Week DICOM Breakout|Breakout Session:DICOM]] (Steve Pieper) <br><font color="#44AA88">''(Amethyst 1)''</font> <br> <br />
|9-10am: [[2014 Winter Project Week QIICR Breakout|Breakout Session:QIICR]] (Andrey Fedorov) <br><font color="#44AA88">''(Amethyst 1)''</font> <br> <br />
| '''8-8:05am:''' Welcome (Ron Kikinis) <br><br />
'''8:05-8:15am:''' [[2014 How about the Future|How about the future?]] (Ron Kikinis) <br><br />
'''8:15-9:15am:''' [[AHM_2014_alg_core_presentations | Algorithms Core: Update and Future Plans]] <br> '''9:20-9:55am:''' Invited Speaker: Wiro Niessen, Erasmus MC. [[media:NAMIC QIB ImagingGenetics Neuro 2014 Niessen.pdf|"Quantitative Imaging Biomarkers and Imaging Genetics in Neurodegenerative Disease"]]<br><br />
| style="background:#dbf3ff; color:#522200"|[[2014_Winter_Project_Week|9am: Project Presentations]]<br><font color="#44AA88">''(Olympus B)''</font><br />
|-<br />
| style="background:#eeeeee; color:black"|'''10:00-10:30'''<br />
| style="background:#ffffff; color:black"|<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
|-<br />
| style="background:#eeeeee; color:black"|'''10:30-12:00'''<br />
| <br />
| Algorithms PI meeting <br><font color="#BB9933">''(Amethyst 2)''</font> <br />
| [[2014 Winter Project Week DTI Tools Breakout|Breakout Session: DTI Tools]] (Martin Styner) <br><font color="#44AA88">''(Amethyst 2)''</font> <br> <br />
| DBP Update and Future Plans<br> '''10:30-10:55am:''' TBI (Jack Van Horn, [[Media:NAMIC_AHM_2014_van_horn.pdf|Slides]]) <br> '''10:55-11:20am:''' Huntington's Disease (Hans Johnson, [[Media:20140110_IowaDBPProgress.pdf|Slides]]) <br> '''11:20-11:45am:''' Head and Neck Cancer (Greg Sharp, [[Media:NAMIC-AHM-2014-01-Sharp.pdf|Slides]]) <br> '''11:45-12:10pm:''' Atrial Fibrillation (Rob MacLeod, [[Media:DBP-AF-report2014-C.pdf|Slides]]) <br> '''<br />
|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''12:00-1:00''' <br />
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font> <br> <br />
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br> <br />
| style="background:#F2E5D3; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Boxed Lunch and Adjourn <br><font color="#BB9933">''(Olympus A)''</font> <br />
|-<br />
| style="background:#eeeeee; color:black"|'''1:00-3:00'''l <br />
| style="background:#dbf3ff; color:#522200"|[[2014_Winter_Project_Week|Project Presentations]]<br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#dbf3ff; color:#522200"|[[2014_SLC_Training_Workshop|Slicer Training Workshop (Sonia Pujol, Ron Kikinis)]] <br><font color="#44AA88">''(Amethyst 1)''</font> <br> <br />
|'''DBP Team Meetings''' <br><font color="#44AA88">''(Amethyst 1)''</font> <br> '''1-2pm:''' [[DBP MGH Head and Neck Cancer 2014]] <br>'''2-3pm:''' [[DBP Utah Atrial Fibrillation 2014]] <br />
| <br />
'''1:15-1:30pm:''' [[Media:TMJOA_Namic_2014.pptx|Collaboration R01: Quantification Of 3d Bony Changes In Temporomandibular Joint Osteoarthritis]] (Lucia Cevidanes, University of Michigan) <br><br />
'''1:30-2:15pm:''' [[AHM2014-Engineering_Updates | Engineering Core: Updates and Future Plans]] <br> '''2:15-2:45pm:''' [[Media:AHM2014_TrainingCore_SoniaPujol.pdf | Outreach ]] (Sonia Pujol, Steve Pieper) <br> <br />
|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''3:00-3:30''' <br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''<br />
| style="background:#ffffff; color:black"|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''3:00-5:00''' <br />
|<br />
|3:15-4pm: [[AHM2014-SubjectHierarchy|Breakout Session: Subject Hierarchy]] <br><font color="#44AA88">''(Amethyst 2)'' <br> 4:15-5pm: [[AHM2014-Simple-ITK|SimpleITK Breakout Session]]</font> <br> <font color="#44AA88">''(Amethyst 1)''</font><br />
|'''DBP Team Meetings''' <br><font color="#44AA88">''(Amethyst 1)''</font> <br> '''3-4pm:''' [[DBP UCLA Traumatic Brain Injury 2014]] <br>'''4-5pm:''' [[DBP Iowa Huntington's Disease 2014]]<br />
|'''3-4pm''': [[2014_EAB|EAB meeting]] (Core, Site, and DBP PIs to join) <br><font color="#9966cc">''(Sundance)''</font><br> '''4-5pm:''' EAB closed session <br><font color="#9966cc">''(Sundance)''</font><br />
| style="background:#ffffff; color:black"|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''05:00-07:00''' <br />
| style="background:#dbf3ff; color:black"|<br />
| style="background:#dbf3ff; color:black"|<br />
| style="background:#dbf3ff; color:black"|<br />
| style="background:#F2E5D3; color:black"|'''6:00''' Optional: [http://www.murphysbarandgrillut.com/ Beer at Murphy's] (like last year)<br />
| style="background:#ffffff; color:black"| <br />
|}<br />
<br />
[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Floorplan]<br />
<br />
<br />
'''General Announcements:'''<br />
<br />
*Murphy's Reception is on Thursday, January 9th. The price per person is the same as last year $35. Please see Donna at the registration table to pre-pay for dinner.<br />
<br />
==Registered Attendees==<br />
<br />
<big>'''NOTE:'''</big> <font color="maroon">The registered attendee list will be posted here by the organizers. '''DO NOT''' add your name to this list yourself.</font> To register, please click [http://www.sci.utah.edu/namic2014-registration.html here].<br />
<br />
# Ackerman , Michael , EAB<br />
# Aucoin , Nicole , BWH<br />
# Aylward , Stephen , Kitware<br />
# Bengali , Salma , SCI Institute<br />
# Binder , Polina , MIT<br />
# Blumenfeld , Morry , EAB<br />
# Boen , Vinicius , The University of Michigan<br />
# Bronson , Jonathan , SCI Institute<br />
# Budin , Francois , UNC<br />
# Cates , Joshua , SCI Institute<br />
# Cevidanes , Lucia , The University of Michigan<br />
# Clogenson , Marine , EPFL<br />
# COOK , JAMES , Duke University<br />
# Diedrich , Karl , AZE Technology, Inc.<br />
# Evans , John , MGH<br />
# Fedorov , Andriy , BWH<br />
# Fillion-Robin , Jean-Christophe , Kitware<br />
# Fishbaugh , James , SCI Institute<br />
# Gao , Yi , UAB<br />
# Girault , Alexis , University of North Carolina at Chapel Hill<br />
# Golland , Polina , MIT CSAIL<br />
# Harmouche , Rola , Brigham and Womens Hospital<br />
# Herrick , Rick , Neuroinformatics Research Group<br />
# Jain , Saurabh , Johns Hopkins University<br />
# Johnson , Chris , EAB<br />
# Johnson , Hans , University of Iowa<br />
# Kalpathy-Cramer , Jayashree , MGH<br />
# Kikinis , Ron , SPL, BWH, Harvard<br />
# Kim , Eun Young , University of Iowa<br />
# King , Franklin , Queens University<br />
# Kochis , Donna , Kitware<br />
# Kolesov , Ivan , Stony Brook University<br />
# Lasso , Andras , Queens University<br />
# Liang , Lichen , MGH<br />
# Lorensen , Bill , EAB<br />
# Lowekamp , Bradley , <br />
# Macleod , Rob , SCI Institute<br />
# McCormick , Matthew , Kitware, Inc<br />
# Mehrtash , Alireza , Brigham and Womens Hospital<br />
# Miller , James , GE Research<br />
# Napel , Sandy , EAB<br />
# Nardelli , Pietro , Brigham and Womens Hospital<br />
# ODonnell , Lauren , BWH<br />
# Pace , Danielle , MIT<br />
# Pieper , Steve , Isomics<br />
# Pinter , Csaba , Queens University<br />
# Prastawa , Marcel , General Electric<br />
# Prior , Fred , EAB<br />
# Pujol , Sonia , BWH<br />
# Ross , James , Brigham and Womens Hospital<br />
# San Jose , Raul , Brigham and Womens Hospital<br />
# Savadjiev , Peter , Brigham and Womens Hospital<br />
# Sharma , Anuja , SCI Institute<br />
# Sharp , Gregory , MGH<br />
# Shusharina , Nadya , Massachusetts General Hospital<br />
# Sridharan , Ramesh , MIT<br />
# Styner , Martin , University of North Carolina<br />
# Tannenbaum , Allen , Stony Brook University<br />
# Toews , Matthew , BWH, Harvard Medical School<br />
# Tokuda , Junichi , BWH<br />
# Ulrich , Ethan , University of Iowa<br />
# Vast , Erwin , <br />
# Wang , Kevin , Princess Margaret Cancer Centre<br />
# Wang , Bo , SCI Institute<br />
# Welch , David , University of Iowa<br />
# Whitaker , Ross , SCI Institute<br />
# Yamada , Atsushi , Shiga University of Medical Science<br />
# Yarmarkovich , Alexander , Isomics<br />
# Yoo , Terry , EAB<br />
# Zhu , Liangjia , Stony Brook University</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=AHM_2014&diff=87225AHM 20142014-08-06T16:26:44Z<p>Dchamberlain: /* Introduction */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
[[File:AHM-2014-in-session.JPG|thumb|right|600px|The 2014 AHM in session]]<br />
[[image:PW-SLC2014.png|300px]]<br />
<br />
<br />
<br />
Dates: January 6-10, 2014.<br />
<br />
Location: Salt Lake City, UT.<br />
<br />
==Summary==<br />
The 18th PROJECT EVENT was held January 6-10, 2014 in Salt Lake City. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites (Brigham and Women's Hospital, University of Alabama, UNC Chapel Hill, MIT, UIowa, Queen University, Massachusetts General Hospital, Princess Margaret Hospital, University of Michigan, Johns Hopkins University, Stony Brook University, Shiga University of Medical Science, SCI Institute) and 4 companies (Kitware, Isomics, GE Research, AZE Technology). The agenda and projects are detailed below.<br />
<br />
== Introduction ==<br />
{| border="00" cellpadding="8" cellspacing="0"<br />
|-<br />
| rowspan="2" align="left" | '''This is the home page for the 2014 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.<br />
<br />
For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']]. <br />
<br />
For information about the January 2014 project week, see below.<br />
<br />
For information about Utah as a travel destination click [http://www.utah.com '''here'''].<br />
| style="background: #ebeced" align="center"| [[Image:SLC.jpg|center|350px|View of the City]]<br />
|-<br />
| style="background: #ebeced"|The 2014 AHM, EAB and Project Week will be held <br>'''January 6-10, 2014''', in '''Salt Lake City''', Utah. <br />
|}<br />
<br />
== Dates, Venue, Registration ==<br />
{|<br />
|align="left" style="width:60%"|<br />
'''Dates:'''<br />
* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 9th'''. <br />
* Project Activities will be held rest of the week between '''Monday, January 6th and Friday, January 10th'''.<br />
<br />
'''Registration:''' Please click [http://www.sci.utah.edu/namic2014.html '''here'''] to register online before '''January 2'''. All participants must pay a registration fee ('''$250''' for AHM only, and '''$550''' for AHM+Project Week), which covers our catering and facilities costs. <br />
After December 25 registration prices will increase by $100. Last call registrations after January 1st will be increased by $200. <br />
<br />
'''Venue:''' The venue for the meeting is the Marriott City Center, Salt Lake City, Utah. The room rate for the meeting is 149 USD per night, and the code is "NA-MIC 2014 Conference." You can book online, by clicking [http://www.marriott.com/meeting-event-hotels/group-corporate-travel/groupCorp.mi?resLinkData=NA-MIC%202014%20Conference^SLCCC%60NACNACA%60149%60USD%60false%601/5/14%601/10/14%6012/06/13&app=resvlink&stop_mobi=yes here.] PLEASE NOTE THAT THE DEADLINE FOR BOOKING ROOMS AT THESE RATES IS DECEMBER 13th.<br />
<br />
== Agenda== <br />
<br />
'''[https://www.google.com/calendar/embed?src=kitware.com_hmsjf9uq4e0mmft8ihj4aag1vg@group.calendar.google.com&ctz=America/Denver&mode=WEEK&showNav=0&showDate=0&showTabs=0&showCalendars=0&showTz=0&showPrint=0 Google Calendar version of agenda]'''<br />
<br />
{| border="1" cellpadding="5"<br />
|- style="background:#eeeeee; font-size:125%; color:#0063B6" align="center" <br />
| style="width:5%"| '''Time'''<br />
| style="width:15%" | '''Monday, January 6''' <br />
| style="width:15%" | '''Tuesday, January 7'''<br />
| style="width:15%" | '''Wednesday, January 8''' <br />
| style="width:35%" | '''Thursday, January 9 '''<br />
| style="width:15%" | '''Friday, January 10''' <br />
|-<br />
| style="background:#eeeeee; color:black"|<br />
| style="background:#ffffff; color:#522200"| '''[[2014_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#dbf3ff; color:#522200"| '''[[2014_Winter_Project_Week|Project Activities]] '''<br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#dbf3ff; color:#522200"| '''[[2014_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#F2E5D3; color:#522200"| '''AHM and [http://wiki.na-mic.org/Wiki/index.php/2014_EAB EAB]''' <br><font color="#44AA88">''(Olympus B)''</font> <br>[[2014_Winter_Project_Week|Project Activities]] <br><font color="#44AA88">''(Amethyst 1 & 2)''</font><br />
| style="background:#dbf3ff; color:#522200"|'''[[2014_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Olympus B)''</font><br />
|-<br />
| style="background:#eeeeee; color:black"|'''7:30-8:00''' <br />
| style="background:#ffffff; color:black"| <br />
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#F2E5D3; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font><br />
|-<br />
| style="background:#eeeeee; color:black"|'''8:00-10:00''' <br />
| <br><font color="#9966cc"></font><br />
|9-10am: [[2014 Winter Project Week DICOM Breakout|Breakout Session:DICOM]] (Steve Pieper) <br><font color="#44AA88">''(Amethyst 1)''</font> <br> <br />
|9-10am: [[2014 Winter Project Week QIICR Breakout|Breakout Session:QIICR]] (Andrey Fedorov) <br><font color="#44AA88">''(Amethyst 1)''</font> <br> <br />
| '''8-8:05am:''' Welcome (Ron Kikinis) <br><br />
'''8:05-8:15am:''' [[2014 How about the Future|How about the future?]] (Ron Kikinis) <br><br />
'''8:15-9:15am:''' [[AHM_2014_alg_core_presentations | Algorithms Core: Update and Future Plans]] <br> '''9:20-9:55am:''' Invited Speaker: Wiro Niessen, Erasmus MC. [[media:NAMIC QIB ImagingGenetics Neuro 2014 Niessen.pdf|"Quantitative Imaging Biomarkers and Imaging Genetics in Neurodegenerative Disease"]]<br><br />
| style="background:#dbf3ff; color:#522200"|[[2014_Winter_Project_Week|9am: Project Presentations]]<br><font color="#44AA88">''(Olympus B)''</font><br />
|-<br />
| style="background:#eeeeee; color:black"|'''10:00-10:30'''<br />
| style="background:#ffffff; color:black"|<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
|-<br />
| style="background:#eeeeee; color:black"|'''10:30-12:00'''<br />
| <br />
| Algorithms PI meeting <br><font color="#BB9933">''(Amethyst 2)''</font> <br />
| [[2014 Winter Project Week DTI Tools Breakout|Breakout Session: DTI Tools]] (Martin Styner) <br><font color="#44AA88">''(Amethyst 2)''</font> <br> <br />
| DBP Update and Future Plans<br> '''10:30-10:55am:''' TBI (Jack Van Horn, [[Media:NAMIC_AHM_2014_van_horn.pdf|Slides]]) <br> '''10:55-11:20am:''' Huntington's Disease (Hans Johnson, [[Media:20140110_IowaDBPProgress.pdf|Slides]]) <br> '''11:20-11:45am:''' Head and Neck Cancer (Greg Sharp, [[Media:NAMIC-AHM-2014-01-Sharp.pdf|Slides]]) <br> '''11:45-12:10pm:''' Atrial Fibrillation (Rob MacLeod, [[Media:DBP-AF-report2014-C.pdf|Slides]]) <br> '''<br />
|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''12:00-1:00''' <br />
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font> <br> <br />
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br> <br />
| style="background:#F2E5D3; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br />
| style="background:#dbf3ff; color:black"| Boxed Lunch and Adjourn <br><font color="#BB9933">''(Olympus A)''</font> <br />
|-<br />
| style="background:#eeeeee; color:black"|'''1:00-3:00'''l <br />
| style="background:#dbf3ff; color:#522200"|[[2014_Winter_Project_Week|Project Presentations]]<br><font color="#44AA88">''(Olympus B)''</font><br />
| style="background:#dbf3ff; color:#522200"|[[2014_SLC_Training_Workshop|Slicer Training Workshop (Sonia Pujol, Ron Kikinis)]] <br><font color="#44AA88">''(Amethyst 1)''</font> <br> <br />
|'''DBP Team Meetings''' <br><font color="#44AA88">''(Amethyst 1)''</font> <br> '''1-2pm:''' [[DBP MGH Head and Neck Cancer 2014]] <br>'''2-3pm:''' [[DBP Utah Atrial Fibrillation 2014]] <br />
| <br />
'''1:15-1:30pm:''' [[Media:TMJOA_Namic_2014.pptx|Collaboration R01: Quantification Of 3d Bony Changes In Temporomandibular Joint Osteoarthritis]] (Lucia Cevidanes, University of Michigan) <br><br />
'''1:30-2:15pm:''' [[AHM2014-Engineering_Updates | Engineering Core: Updates and Future Plans]] <br> '''2:15-2:45pm:''' [[Media:AHM2014_TrainingCore_SoniaPujol.pdf | Outreach ]] (Sonia Pujol, Steve Pieper) <br> <br />
|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''3:00-3:30''' <br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''<br />
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''<br />
| style="background:#ffffff; color:black"|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''3:00-5:00''' <br />
|<br />
|3:15-4pm: [[AHM2014-SubjectHierarchy|Breakout Session: Subject Hierarchy]] <br><font color="#44AA88">''(Amethyst 2)'' <br> 4:15-5pm: [[AHM2014-Simple-ITK|SimpleITK Breakout Session]]</font> <br> <font color="#44AA88">''(Amethyst 1)''</font><br />
|'''DBP Team Meetings''' <br><font color="#44AA88">''(Amethyst 1)''</font> <br> '''3-4pm:''' [[DBP UCLA Traumatic Brain Injury 2014]] <br>'''4-5pm:''' [[DBP Iowa Huntington's Disease 2014]]<br />
|'''3-4pm''': [[2014_EAB|EAB meeting]] (Core, Site, and DBP PIs to join) <br><font color="#9966cc">''(Sundance)''</font><br> '''4-5pm:''' EAB closed session <br><font color="#9966cc">''(Sundance)''</font><br />
| style="background:#ffffff; color:black"|<br />
|-<br />
| style="background:#eeeeee; color:black"|'''05:00-07:00''' <br />
| style="background:#dbf3ff; color:black"|<br />
| style="background:#dbf3ff; color:black"|<br />
| style="background:#dbf3ff; color:black"|<br />
| style="background:#F2E5D3; color:black"|'''6:00''' Optional: [http://www.murphysbarandgrillut.com/ Beer at Murphy's] (like last year)<br />
| style="background:#ffffff; color:black"| <br />
|}<br />
<br />
[http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ Floorplan]<br />
<br />
<br />
'''General Announcements:'''<br />
<br />
*Murphy's Reception is on Thursday, January 9th. The price per person is the same as last year $35. Please see Donna at the registration table to pre-pay for dinner.<br />
<br />
==Registered Attendees==<br />
<br />
<big>'''NOTE:'''</big> <font color="maroon">The registered attendee list will be posted here by the organizers. '''DO NOT''' add your name to this list yourself.</font> To register, please click [http://www.sci.utah.edu/namic2014-registration.html here].<br />
<br />
# Ackerman , Michael , EAB<br />
# Aucoin , Nicole , BWH<br />
# Aylward , Stephen , Kitware<br />
# Bengali , Salma , SCI Institute<br />
# Binder , Polina , MIT<br />
# Blumenfeld , Morry , EAB<br />
# Boen , Vinicius , The University of Michigan<br />
# Bronson , Jonathan , SCI Institute<br />
# Budin , Francois , UNC<br />
# Cates , Joshua , SCI Institute<br />
# Cevidanes , Lucia , The University of Michigan<br />
# Clogenson , Marine , EPFL<br />
# COOK , JAMES , Duke University<br />
# Diedrich , Karl , AZE Technology, Inc.<br />
# Evans , John , MGH<br />
# Fedorov , Andriy , BWH<br />
# Fillion-Robin , Jean-Christophe , Kitware<br />
# Fishbaugh , James , SCI Institute<br />
# Gao , Yi , UAB<br />
# Girault , Alexis , University of North Carolina at Chapel Hill<br />
# Golland , Polina , MIT CSAIL<br />
# Harmouche , Rola , Brigham and Womens Hospital<br />
# Herrick , Rick , Neuroinformatics Research Group<br />
# Jain , Saurabh , Johns Hopkins University<br />
# Johnson , Chris , EAB<br />
# Johnson , Hans , University of Iowa<br />
# Kalpathy-Cramer , Jayashree , MGH<br />
# Kikinis , Ron , SPL, BWH, Harvard<br />
# Kim , Eun Young , University of Iowa<br />
# King , Franklin , Queens University<br />
# Kochis , Donna , Kitware<br />
# Kolesov , Ivan , Stony Brook University<br />
# Lasso , Andras , Queens University<br />
# Liang , Lichen , MGH<br />
# Lorensen , Bill , EAB<br />
# Lowekamp , Bradley , <br />
# Macleod , Rob , SCI Institute<br />
# McCormick , Matthew , Kitware, Inc<br />
# Mehrtash , Alireza , Brigham and Womens Hospital<br />
# Miller , James , GE Research<br />
# Napel , Sandy , EAB<br />
# Nardelli , Pietro , Brigham and Womens Hospital<br />
# ODonnell , Lauren , BWH<br />
# Pace , Danielle , MIT<br />
# Pieper , Steve , Isomics<br />
# Pinter , Csaba , Queens University<br />
# Prastawa , Marcel , General Electric<br />
# Prior , Fred , EAB<br />
# Pujol , Sonia , BWH<br />
# Ross , James , Brigham and Womens Hospital<br />
# San Jose , Raul , Brigham and Womens Hospital<br />
# Savadjiev , Peter , Brigham and Womens Hospital<br />
# Sharma , Anuja , SCI Institute<br />
# Sharp , Gregory , MGH<br />
# Shusharina , Nadya , Massachusetts General Hospital<br />
# Sridharan , Ramesh , MIT<br />
# Styner , Martin , University of North Carolina<br />
# Tannenbaum , Allen , Stony Brook University<br />
# Toews , Matthew , BWH, Harvard Medical School<br />
# Tokuda , Junichi , BWH<br />
# Ulrich , Ethan , University of Iowa<br />
# Vast , Erwin , <br />
# Wang , Kevin , Princess Margaret Cancer Centre<br />
# Wang , Bo , SCI Institute<br />
# Welch , David , University of Iowa<br />
# Whitaker , Ross , SCI Institute<br />
# Yamada , Atsushi , Shiga University of Medical Science<br />
# Yarmarkovich , Alexander , Isomics<br />
# Yoo , Terry , EAB<br />
# Zhu , Liangjia , Stony Brook University</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=2014_Summer_Project_Week&diff=872192014 Summer Project Week2014-07-23T12:05:27Z<p>Dchamberlain: /* Agenda */</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-MIT2014.png|300px]]<br />
[[image:Projectweek-2014-06-23-IMG 0837.JPG|800px|opening session]]<br />
<br><br />
Dates: June 23-27, 2014.<br />
<br />
Location: MIT, Cambridge, MA.<br />
<br><br />
[[image:Projectweek-19.5.JPG|800px|opening session]]<br />
<br />
<br />
==Summary==<br />
The last project week was the 19th event in the series. It was held June 23-27, 2014 at MIT. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, MIT, WPI, Univ of Utah, Univ of Iowa, Univ of Michigan, Univ of North Carolina at Chapel Hill, Queen’s Univ, Univ of Sydney, Univ Magna Graecia of Catanzaro, Old Dominion Univ, Univ of CA San Diego, Johns Hopkins Univ, Stony Brook Univ, Univ of Washington, NIH, Seattle Children's Research Institute, Univ College Cork, Ben-Gurion Univ, Princess Margaret Cancer Centre) and 4 companies (GE Global Research, Kitware, Fraunhofer MEVIS, Isomics Inc). <br />
<br />
==Agenda==<br />
<br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f" <br />
!style="width:10%" |Time<br />
!style="width:18%" |Monday, June 23<br />
!style="width:18%" |Tuesday, June 24<br />
!style="width:18%" |Wednesday, June 25<br />
!style="width:18%" |Thursday, June 26<br />
!style="width:18%" |Friday, June 27<br />
|-<br />
|<br />
|bgcolor="#dbdbdb"|'''Project Presentations''' <br />
|bgcolor="#6494ec"|'''NA-MIC Update Day'''<br />
|<br />
|bgcolor="#88aaae"|'''IGT Day'''<br />
|bgcolor="#faedb6"|'''Reporting Day'''<br />
|-<br />
|bgcolor="#ffffdd"|'''8:30am'''<br />
|<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast (Stata Building 4th Floor R&D Common Dining Area)<br />
|-<br />
|bgcolor="#ffffdd"|'''9am-12pm'''<br />
|<br />
|'''10-11:30am''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: DICOM|DICOM]] (Steve Pieper)<br />
[[MIT_Project_Week_Rooms#Star|Star]]<br />
|<br />
'''11am-12noon''' Breakout Session: [[2014_Project_Week_Breakout_Session: Slicer for users| Slicer for users]] (Ron Kikinis)<br />
<br><br />
|'''9:00-10:30am''' [[2014_Tutorial_Contest|Tutorial Contest Presentations (Sonia Pujol)]] <br><br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
<br>----------------------------------------<br><br />
'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: IGT Neuro|Image-Guided Therapy - Neurosurgery]] (Alexandra Golby, Tina Kapur) <br><br />
[[MIT_Project_Week_Rooms#Star|Star]]<br />
|'''10am-12pm:''' [[#Projects|Project Progress Updates]] (Stata Building 4th Floor R&D Common Dining Area)<br />
<br>----------------------------------------<br><br />
'''12pm''' [[Events:TutorialContestJune2014|Tutorial Contest Winner Announcement]]<br />
(Stata Building 4th Floor R&D Common Dining Area)<br />
<br />
|-<br />
|bgcolor="#ffffdd"|'''12pm-1pm'''<br />
|bgcolor="#ffffaa"|Lunch <br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch boxes; Adjourn by 1:30pm<br />
|-<br />
|bgcolor="#ffffdd"|'''1pm-5:30pm'''<br />
|'''1-1:05pm: <font color="#503020">Ron Kikinis: Welcome</font>'''<br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
<br>----------------------------------------<br><br />
'''1:05-3:30pm:''' [[#Projects|Project Introductions]] (all Project Leads)<br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
<br>----------------------------------------<br><br />
'''3:30-4:30pm''' [[2014 Summer Project Week Breakout Session:SlicerExtensions|Slicer4 Extensions]] (Jean-Christophe Fillion-Robin) <br><br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Room (Left)]]<br />
|'''1-3pm:''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: QIICR|QIICR]] (Andrey Fedorov)<br />
[[MIT_Project_Week_Rooms#Kiva|Kiva]] <br />
|'''1-2:30pm:''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: Contours|Contours]] (Adam Rankin, Csaba Pinter)<br />
[[MIT_Project_Week_Rooms#Kiva|Kiva]] <br />
|'''1-3pm:''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: IGT Prostate|Image-Guided Therapy - Prostate Interventions]] (Clare Tempany, Noby Hata)<br />
[[MIT_Project_Week_Rooms#Star|Star]] <br />
<br>----------------------------------------<br><br />
|<br />
|-<br />
|bgcolor="#ffffdd"|'''5:30pm'''<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|<br />
|}<br />
<br />
== '''Background''' ==<br />
<br />
<br />
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January. <br />
<br />
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.<br />
<br />
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]<br />
<br />
=Projects=<br />
* [[2014_Project_Week_Template | Template for project pages]]<br />
<br />
==Image-Guided Therapy==<br />
<br />
* [[2014_Summer_Project_Week:SlicerIGT|SlicerIGT extension: testing, tutorials, website]] (Tamas Ungi, Nobuhiko Hata, Tina Kapur)<br />
* [[2014_Summer_Project_Week:Robot_Control_With_OpenIGTLink | Robot Control With OpenIGTLink]] ( Gregory Fischer WPI, Nirav Patel WPI, Nobuhiko Hata BWH)<br />
*[[2014_Summer_Project_Week:Visual_Guidance_for_Neurosurgery_US_Recording |Visual Guidance for Neurosurgery US Data Recording<br />
]] (Alireza, Isaiah, Rahul, Matthew, Tina, Steve, Sandy, Alex Golby)<br />
* [[Gestural Point of Care Interface for IGT]] (Saskia, Franklin, Steve, Tobias, Andras)<br />
* [[2014_Summer_Project_Week:Intelligent_Steering | Steered image registration using intelligent interfaces for minimal user interaction]] (Marcel Prastawa, Jim Miller, Steve Pieper)<br />
* [[2014_Summer_Project_Week:CBC_3D_I2MConversion | CBC 3D I2M Conversion ]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov, Ron Kikinis, Nikos Chrisochoides)<br />
* [[2014_Summer_Project_Week:An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift | An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz, Ron Kikinis, Nikos Chrisochoides)<br />
* [[2014_Summer_Project_Week:Open_source_electromagnetic_trackers_usingOpenIGTLink| Open-source electromagnetic trackers using OpenIGTLink]] (Peter Traneus Anderson, Tina Kapur, Sonia Pujol)<br />
*[[2014_Summer_Project_Week:Intraoperative_Registration_of_preoperative_CT_and_C-arm_CT_of_the_lung | Intraoperative Registration of preoperative CT and C-arm CT of the lung]] (Katharina Breininger, Jay Jagadeesan)<br />
*[[2014_Summer_Project_Week:Image guided neuroendoscope | Making realistic clinical story board for image guided skull base endoscopic surgery]] (Keryn Palmer, Nobuhiko Hata)<br />
*[[2014_Summer_Project_Week:PathExplorer_Extension | PathExplorer Extension (code refactoring, documentation, tutorial)]] (Laurent Chauvin, Tamas Ungi, Nobuhiko Hata)<br />
*[[2014_Summer_Project_Week:MR-Ultrasound_Registration_for_Prostate_Interventions | MR-Ultrasound Registration for Prostate Interventions]] (Andriy Fedorov, Chenxi Zhang, Andras Lasso)<br />
*[[2014_Summer_Project_Week:Surface_approximation_from_contour_points | Surface approximation from contour points]] (Chenxi Zhang, Csaba Pinter, Andrey Fedorov)<br />
*[[2014_Summer_Project_Week:Cortical_Dysplasia_Identification | Tools for Dysplasia Identification in Epilepsy]] (Luiz Murta; Emylin Souza; Tina Kapur; Ron Kikinis)<br />
*[[2014_Summer_Project_Week:Focused_Ultrasound_Pressure_Sensor| Focused Ultrasound Pressure Sensor ]] (Robin Kouver, Nassim Alikacem) <br />
*[[2014_Summer_Project_Week:Focused_Ultrasound_Positioner| Focused Ultrasound Positioner ]] (Nassim Alikacem, Robin Kouver) <br />
*[[2014_Summer_Project_Week:Software_Platform_for_Robotic_Surgery|Searching for Software Platform for Robotic Surgery]] (Yangming Li)<br />
*[[2014_Summer_Project_Week:mipiX | Rapid Visualization of Large Image Collections]] (Adrian, Ramesh, Polina)<br />
*[[2014_Summer_Project_Week:Ventriculostomy_Guidance_Transcranial_Ultrasound |Ventriculostomy Guidance with Transcranial Ultrasound<br />
]] (Jason White, Kirby Vosburgh, Can Meral, Alex Golby)<br />
*[[2014_Summer_Project_Week:EM-tracked_prostate_US_calibration_with_Plus|Calibration of EM-tracked US acquisition using Plus]] (Andrey Fedorov, Tamas Ungi, Andras Lasso, Jay Jagadeesan)<br />
<br />
==Huntington's Disease==<br />
*[[2014_Summer_Project_Week:FiberTractDispersion| Fiber Tract Dispersion and UKF Tractography]] (Peter Savadjiev, Yogesh Rathi, Hans Johnson, C-F Westin)<br />
*[[2014_Summer_Project_Week:LongitudinalSeg| 4D Segmentation for Longitudinal Consistency ]] (Regina Kim, James Fishbaugh, Guido Gerig, Hans Johnson)<br />
*[[2014_Summer_Project_Week:AutomatedSegmentationQA | Automated Prior-driven Segmentation QA]] (Dave Welch, Hans Johnson)<br />
*[[2014_Summer_Project_Week:ManualSegmentationQA | Manual Segmentation QA]] (Dave Welch, Hans Johnson)<br />
*[[2014_Summer_Project_Week:UpdateBRAINSTools | Update BRAINSTools (BRAINSFit and DWIConvert) in Slicer]] (Hans Johnson, Dave Welch, Kent Williams, JC, Brad)<br />
*[[2014_Summer_Prioject_Week:AgatstonScoring | Cardiac Agatston Scoring Extension]] (Jessica Forbes, Hans Johnson)<br />
<br />
==TBI==<br />
*[[2014_Summer_Project_Week:TBI_Segmentation| Interactive segmentation for traumatic brain injury ]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)<br />
<br />
==Stroke==<br />
*[[2014_Summer_Project_Week:Stroke-ImagingGenetics | Stroke Imaging Genetics]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)<br />
*[[2014_Summer_Project_Week:Stroke-SuperResolution | Stroke Super Resolution]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)<br />
<br />
==Cardiac==<br />
*[[2014_Summer_Project_Week:Cardiac-Congenital | MRI segmentation for congenital heart disease]] (Danielle Pace, Adrian Dalca, Polina Golland)<br />
<br />
==Chronic Obstructive Pulmonary Disease, Lung, Chest ==<br />
<br />
*[[2014_Summer_Project_Week: Pectoralis muscle segmentation| Pectoralis muscle segmentation]] (Rola Harmouche, James Ross, Raul San Jose)<br />
*[[2014_Summer_Project_Week:Image_Registration_with_Sliding_Motion_Constraints | Image Registration with Sliding Motion Constraints]] (Alexander Derksen, Kanglin Chen, Gregory Sharp)<br />
*[[2014_Summer_Project_Week:Multiscale_Non_Local_Means_filter_(NLM)_for_chest_CT_images | Multiscale Non Local Means filter (NLM) for chest CT images]] (Pietro Nardelli, Raul San Jose)<br />
<br />
==Head and Neck Cancer / Radiotherapy ==<br />
*[[2014_Summer_Project_Week:SlicerRT scalarbar vtk6 migration| ScalarBar vtk6 migration]] (Kevin Wang, Nicole)<br />
*[[2014_Summer_Project_Week:Upload_HN_data| Upload H&N data]] (Greg Sharp, Paolo Zaffino)<br />
*[[2014_Summer_Project_Week:DIR_stop_and_restart| DIR stop and restart]] (Paolo Zaffino, Greg Sharp, Steve Pieper)<br />
*[[2014_Summer_Project_Week:Proton_pencil_beam| Proton pencil beam dose calculation]] (Maxime Desplanques, Kevin Wang, Greg Sharp)<br />
<br />
==[http://qiicr.org QIICR]==<br />
* [[2014_Summer_Project_Week: RWV mapping support|Real world value mapping support]] (Ethan, Andrey, Andras, Steve, Jim)<br />
* [[2014_Summer_Project_Week: CLI Derived DICOM Data| Proper formatting of DICOM Derived Data from CLI]] (Steve, Andrey, Jim, {Michael and David remotely})<br />
* [[2014_Summer_Project_Week: DICOM SEG conversion to support archival of QIN Grand challenges results|DICOM SEG conversion to support archival of QIN Grand challenges results]] (Jayashree, Andrey, Steve, {David remotely})<br />
* [[2014_Summer_Project_Week: ColorBar support|Color Bar Support for Slice Views]] (Alireza, Andrey, Steve, Kevin)<br />
* [[2014_Summer_Project_Week: Slicer DICOM|Slicer DICOM Improvements]] (Alireza, Andrey, Steve, Ron)<br />
<br />
==Feature Extraction==<br />
*[[2014_Summer_Project_Week:Tumor_DCE-MRI_Segmentation | Breast Tumor Segmentation]] (Vivek Narayan, Jay Jagadeesan)<br />
*[[2014_Summer_Project_Week:Tumor_Heterogeneity_Analysis | Breast Tumor Heterogeneity Analysis]] (Vivek Narayan, Jay Jagadeesan)<br />
*[[2014_Summer_Project_Week: Quantitative image feature extraction | Quantitative image feature extraction in Non-Small Cell Lung Cancer]] (Hugo Aerts)<br />
*[[2014_Summer_Project_Week:Invariant_Feature_Extraction_Slicer | Invariant Feature Methods in Slicer]] (Matthew Toews, Nicole Aucoin, Hans Johnson, Sandy Wells)<br />
<br />
==Additional Brain Image Analysis==<br />
*[[2014_Summer_Project_Week:Slicer_Murin_Shape_Analysis | Shape Analysis for the developing murine skull]] (Murat Maga, Ryan Young, Seattle Chidren's Hospital).<br />
*[[2014_Summer_Project_Week:Slicer_LDDMM_Shape_Analysis | Slicer Interface to LDDMM shape anlaysis]] (Saurabh Jain, JHU; Steve Pieper, Isomics; Josh Cates, SCI, Utah; Hans Johnson, Iowa; Martin Styner, UNC)<br />
*[[2014_Summer_Project_Week:Atlas Selection | Atlas Selection]] (Kanglin Chen, Gregory Sharp)<br />
*[[2014_Summer_Project_Week:CAD_Toolbox_for_Neurological_Disorders | CAD Toolbox for Neurological Disorders]] (Sidong Liu, Siqi Liu, Fan Zhang, Yang Song, Weidong Cai, Sonia Pujol, Ron Kikinis)<br />
*[[2014_Summer_Project_Week:Longitudinal_patient_specific_DTI_analysis | Longitudinal patient-specific DTI analysis using Slicer for neonatal asphyxia]] (Anuja Sharma, SCI, Utah; Francois Budin, UNC; Martin Styner, UNC; Guido Gerig, SCI, Utah)<br />
*[[2014_Summer_Project_Week:Pipeline_Visualization | Pipeline Visualization]] (Ramesh, Adrian, Polina)<br />
<br />
==Slicer4 Extensions==<br />
<br />
*[[2014_Summer_Project_Week:Multidim Data| Multidimensional Data]] (Andras Lasso, Kevin Wang)<br />
*[[2014_Summer_Project_Week:DICOM-SRO import/export| DICOM-SRO import/export]] (Kevin Wang, Greg Sharp)<br />
*[[2014_Summer_Project_Week:DRAMMS_Slicer| Integrating DRAMMS deformable registration into Slicer]] (Yangming Ou, Steve Pieper, Andriy Fedorov, Tina Kapur, Christos Davatzikos, Ron Kikinis, Randy Gollub, Jayashree Kalpathy-Cramer)<br />
<br />
==TMJOA RO1 - Collaboration with NAMIC==<br />
*[[2014_Summer_Project_Week:TMJOA| TMJOA]] (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)<br />
<br />
==Infrastructure==<br />
* [[2014_Summer_Project_Week: Chronicle| Chronicle]] (Steve)<br />
* [[2014_Summer_Project_Week: Factory and Testing Process Post NA-MIC| Post NA-MIC Factory and Testing]] (Steve, Jc, Ron)<br />
* [[2014_Summer_Project_Week: Volume Registration|Volume Registration]] (Steve, Greg, Marcel, Jim)<br />
* [[2014_Summer_Project_Week:Markups | Markups]] (Nicole Aucoin)<br />
*[[2014_Summer_Project_Week:Pluggable Label Statistics |Pluggable Label Statistics]] (Andrey , Ethan, Steve, Brad, Jim)<br />
*[[2014_Summer_Project_Week:Subject_hierarchy_integration | Subject hierarchy integration]] (Csaba, Steve, Jc, Andras)<br />
*[[2014_Summer_Project_Week:Contours | Contours]] (Adam Rankin, Csaba, Andras, Steve, Jc)<br />
*[[2014_Summer_Project_Week:Parameter Node Serialization | Parameter Node Serialization]] (Kevin Wang, Steve, Jim, Jc, Matt, Nicole)<br />
*[[2014_Summer_Project_Week:Self-tests for non-linear transforms | Self-tests for non-linear transforms]] (Xining Du)<br />
*[[2014_Summer_Project_Week:Slicer Tutorial Updates | Slicer Tutorial Updates]] (Parth Amin, Farukh Kohistan, Sonia Pujol)<br />
<br />
== '''Logistics''' ==<br />
<br />
*'''Dates:''' June 23-27, 2014.<br />
*'''Location:''' [[MIT_Project_Week_Rooms| Stata Center / RLE MIT]]. <br />
*'''REGISTRATION:''' https://www.regonline.com/namic2014summerprojectweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.<br />
*'''Registration Fee:''' $300.<br />
*'''Hotel:''' Similar to previous years, no rooms have been blocked in a particular hotel.<br />
*'''Room sharing''': If interested, add your name to the list: [[2014_Summer_Project_Week/RoomSharing|here]]<br />
<br />
== '''Registrants''' ==<br />
<br />
Do not add your name to this list - it is maintained by the organizers based on your paid registration. ([https://www.regonline.com/namic2014summerprojectweek Please click here to register.])<br />
<br />
#Hugo Aerts, Dana Farber/Harvard, hugo_aerts@dfci.harvard.edu<br />
#Nassim Alikacem, Brigham & Women's Hospital, Nassim.Alikacem@gmail.com<br />
#Parth Amin, Brigham & Women's Hospital, aminp@wit.edu<br />
#Peter Anderson, retired, traneus@verizon.net<br />
#Nicole Aucoin, Brigham & Women's Hospital, nicole@bwh.harvard.edu<br />
#Eva Breininger, Brigham & Women's Hospital, ebreininger@partners.org<br />
#Francois Budin, NIRAL-UNC, fbudin@unc.edu<br />
#Saskia Camps, SPL, saskiacamps@gmail.com<br />
#Lucia Cevidanes, University of Michigan, luciacev@umich.edu<br />
#Laurent Chauvin, SPL, lchauvin@bwh.harvard.edu<br />
#Kanglin Chen, Fraunhofer MEVIS, kanglin.chen@mevis.fraunhofer.de<br />
#Adrian Dalca, MIT CSAIL, adalca@mit.edu<br />
#Alexander Derksen, Fraunhofer MEVIS, alexander.derksen@mevis.fraunhofer.de<br />
#Maxime Desplanques, MGH/Politecnico di Milano, maxime.desplanques@cnao.it<br />
#Fotis Drakopoulos, Old Dominion University, fdrakopo@gmail.com<br />
#Sneha Durgapal, Brigham & Women's Hospital, durgapalsneha@gmail.com<br />
#Andriy Fedorov, BWH, fedorov@bwh.harvard.edu<br />
#Jean-Christophe Fillion-Robin, Kitware, jchris.fillionr@kitware.com<br />
#James Fishbaugh, SCI Institute/University of Utah, jfishbaugh@gmail.com<br />
#Jessica Forbes, University of Iowa, jessica-forbes@uiowa.edu<br />
#Polina Golland, MIT CSAIL, polina@csail.mit.edu<br />
#Jeffrey Grethe, University of CA San Diego, jgrethe@ncmir.ucsd.edu<br />
#Rola Harmouche, Brigham & Women's Hospital, rolaharmouche@gmail.com<br />
#Nobuhiko Hata, Brigham & Women's Hospital, hata@bwh.harvard.edu<br />
#Jayender Jagadeesan, BWH/SPL, jayender@bwh.harvard.edu<br />
#Saurabh Jain, Johns Hopkins University, saurabh@cis.jhu.edu<br />
#Hans Johnson, University of Iowa, hans-johnson@uiowa.edu<br />
#Jayashree Kalpathy-Cramer, MGH, kalpathy@nmr.mgh.harvard.edu<br />
#Tina Kapur, BWH/Harvard Medical School, tkapur@bwh.harvard.edu<br />
#Ron Kikinis, HMS, kikinis@bwh.harvard.edu<br />
#Regina Kim, University of Iowa, eunyoung-kim@uiowa.edu<br />
#Franklin King, Queen's University, franklin.king@queensu.ca<br />
#Tassilo Klein, SPL/BWH, TJKlein@bwh.harvard.edu<br />
#Farukh Kohistani, BWH Radiology, kohistan@bc.edu<br />
#Ivan Kolesov, Stony Brook University, ivan.kolesov1@gmail.com<br />
#Robin Kouver, BWH/SPL, r.kouver@gmail.com<br />
#Andreas Lasso, PerkLab - Queen's University, lasso@queensu.ca<br />
#Yangming Li, University of Washington, ymli81@uw.edu<br />
#Sidong Liu, SPL/BWH, sliu@bwh.harvard.edu<br />
#Siqi Liu, University of Sydney, sliu4512@uni.sydney.edu.au<br />
#Bradley Lowekamp, National Institutes of Health, blowekamp@mail.nih.gov<br />
#Murat Maga, Seattle Children's Research Institute, maga@uw.edu<br />
#Katie Mastrogiacomo, SPL/BWH, kmast@bwh.harvard.edu<br />
#Alireza Mehrtash, SPL/BWH, mehrtash@bwh.harvard.edu<br />
#Dominik Meier, Brigham & Women's Hospital, meier@bwh.harvard.edu<br />
#Jim Miller, GE Research, millerjv@ge.com<br />
#Luiz Otavio Murta Junor, SPL/BWH, lmurta@partners.org<br />
#Vivek Narayan, NCIGT, narayan.vivek9@gmail.com<br />
#Pietro Nardelli, University College Cork, pietro@bwh.harvard.edu<br />
#Isaiah Norton, Brigham & Women's Hospital, isaiah.norton@gmail.com<br />
#Jorge Onieva, Brigham & Women's Hospital, jorgeonieva@gmail.com<br />
#Yangming Ou, MGH, yangming.ou@uphs.upenn.edu<br />
#Danielle Pace, MIT CSAIL, dfpace@mit.edu<br />
#Keryn Palmer, Brigham & Women's Hospital, kpalmer5@partners.org<br />
#Nirav Patel, WPI, napatel@wpi.edu<br />
#Tobias Penzkofer, SPL, pt@bwh.harvard.edu<br />
#Steve Pieper, Isomics Inc, pieper@isomics.com<br />
#Csaba Pinter, Queen's University, csaba.pinter@queensu.ca<br />
#Marcel Prastawa, GE Research, marcel.prastawa@ge.com<br />
#Somia Pujol, Harvard Medical School, spujol@bwh.harvard.edu<br />
#Adam Rankin, Queen's University, rankin@queensu.ca<br />
#Aymeric Reshef, Brigham & Women's Hospital, areshef@bwh.harvard.edu<br />
#Tammy Riklin Raviv, Ben-Gurion University, rrtammy@ee.bgu.ac.il<br />
#Rahul Sastry, BWH/SPL, rahul_sastry@hms.harvard.edu<br />
#Peter Savadjiev, Brigham & Women's Hospital, petersv@bwh.harvard.edu<br />
#Gregory Sharp, MGH, gcsharp@mgh.harvard.edu<br />
#Emylin Sousa, BWH/SPL, emylin.sousa@gmail.com<br />
#Ramesh Sridharan, MIT CSAIL, rameshvs@csail.mit.edu<br />
#Clare Tempany, Brigham & Women's Hospital, ctempany@bwh.harvard.edu<br />
#Matthew Toews, BWH/Harvard Medical School, mt@bwh.harvard.edu<br />
#Ethan Ulrich, University of Iowa, ethan-ulrich@uiowa.edu<br />
#Tamas Ungi, Queen's University, ungi@queensu.ca<br />
#Kevin Wang, Princess Margaret Cancer Centre, kevin.wang@rmp.uhn.ca<br />
#David Welch, University of Iowa, david-welch@uiowa.edu<br />
#William Wells, Brigham & Women's Hospital, sw@bwh.harvard.edu<br />
#Phillip White, BWH/Harvard Medical School, white@bwh.harvard.edu<br />
#Alex Yarmarkovich, ISOMICS Inc., alexy@bwh.harvard.edu<br />
#Ryan Young, Seattle Children's Research Institute, ryan.young@seattlechildrens.org<br />
#Paolo Zaffino, University Magna Graecia of Catanzaro, p.zaffino@unicz.it<br />
#Chenxi Zhang, Brigham & Women's Hospital, chenxizhang@fudan.edu.cn<br />
#Fan Zhang, University of Sydney, fzha8048@uni.sydney.edu.au</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=2014_Winter_Project_Week&diff=853252014 Winter Project Week2014-03-06T14:19:03Z<p>Dchamberlain: </p>
<hr />
<div> Back to [[Project Events]], [[AHM_2014]], [[Events]]<br />
<br />
__NOTOC__<br />
[[image:PW-SLC2014.png|300px]]<br />
<br />
<br />
'''Summary: The 18th PROJECT EVENT was held January 6-10, 2014 in Salt Lake City. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites (Brigham and Women's Hospital, University of Alabama, UNC Chapel Hill, MIT, UIowa, Queen University, Massachusetts General Hospital, Princess Margaret Hospital, University of Michigan, Johns Hopkins University, Stony Brook University, Shiga University of Medical Science, SCI Institute) and 4 companies (Kitware, Isomics, GE Research, AZE Technology). The agenda and projects are detailed below.'''<br />
<br />
<br />
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January. <br />
<br />
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.<br />
<br />
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
= Dates.Venue.Registration =<br />
<br />
Please [[AHM_2014#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.<br />
<br />
= [[AHM_2014#Agenda|'''AGENDA''']] and Project List=<br />
<br />
Please:<br />
* [[AHM_2014#Agenda|'''Click here for the agenda for AHM 2014 and Project Week''']].<br />
* [[#Projects|'''Click here to jump to Project list''']]<br />
<br />
=Background and Preparation=<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
<br />
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]<br />
<br />
=Projects=<br />
* [[2014_Project_Week_Template | Template for project pages]]<br />
<br />
==TBI==<br />
*[[2014_Project_Week:TBIatrophy|Multimodal neuroimaging for the quantification of brain atrophy at six months following severe traumatic brain injury]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)<br />
*[[2014_Project_Week:TBIdemyelination|Systematic evaluation of axonal demyelination subsequent to traumatic brain injury using structural T1- and T2-weighted magnetic resonance imaging]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)<br />
*[[2014_Project_Week:BrainAging|Mapping the effect of traumatic brain injury upon white matter connections in the human brain using 3D Slicer]] (Andrei Irimia, John D. Van Horn)<br />
*[[2014_Project_Week:LongitudinalDTI|Patient-specific longitudinal DTI analysis in traumatic brain injury]] (Anuja Sharma, Andrei Irimia, Bo Wang, John D. Van Horn, Martin Styner, Guido gerig)<br />
*[[2014_Project_Week:TBISegmentation|Testing the interactive segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)<br />
<br />
==Atrial Fibrillation==<br />
*[[2014_Project_Week:MRAFusionRegistration|DEMRI LA Segmentation via Image Fusion (MRA)]] (Salma, Josh, Alan)<br />
*[[2014_Project_Week:LAFibrosisVisualizationModule|LA Fibrosis / Scar Visualization]] (Salma, Josh, Alan)<br />
*[[2014_Project_Week:CARMADocumentation|CARMA Extension Documentation Project]] (Salma, Josh)<br />
*[[2014_Project_Week:GraphCutsLASegmentationModule|LA Segmentation module using multi-column Graph Cuts]] (Gopal, Salma, Josh, Rob, Ross)<br />
*[[2014_Project_Week:AblationSuccessRatePredictionUsingJointImageAndShapeAnalysis|Ablation Success Rate Prediction Using Joint Image And Shape Analysis]](Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)<br />
*[[2014_Project_Week:GrowCutLevelSetLA|Grow cut, level set integration for interactive LA segmentation]] ( Liangjia Zhu, Ivan Kolesov, Yi Gao, Allen Tannenbaum)<br />
<br />
==Huntington's Disease==<br />
*[[2014_Project_Week:DWIDispersion|DWI Dispersion & Compressed Sensing Conversions]] (Hans, CF, Peter Savadjiev, Kent, Dave Welch)<br />
*[[2014_Project_Week:Modules scripting|Slicer module scripting]] (Dave, Bradley Lowekamp)<br />
*[[2014_Project_Week:QA module| QA module]] (Dave)<br />
*[[2014_Project_Week:DWIConverter|DWIConverter]] (Hans, Kent)<br />
*[[2014_Project_Week:Slicer_Based_Surface_Template_Estimation|Slicer Based Surface Template Estimation]] (Saurabh Jain, Steve Pieper, Hans Johnson, Josh Cates)<br />
*[[2014_Project_Week:HD_4DShapes|4D shape analysis: application to HD ]] (James Fishbaugh,Hans Johnson, Guido Gerig)<br />
*[[2014_Project_Week:Shape_Registration_and_Regression|Shape registration and regression in Slicer4 ]] (James Fishbaugh,Hans Johnson, Guido Gerig)<br />
*[[2014_Project_Week:WMQLExtension|WMQL implementation as a Slicer extension]] (Lichen Liang, Peter Savadjiev, Lauren O'Donnell, Steve Pieper)<br />
<br />
==Head and Neck Cancer==<br />
*[[2014_Project_Week:DIR_Validation|DIR Validation: Landmark Mismatch Error]] (Nadya and Greg)<br />
*[[2014_Project_Week:Vector_Field|DIR Validation: Vector Field Analysis]] (Nadya and Greg)<br />
*[[2014_Project_Week:Hybrid_bspline|Hybrid B Spline]] (Nadya, Greg, Steve)<br />
*[[2014_Project_Week:CarreraSlice|Interactive Segmentation]] (Ivan, LiangJia, Nadya, Yi, Greg, Allen)<br />
<br />
==Slicer4 Extensions==<br />
*[[2014_Project_Week:ShapePopulationViewer|Surface Visualization - ShapePopulationViewer]] (Alexis Girault, Francois Budin, Beatriz Panaigua, Martin Styner)<br />
*[[2014_Project_Week:DTIAnalysisPipeline|DTI Analysis Pipeline as Slicer4 Extensions]] (Francois Budin, Martin Styner)<br />
<br />
==Cardiac==<br />
*[[2014_Project_Week:CardiacStemCellMonitoring|Monitoring engrafted stem cells in cardiac tissue with time series manganese enhanced MRI]] (Karl Diedrich)<br />
*[[2014_Project_Week:CardiacCongenitalSegmentation|Whole-heart segmentation of cardiac MR images in congenital heart defect cases]] (Danielle Pace, Polina Golland)<br />
<br />
==Stroke==<br />
<br />
*[[2014_Project_Week:Multi-Tissue_Stroke_Segmentation|Multi-Tissue Stroke Segmentation]] (Polina Binder, Ramesh Sridharan, Polina Golland)<br />
*[[2014_Project_Week:Processing_Pipelines|Processing Pipelines]] (Ramesh Sridharan, Polina Golland)<br />
<br />
==Brain Segmentation==<br />
*[[2014_Project_Week:MultiAtlas_MultiImage_Segmentation|Multi-Atlas based Multi-Image Segmentation]] (Minjeong Kim, Xiaofeng Liu, Jim Miller, Dinggang Shen)<br />
<br />
==Image-Guided Interventions==<br />
*[[2014_Project_Week:OpenIGTLink| OpenIGTLink Interface: New data types and structures]] (Junichi Tokuda, Andras Lasso, Steve Piper, ???)<br />
*[[2014_Project_Week:Ultrasound Visualization and Navigation in Neurosurgery|Ultrasound Visualization and Navigation in Neurosurgery]] (Matthew Toews, Alireza Mehrtash, Csaba Pinter, Andras Lasso, Steve Pieper, William M. Wells III)<br />
*[[2014_Project_Week:PercutaneousApproachAnalysis| Percutaneous Approach Analysis]] (Atsushi Yamada, Junichi Tokuda, Koichiro Murakami)<br />
*[[2014_Project_Week:EndoscopeConsole| Endoscope Console]] (Atsushi Yamada, Junichi Tokuda, Laurent Chauvin)<br />
*[[2014_Project_Week:Statistical Shape Model for robotic spine surgery| Statistical Shape Model for robotic spine surgery]] (Marine Clogenson, ???)<br />
*[[2014_Project_Week:ImmersiveVR| Immersive VR devices]] (Franklin King, Andras Lasso)<br />
<br />
==Radiation Therapy==<br />
*[[2014_Project_Week:DICOM_RT|DICOM RT Export]] (Greg Sharp, Kevin Wang)<br />
*[[2014_Project_Week:DICOM_SRO|DICOM Spatial Registration Export]] (Greg Sharp, Kevin Wang)<br />
*[[2014_Project_Week:Registration_Evaluation|Interactive Registration and Evaluation]] (Kevin Wang, Steve Pieper, Greg Sharp)<br />
*[[2014_Project_Week:External_Beam_Planning|External Beam Planning Visualization]] (Kevin Wang, Greg Sharp, Csaba Pinter)<br />
<br />
==TMJ-OA==<br />
* [[2014_Winter_Project_Week:Constrain Fiducial along Suface|Constrain Fiducial along Suface]] (Vinicius Boen, Nicole Aucoin, Beatriz Paniagua)<br />
* [[2014_Winter_Project_Week:Cropping Multiple Surfaces|Cropping multiple surfaces simultaneously]] (Alexander, Jc, Steve, Vinicius, Beatriz Paniagua)<br />
* [[2014_Winter_Project_Week:Color Code Tables|Color Coded Tables]] (Vinicius Boen, Beatriz Paniagua, Nicole Aucoin, Steve Pieper, Francois Budin)<br />
* [[2014_Winter_Project_Week:4DShape Analysis of mandibular changes|4DShape Analysis of mandibular changes]] (Vinicius Boen, James Fishbaugh, Guido Gerig)<br />
<br />
==Chronic Obstructive Pulmonary Disease ==<br />
* [[2014_Winter_Project_Week:CIP Core|Chest Imaging Platform (CIP) - Core Infrastructure]] (Raul San Jose, Rola Harmouche, Pietro Nardelli, James Ross)<br />
* [[2014_Winter_Project_Week:CIP Infrastructure Testing and SuperBuild|CIP Testing and SuperBuild]] (James Ross, Raul San Jose)<br />
* [[2014_Winter_Project_Week:Slicer CIP Slicer MRML| Slicer CIP- MRML consolidation]] (Pietro Nardelli, Rola Harmouche, James Ross, Raul San Jose)<br />
* [[2014_Winter_Project_Week:Slicer CIP Modules| Slicer CIP- Modules]] (Rola Harmouche, Pietro Nardelli, James Ross, Raul San Jose)<br />
<br />
==[http://qiicr.org QIICR]==<br />
<br />
*[[2014_Project_Week:4D_NIfTI_Multivolume|4D NIfTI Multivolume Support]] (Jayashree, Andrey, Jim, John)<br />
*[[2014_Project_Week:RT_FormatConversions|RT and ITK Format Conversions]] (Jayashree, Andras, Csaba. John)<br />
*[[2014_Project_Week:PkModeling_user_tool|User module for DCE modeling]] (Andrey, Jayashree, Jim, Steve, Ron)<br />
*[[2014_Project_Week:DICOM_enhanced_multiframe|DICOM enhanced multiframe object support]] (Andrey, Alireza, David Clunie, Jayashree, Steve, Reinhard, Jim, Rick Herrick)<br />
*[[2014_Project_Week:Quantitative_Index_Computation|Quantitative Index Computation]] (Ethan Ulrich, Reinhard Beichel, Nicole, Andrey, Jim)<br />
*[[2014_Project_Week:TCIA Browser Extension in Slicer|TCIA Browser Extension in Slicer]] (Alireza, Andrey, Steve, Ron)<br />
*[[2014_Project_Week:Slicer DICOM Module Interface Redesign|Slicer DICOM Module Interface Redesign]] (Alireza, Andrey, Steve, Ron, Rick Herrick)<br />
<br />
==Infrastructure==<br />
*[[2014_Project_Week:MultidimensionalDataSupport|Multidimensional data support]] (Andras Lasso, Andriy Fedorov, Steve Pieper, JC, Kevin Wang, Rick Herrick)<br />
*[[2014_Project_Week:MarkupsModule|Markups Module]] (Nicole Aucoin, Rick Herrick)<br />
* [[2014_Winter_Project_Week:Logging|Logging (standardization, logging to file)]] (Jc, Andras Lasso, Nicole Aucoin, Steve Pieper, Csaba Pinter, ???, Rick Herrick)<br />
*[[2014_Project_Week:CLI|CLI]] (Jim Miller, Matt McCormick, Nicole Aucoin, Steve Pieper, Jc)<br />
* [[2014_Winter_Project_Week:Steered Registration|Steered Registration (LandmarkRegistration module)]] (Steve, Greg, Kevin, Vinicius, Marcel)<br />
* [[2014_Winter_Project_Week:MRB Extension Dependencies|MRB Extension Dependencies]] (Steve, Jc, Jim, Nicole, Alex)<br />
* [[2014_Winter_Project_Week:SubjectHierarchy|Subject hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper, Jc, Jayashree, John, Alireza, Andrey)<br />
* [[2014_Winter_Project_Week:IntegrationOfContourObject|Integration of Contour object]] (Csaba Pinter, Andras Lasso, Steve Pieper, ???)<br />
* [[2014_Winter_Project_Week:NonlinearTransforms|Integration nonlinear transforms]] (Alex Yarmarkovich, Csaba Pinter, Andras Lasso, Steve Pieper, ???)<br />
* [[2014_Winter_Project_Week:ParameterSerialization | JSON Parameter Serialization]] (Matt McCormick, Steve Pieper, Jim Miller)<br />
* [[2014_Winter_Project_Week:XNATSlicerLink| 3DSlicer annotations in XNAT]] (Erwin Vast, Nicole Aucoin, Andrey Fedorov, Rick Herrick)<br />
* [[2014_Winter_Project_Week:PlanarImage|Planar Images]] (Franklin King, Csaba Pinter, Andras Lasso)</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=2014_Winter_Project_Week&diff=853242014 Winter Project Week2014-03-06T14:18:22Z<p>Dchamberlain: </p>
<hr />
<div> Back to [[Project Events]], [[AHM_2014]], [[Events]]<br />
<br />
__NOTOC__<br />
[[image:PW-SLC2014.png|300px]]<br />
<br />
<br />
'''Summary: The 18th PROJECT EVENT was held January 7-11, 2014 in Salt Lake City. It recorded 70 registered attendees, who worked on 66 projects. These attendees represented 13 academic sites (Brigham and Women's Hospital, University of Alabama, UNC Chapel Hill, MIT, UIowa, Queen University, Massachusetts General Hospital, Princess Margaret Hospital, University of Michigan, Johns Hopkins University, Stony Brook University, Shiga University of Medical Science, SCI Institute) and 4 companies (Kitware, Isomics, GE Research, AZE Technology). The agenda and projects are detailed below.'''<br />
<br />
<br />
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January. <br />
<br />
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.<br />
<br />
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
= Dates.Venue.Registration =<br />
<br />
Please [[AHM_2014#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.<br />
<br />
= [[AHM_2014#Agenda|'''AGENDA''']] and Project List=<br />
<br />
Please:<br />
* [[AHM_2014#Agenda|'''Click here for the agenda for AHM 2014 and Project Week''']].<br />
* [[#Projects|'''Click here to jump to Project list''']]<br />
<br />
=Background and Preparation=<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
<br />
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]<br />
<br />
=Projects=<br />
* [[2014_Project_Week_Template | Template for project pages]]<br />
<br />
==TBI==<br />
*[[2014_Project_Week:TBIatrophy|Multimodal neuroimaging for the quantification of brain atrophy at six months following severe traumatic brain injury]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)<br />
*[[2014_Project_Week:TBIdemyelination|Systematic evaluation of axonal demyelination subsequent to traumatic brain injury using structural T1- and T2-weighted magnetic resonance imaging]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)<br />
*[[2014_Project_Week:BrainAging|Mapping the effect of traumatic brain injury upon white matter connections in the human brain using 3D Slicer]] (Andrei Irimia, John D. Van Horn)<br />
*[[2014_Project_Week:LongitudinalDTI|Patient-specific longitudinal DTI analysis in traumatic brain injury]] (Anuja Sharma, Andrei Irimia, Bo Wang, John D. Van Horn, Martin Styner, Guido gerig)<br />
*[[2014_Project_Week:TBISegmentation|Testing the interactive segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)<br />
<br />
==Atrial Fibrillation==<br />
*[[2014_Project_Week:MRAFusionRegistration|DEMRI LA Segmentation via Image Fusion (MRA)]] (Salma, Josh, Alan)<br />
*[[2014_Project_Week:LAFibrosisVisualizationModule|LA Fibrosis / Scar Visualization]] (Salma, Josh, Alan)<br />
*[[2014_Project_Week:CARMADocumentation|CARMA Extension Documentation Project]] (Salma, Josh)<br />
*[[2014_Project_Week:GraphCutsLASegmentationModule|LA Segmentation module using multi-column Graph Cuts]] (Gopal, Salma, Josh, Rob, Ross)<br />
*[[2014_Project_Week:AblationSuccessRatePredictionUsingJointImageAndShapeAnalysis|Ablation Success Rate Prediction Using Joint Image And Shape Analysis]](Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)<br />
*[[2014_Project_Week:GrowCutLevelSetLA|Grow cut, level set integration for interactive LA segmentation]] ( Liangjia Zhu, Ivan Kolesov, Yi Gao, Allen Tannenbaum)<br />
<br />
==Huntington's Disease==<br />
*[[2014_Project_Week:DWIDispersion|DWI Dispersion & Compressed Sensing Conversions]] (Hans, CF, Peter Savadjiev, Kent, Dave Welch)<br />
*[[2014_Project_Week:Modules scripting|Slicer module scripting]] (Dave, Bradley Lowekamp)<br />
*[[2014_Project_Week:QA module| QA module]] (Dave)<br />
*[[2014_Project_Week:DWIConverter|DWIConverter]] (Hans, Kent)<br />
*[[2014_Project_Week:Slicer_Based_Surface_Template_Estimation|Slicer Based Surface Template Estimation]] (Saurabh Jain, Steve Pieper, Hans Johnson, Josh Cates)<br />
*[[2014_Project_Week:HD_4DShapes|4D shape analysis: application to HD ]] (James Fishbaugh,Hans Johnson, Guido Gerig)<br />
*[[2014_Project_Week:Shape_Registration_and_Regression|Shape registration and regression in Slicer4 ]] (James Fishbaugh,Hans Johnson, Guido Gerig)<br />
*[[2014_Project_Week:WMQLExtension|WMQL implementation as a Slicer extension]] (Lichen Liang, Peter Savadjiev, Lauren O'Donnell, Steve Pieper)<br />
<br />
==Head and Neck Cancer==<br />
*[[2014_Project_Week:DIR_Validation|DIR Validation: Landmark Mismatch Error]] (Nadya and Greg)<br />
*[[2014_Project_Week:Vector_Field|DIR Validation: Vector Field Analysis]] (Nadya and Greg)<br />
*[[2014_Project_Week:Hybrid_bspline|Hybrid B Spline]] (Nadya, Greg, Steve)<br />
*[[2014_Project_Week:CarreraSlice|Interactive Segmentation]] (Ivan, LiangJia, Nadya, Yi, Greg, Allen)<br />
<br />
==Slicer4 Extensions==<br />
*[[2014_Project_Week:ShapePopulationViewer|Surface Visualization - ShapePopulationViewer]] (Alexis Girault, Francois Budin, Beatriz Panaigua, Martin Styner)<br />
*[[2014_Project_Week:DTIAnalysisPipeline|DTI Analysis Pipeline as Slicer4 Extensions]] (Francois Budin, Martin Styner)<br />
<br />
==Cardiac==<br />
*[[2014_Project_Week:CardiacStemCellMonitoring|Monitoring engrafted stem cells in cardiac tissue with time series manganese enhanced MRI]] (Karl Diedrich)<br />
*[[2014_Project_Week:CardiacCongenitalSegmentation|Whole-heart segmentation of cardiac MR images in congenital heart defect cases]] (Danielle Pace, Polina Golland)<br />
<br />
==Stroke==<br />
<br />
*[[2014_Project_Week:Multi-Tissue_Stroke_Segmentation|Multi-Tissue Stroke Segmentation]] (Polina Binder, Ramesh Sridharan, Polina Golland)<br />
*[[2014_Project_Week:Processing_Pipelines|Processing Pipelines]] (Ramesh Sridharan, Polina Golland)<br />
<br />
==Brain Segmentation==<br />
*[[2014_Project_Week:MultiAtlas_MultiImage_Segmentation|Multi-Atlas based Multi-Image Segmentation]] (Minjeong Kim, Xiaofeng Liu, Jim Miller, Dinggang Shen)<br />
<br />
==Image-Guided Interventions==<br />
*[[2014_Project_Week:OpenIGTLink| OpenIGTLink Interface: New data types and structures]] (Junichi Tokuda, Andras Lasso, Steve Piper, ???)<br />
*[[2014_Project_Week:Ultrasound Visualization and Navigation in Neurosurgery|Ultrasound Visualization and Navigation in Neurosurgery]] (Matthew Toews, Alireza Mehrtash, Csaba Pinter, Andras Lasso, Steve Pieper, William M. Wells III)<br />
*[[2014_Project_Week:PercutaneousApproachAnalysis| Percutaneous Approach Analysis]] (Atsushi Yamada, Junichi Tokuda, Koichiro Murakami)<br />
*[[2014_Project_Week:EndoscopeConsole| Endoscope Console]] (Atsushi Yamada, Junichi Tokuda, Laurent Chauvin)<br />
*[[2014_Project_Week:Statistical Shape Model for robotic spine surgery| Statistical Shape Model for robotic spine surgery]] (Marine Clogenson, ???)<br />
*[[2014_Project_Week:ImmersiveVR| Immersive VR devices]] (Franklin King, Andras Lasso)<br />
<br />
==Radiation Therapy==<br />
*[[2014_Project_Week:DICOM_RT|DICOM RT Export]] (Greg Sharp, Kevin Wang)<br />
*[[2014_Project_Week:DICOM_SRO|DICOM Spatial Registration Export]] (Greg Sharp, Kevin Wang)<br />
*[[2014_Project_Week:Registration_Evaluation|Interactive Registration and Evaluation]] (Kevin Wang, Steve Pieper, Greg Sharp)<br />
*[[2014_Project_Week:External_Beam_Planning|External Beam Planning Visualization]] (Kevin Wang, Greg Sharp, Csaba Pinter)<br />
<br />
==TMJ-OA==<br />
* [[2014_Winter_Project_Week:Constrain Fiducial along Suface|Constrain Fiducial along Suface]] (Vinicius Boen, Nicole Aucoin, Beatriz Paniagua)<br />
* [[2014_Winter_Project_Week:Cropping Multiple Surfaces|Cropping multiple surfaces simultaneously]] (Alexander, Jc, Steve, Vinicius, Beatriz Paniagua)<br />
* [[2014_Winter_Project_Week:Color Code Tables|Color Coded Tables]] (Vinicius Boen, Beatriz Paniagua, Nicole Aucoin, Steve Pieper, Francois Budin)<br />
* [[2014_Winter_Project_Week:4DShape Analysis of mandibular changes|4DShape Analysis of mandibular changes]] (Vinicius Boen, James Fishbaugh, Guido Gerig)<br />
<br />
==Chronic Obstructive Pulmonary Disease ==<br />
* [[2014_Winter_Project_Week:CIP Core|Chest Imaging Platform (CIP) - Core Infrastructure]] (Raul San Jose, Rola Harmouche, Pietro Nardelli, James Ross)<br />
* [[2014_Winter_Project_Week:CIP Infrastructure Testing and SuperBuild|CIP Testing and SuperBuild]] (James Ross, Raul San Jose)<br />
* [[2014_Winter_Project_Week:Slicer CIP Slicer MRML| Slicer CIP- MRML consolidation]] (Pietro Nardelli, Rola Harmouche, James Ross, Raul San Jose)<br />
* [[2014_Winter_Project_Week:Slicer CIP Modules| Slicer CIP- Modules]] (Rola Harmouche, Pietro Nardelli, James Ross, Raul San Jose)<br />
<br />
==[http://qiicr.org QIICR]==<br />
<br />
*[[2014_Project_Week:4D_NIfTI_Multivolume|4D NIfTI Multivolume Support]] (Jayashree, Andrey, Jim, John)<br />
*[[2014_Project_Week:RT_FormatConversions|RT and ITK Format Conversions]] (Jayashree, Andras, Csaba. John)<br />
*[[2014_Project_Week:PkModeling_user_tool|User module for DCE modeling]] (Andrey, Jayashree, Jim, Steve, Ron)<br />
*[[2014_Project_Week:DICOM_enhanced_multiframe|DICOM enhanced multiframe object support]] (Andrey, Alireza, David Clunie, Jayashree, Steve, Reinhard, Jim, Rick Herrick)<br />
*[[2014_Project_Week:Quantitative_Index_Computation|Quantitative Index Computation]] (Ethan Ulrich, Reinhard Beichel, Nicole, Andrey, Jim)<br />
*[[2014_Project_Week:TCIA Browser Extension in Slicer|TCIA Browser Extension in Slicer]] (Alireza, Andrey, Steve, Ron)<br />
*[[2014_Project_Week:Slicer DICOM Module Interface Redesign|Slicer DICOM Module Interface Redesign]] (Alireza, Andrey, Steve, Ron, Rick Herrick)<br />
<br />
==Infrastructure==<br />
*[[2014_Project_Week:MultidimensionalDataSupport|Multidimensional data support]] (Andras Lasso, Andriy Fedorov, Steve Pieper, JC, Kevin Wang, Rick Herrick)<br />
*[[2014_Project_Week:MarkupsModule|Markups Module]] (Nicole Aucoin, Rick Herrick)<br />
* [[2014_Winter_Project_Week:Logging|Logging (standardization, logging to file)]] (Jc, Andras Lasso, Nicole Aucoin, Steve Pieper, Csaba Pinter, ???, Rick Herrick)<br />
*[[2014_Project_Week:CLI|CLI]] (Jim Miller, Matt McCormick, Nicole Aucoin, Steve Pieper, Jc)<br />
* [[2014_Winter_Project_Week:Steered Registration|Steered Registration (LandmarkRegistration module)]] (Steve, Greg, Kevin, Vinicius, Marcel)<br />
* [[2014_Winter_Project_Week:MRB Extension Dependencies|MRB Extension Dependencies]] (Steve, Jc, Jim, Nicole, Alex)<br />
* [[2014_Winter_Project_Week:SubjectHierarchy|Subject hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper, Jc, Jayashree, John, Alireza, Andrey)<br />
* [[2014_Winter_Project_Week:IntegrationOfContourObject|Integration of Contour object]] (Csaba Pinter, Andras Lasso, Steve Pieper, ???)<br />
* [[2014_Winter_Project_Week:NonlinearTransforms|Integration nonlinear transforms]] (Alex Yarmarkovich, Csaba Pinter, Andras Lasso, Steve Pieper, ???)<br />
* [[2014_Winter_Project_Week:ParameterSerialization | JSON Parameter Serialization]] (Matt McCormick, Steve Pieper, Jim Miller)<br />
* [[2014_Winter_Project_Week:XNATSlicerLink| 3DSlicer annotations in XNAT]] (Erwin Vast, Nicole Aucoin, Andrey Fedorov, Rick Herrick)<br />
* [[2014_Winter_Project_Week:PlanarImage|Planar Images]] (Franklin King, Csaba Pinter, Andras Lasso)</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=2014_Winter_Project_Week&diff=853232014 Winter Project Week2014-03-06T14:17:10Z<p>Dchamberlain: </p>
<hr />
<div> Back to [[Project Events]], [[AHM_2014]], [[Events]]<br />
<br />
__NOTOC__<br />
[[image:PW-SLC2014.png|300px]]<br />
<br />
<br />
'''Summary: The 18th PROJECT EVENT was held January 7-11, 2014 in Salt Lake City. It recorded 70 registered attendees, who worked on 54 projects. These attendees represented 13 academic sites (Brigham and Women's Hospital, University of Alabama, UNC Chapel Hill, MIT, UIowa, Queen University, Massachusetts General Hospital, Princess Margaret Hospital, University of Michigan, Johns Hopkins University, Stony Brook University, Shiga University of Medical Science, SCI Institute) and 4 companies (Kitware, Isomics, GE Research, AZE Technology). The agenda and projects are detailed below.'''<br />
<br />
<br />
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January. <br />
<br />
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.<br />
<br />
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
= Dates.Venue.Registration =<br />
<br />
Please [[AHM_2014#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.<br />
<br />
= [[AHM_2014#Agenda|'''AGENDA''']] and Project List=<br />
<br />
Please:<br />
* [[AHM_2014#Agenda|'''Click here for the agenda for AHM 2014 and Project Week''']].<br />
* [[#Projects|'''Click here to jump to Project list''']]<br />
<br />
=Background and Preparation=<br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
<br />
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]<br />
<br />
=Projects=<br />
* [[2014_Project_Week_Template | Template for project pages]]<br />
<br />
==TBI==<br />
*[[2014_Project_Week:TBIatrophy|Multimodal neuroimaging for the quantification of brain atrophy at six months following severe traumatic brain injury]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)<br />
*[[2014_Project_Week:TBIdemyelination|Systematic evaluation of axonal demyelination subsequent to traumatic brain injury using structural T1- and T2-weighted magnetic resonance imaging]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)<br />
*[[2014_Project_Week:BrainAging|Mapping the effect of traumatic brain injury upon white matter connections in the human brain using 3D Slicer]] (Andrei Irimia, John D. Van Horn)<br />
*[[2014_Project_Week:LongitudinalDTI|Patient-specific longitudinal DTI analysis in traumatic brain injury]] (Anuja Sharma, Andrei Irimia, Bo Wang, John D. Van Horn, Martin Styner, Guido gerig)<br />
*[[2014_Project_Week:TBISegmentation|Testing the interactive segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)<br />
<br />
==Atrial Fibrillation==<br />
*[[2014_Project_Week:MRAFusionRegistration|DEMRI LA Segmentation via Image Fusion (MRA)]] (Salma, Josh, Alan)<br />
*[[2014_Project_Week:LAFibrosisVisualizationModule|LA Fibrosis / Scar Visualization]] (Salma, Josh, Alan)<br />
*[[2014_Project_Week:CARMADocumentation|CARMA Extension Documentation Project]] (Salma, Josh)<br />
*[[2014_Project_Week:GraphCutsLASegmentationModule|LA Segmentation module using multi-column Graph Cuts]] (Gopal, Salma, Josh, Rob, Ross)<br />
*[[2014_Project_Week:AblationSuccessRatePredictionUsingJointImageAndShapeAnalysis|Ablation Success Rate Prediction Using Joint Image And Shape Analysis]](Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)<br />
*[[2014_Project_Week:GrowCutLevelSetLA|Grow cut, level set integration for interactive LA segmentation]] ( Liangjia Zhu, Ivan Kolesov, Yi Gao, Allen Tannenbaum)<br />
<br />
==Huntington's Disease==<br />
*[[2014_Project_Week:DWIDispersion|DWI Dispersion & Compressed Sensing Conversions]] (Hans, CF, Peter Savadjiev, Kent, Dave Welch)<br />
*[[2014_Project_Week:Modules scripting|Slicer module scripting]] (Dave, Bradley Lowekamp)<br />
*[[2014_Project_Week:QA module| QA module]] (Dave)<br />
*[[2014_Project_Week:DWIConverter|DWIConverter]] (Hans, Kent)<br />
*[[2014_Project_Week:Slicer_Based_Surface_Template_Estimation|Slicer Based Surface Template Estimation]] (Saurabh Jain, Steve Pieper, Hans Johnson, Josh Cates)<br />
*[[2014_Project_Week:HD_4DShapes|4D shape analysis: application to HD ]] (James Fishbaugh,Hans Johnson, Guido Gerig)<br />
*[[2014_Project_Week:Shape_Registration_and_Regression|Shape registration and regression in Slicer4 ]] (James Fishbaugh,Hans Johnson, Guido Gerig)<br />
*[[2014_Project_Week:WMQLExtension|WMQL implementation as a Slicer extension]] (Lichen Liang, Peter Savadjiev, Lauren O'Donnell, Steve Pieper)<br />
<br />
==Head and Neck Cancer==<br />
*[[2014_Project_Week:DIR_Validation|DIR Validation: Landmark Mismatch Error]] (Nadya and Greg)<br />
*[[2014_Project_Week:Vector_Field|DIR Validation: Vector Field Analysis]] (Nadya and Greg)<br />
*[[2014_Project_Week:Hybrid_bspline|Hybrid B Spline]] (Nadya, Greg, Steve)<br />
*[[2014_Project_Week:CarreraSlice|Interactive Segmentation]] (Ivan, LiangJia, Nadya, Yi, Greg, Allen)<br />
<br />
==Slicer4 Extensions==<br />
*[[2014_Project_Week:ShapePopulationViewer|Surface Visualization - ShapePopulationViewer]] (Alexis Girault, Francois Budin, Beatriz Panaigua, Martin Styner)<br />
*[[2014_Project_Week:DTIAnalysisPipeline|DTI Analysis Pipeline as Slicer4 Extensions]] (Francois Budin, Martin Styner)<br />
<br />
==Cardiac==<br />
*[[2014_Project_Week:CardiacStemCellMonitoring|Monitoring engrafted stem cells in cardiac tissue with time series manganese enhanced MRI]] (Karl Diedrich)<br />
*[[2014_Project_Week:CardiacCongenitalSegmentation|Whole-heart segmentation of cardiac MR images in congenital heart defect cases]] (Danielle Pace, Polina Golland)<br />
<br />
==Stroke==<br />
<br />
*[[2014_Project_Week:Multi-Tissue_Stroke_Segmentation|Multi-Tissue Stroke Segmentation]] (Polina Binder, Ramesh Sridharan, Polina Golland)<br />
*[[2014_Project_Week:Processing_Pipelines|Processing Pipelines]] (Ramesh Sridharan, Polina Golland)<br />
<br />
==Brain Segmentation==<br />
*[[2014_Project_Week:MultiAtlas_MultiImage_Segmentation|Multi-Atlas based Multi-Image Segmentation]] (Minjeong Kim, Xiaofeng Liu, Jim Miller, Dinggang Shen)<br />
<br />
==Image-Guided Interventions==<br />
*[[2014_Project_Week:OpenIGTLink| OpenIGTLink Interface: New data types and structures]] (Junichi Tokuda, Andras Lasso, Steve Piper, ???)<br />
*[[2014_Project_Week:Ultrasound Visualization and Navigation in Neurosurgery|Ultrasound Visualization and Navigation in Neurosurgery]] (Matthew Toews, Alireza Mehrtash, Csaba Pinter, Andras Lasso, Steve Pieper, William M. Wells III)<br />
*[[2014_Project_Week:PercutaneousApproachAnalysis| Percutaneous Approach Analysis]] (Atsushi Yamada, Junichi Tokuda, Koichiro Murakami)<br />
*[[2014_Project_Week:EndoscopeConsole| Endoscope Console]] (Atsushi Yamada, Junichi Tokuda, Laurent Chauvin)<br />
*[[2014_Project_Week:Statistical Shape Model for robotic spine surgery| Statistical Shape Model for robotic spine surgery]] (Marine Clogenson, ???)<br />
*[[2014_Project_Week:ImmersiveVR| Immersive VR devices]] (Franklin King, Andras Lasso)<br />
<br />
==Radiation Therapy==<br />
*[[2014_Project_Week:DICOM_RT|DICOM RT Export]] (Greg Sharp, Kevin Wang)<br />
*[[2014_Project_Week:DICOM_SRO|DICOM Spatial Registration Export]] (Greg Sharp, Kevin Wang)<br />
*[[2014_Project_Week:Registration_Evaluation|Interactive Registration and Evaluation]] (Kevin Wang, Steve Pieper, Greg Sharp)<br />
*[[2014_Project_Week:External_Beam_Planning|External Beam Planning Visualization]] (Kevin Wang, Greg Sharp, Csaba Pinter)<br />
<br />
==TMJ-OA==<br />
* [[2014_Winter_Project_Week:Constrain Fiducial along Suface|Constrain Fiducial along Suface]] (Vinicius Boen, Nicole Aucoin, Beatriz Paniagua)<br />
* [[2014_Winter_Project_Week:Cropping Multiple Surfaces|Cropping multiple surfaces simultaneously]] (Alexander, Jc, Steve, Vinicius, Beatriz Paniagua)<br />
* [[2014_Winter_Project_Week:Color Code Tables|Color Coded Tables]] (Vinicius Boen, Beatriz Paniagua, Nicole Aucoin, Steve Pieper, Francois Budin)<br />
* [[2014_Winter_Project_Week:4DShape Analysis of mandibular changes|4DShape Analysis of mandibular changes]] (Vinicius Boen, James Fishbaugh, Guido Gerig)<br />
<br />
==Chronic Obstructive Pulmonary Disease ==<br />
* [[2014_Winter_Project_Week:CIP Core|Chest Imaging Platform (CIP) - Core Infrastructure]] (Raul San Jose, Rola Harmouche, Pietro Nardelli, James Ross)<br />
* [[2014_Winter_Project_Week:CIP Infrastructure Testing and SuperBuild|CIP Testing and SuperBuild]] (James Ross, Raul San Jose)<br />
* [[2014_Winter_Project_Week:Slicer CIP Slicer MRML| Slicer CIP- MRML consolidation]] (Pietro Nardelli, Rola Harmouche, James Ross, Raul San Jose)<br />
* [[2014_Winter_Project_Week:Slicer CIP Modules| Slicer CIP- Modules]] (Rola Harmouche, Pietro Nardelli, James Ross, Raul San Jose)<br />
<br />
==[http://qiicr.org QIICR]==<br />
<br />
*[[2014_Project_Week:4D_NIfTI_Multivolume|4D NIfTI Multivolume Support]] (Jayashree, Andrey, Jim, John)<br />
*[[2014_Project_Week:RT_FormatConversions|RT and ITK Format Conversions]] (Jayashree, Andras, Csaba. John)<br />
*[[2014_Project_Week:PkModeling_user_tool|User module for DCE modeling]] (Andrey, Jayashree, Jim, Steve, Ron)<br />
*[[2014_Project_Week:DICOM_enhanced_multiframe|DICOM enhanced multiframe object support]] (Andrey, Alireza, David Clunie, Jayashree, Steve, Reinhard, Jim, Rick Herrick)<br />
*[[2014_Project_Week:Quantitative_Index_Computation|Quantitative Index Computation]] (Ethan Ulrich, Reinhard Beichel, Nicole, Andrey, Jim)<br />
*[[2014_Project_Week:TCIA Browser Extension in Slicer|TCIA Browser Extension in Slicer]] (Alireza, Andrey, Steve, Ron)<br />
*[[2014_Project_Week:Slicer DICOM Module Interface Redesign|Slicer DICOM Module Interface Redesign]] (Alireza, Andrey, Steve, Ron, Rick Herrick)<br />
<br />
==Infrastructure==<br />
*[[2014_Project_Week:MultidimensionalDataSupport|Multidimensional data support]] (Andras Lasso, Andriy Fedorov, Steve Pieper, JC, Kevin Wang, Rick Herrick)<br />
*[[2014_Project_Week:MarkupsModule|Markups Module]] (Nicole Aucoin, Rick Herrick)<br />
* [[2014_Winter_Project_Week:Logging|Logging (standardization, logging to file)]] (Jc, Andras Lasso, Nicole Aucoin, Steve Pieper, Csaba Pinter, ???, Rick Herrick)<br />
*[[2014_Project_Week:CLI|CLI]] (Jim Miller, Matt McCormick, Nicole Aucoin, Steve Pieper, Jc)<br />
* [[2014_Winter_Project_Week:Steered Registration|Steered Registration (LandmarkRegistration module)]] (Steve, Greg, Kevin, Vinicius, Marcel)<br />
* [[2014_Winter_Project_Week:MRB Extension Dependencies|MRB Extension Dependencies]] (Steve, Jc, Jim, Nicole, Alex)<br />
* [[2014_Winter_Project_Week:SubjectHierarchy|Subject hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper, Jc, Jayashree, John, Alireza, Andrey)<br />
* [[2014_Winter_Project_Week:IntegrationOfContourObject|Integration of Contour object]] (Csaba Pinter, Andras Lasso, Steve Pieper, ???)<br />
* [[2014_Winter_Project_Week:NonlinearTransforms|Integration nonlinear transforms]] (Alex Yarmarkovich, Csaba Pinter, Andras Lasso, Steve Pieper, ???)<br />
* [[2014_Winter_Project_Week:ParameterSerialization | JSON Parameter Serialization]] (Matt McCormick, Steve Pieper, Jim Miller)<br />
* [[2014_Winter_Project_Week:XNATSlicerLink| 3DSlicer annotations in XNAT]] (Erwin Vast, Nicole Aucoin, Andrey Fedorov, Rick Herrick)<br />
* [[2014_Winter_Project_Week:PlanarImage|Planar Images]] (Franklin King, Csaba Pinter, Andras Lasso)</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83694Second Medical Image Registration Retreat, Puerto Rico2013-11-12T13:54:54Z<p>Dchamberlain: /* Registered Attendees */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
<br />
<gallery><br />
image:NAMIC_logo.png<br />
image:Nac.png<br />
image:NCIGTlogo.gif<br />
</gallery><br />
<br />
<br />
=Logistics =<br />
<br />
Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com<br />
<br />
<br />
Registration: To register for the meeting, click [http://secondmedicalimageregistrationretreat.eventbrite.com here].<br />
<br />
This event will bring together registration algorithm researchers from NAC, NA-MIC, NCIGT and close associates. The agenda is to discuss some of the interactive methods for image registration - from both algorithmic and engineering perspectives. <br />
<br />
=Topics=<br />
<br />
=Agenda=<br />
<br />
==Tuesday==<br />
*6pm: Reception with hors de'oeuvres at La Verandah Terrace of Hotel.<br />
<br />
==Wednesday==<br />
*8:am Sandy Wells<br />
<br />
==Thursday==<br />
8:am start<br />
<br />
<br />
=Registered Attendees=<br />
This is a list of the registered attendees. If you need to register, please click on [http://secondmedicalimageregistrationretreat.eventbrite.com this link.]<br />
<br />
#Ron Kikinis<br />
#Tina Kapur<br />
#Steve Pieper<br />
#Nils Papenberg<br />
#Sandy Wells<br />
<br />
Will Register:<br />
<br />
#Jay Jagadeesan<br />
#Raul San Jose Estepar<br />
#Marc Niethammer</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83487Second Medical Image Registration Retreat, Puerto Rico2013-10-22T12:32:48Z<p>Dchamberlain: </p>
<hr />
<div> Back to [[Events]]<br />
<br />
<br />
<gallery><br />
image:NAMIC_logo.png<br />
image:Nac.png<br />
image:NCIGTlogo.gif<br />
</gallery><br />
<br />
<br />
=Logistics =<br />
<br />
Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com<br />
<br />
<br />
Registration: To register for the meeting, click [http://secondmedicalimageregistrationretreat.eventbrite.com here].<br />
<br />
This event will bring together registration algorithm researchers from NAC, NA-MIC, NCIGT and close associates. The agenda is to discuss some of the interactive methods for image registration - from both algorithmic and engineering perspectives. <br />
<br />
=Topics=<br />
<br />
=Agenda=<br />
<br />
==Tuesday==<br />
*6pm: Reception with hors de'oeuvres at La Verandah Terrace of Hotel.<br />
<br />
==Wednesday==<br />
8:am start<br />
<br />
==Thursday==<br />
8:am start<br />
<br />
<br />
=Registered Attendees=<br />
This is a list of the registered attendees. If you need to register, please click on [http://secondmedicalimageregistrationretreat.eventbrite.com this link.]<br />
<br />
#Ron Kikinis<br />
#Tina Kapur<br />
#Steve Pieper<br />
#Nils Papenberg<br />
#Torsten Rohlfing<br />
#Sandy Wells<br />
<br />
Expected to Register Attendees:<br />
<br />
<br />
#Allen Tannenbaum<br />
#Jay Jagadeesan<br />
#Raul San Jose Estepar<br />
#Marc Niethammer</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83449Second Medical Image Registration Retreat, Puerto Rico2013-10-17T17:02:21Z<p>Dchamberlain: /* Registered Attendees */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
<br />
<gallery><br />
image:NAMIC_logo.png<br />
image:Nac.png<br />
image:NCIGTlogo.gif<br />
</gallery><br />
<br />
<br />
=Logistics =<br />
<br />
Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com<br />
<br />
<br />
Registration: To register for the meeting, click [http://secondmedicalimageregistrationretreat.eventbrite.com here].<br />
<br />
This event will bring together registration algorithm researchers from NAC, NA-MIC, NCIGT and close associates. The agenda is to discuss some of the interactive methods for image registration - from both algorithmic and engineering perspectives. <br />
<br />
=Topics=<br />
<br />
=Agenda=<br />
<br />
==Tuesday==<br />
*6pm: Reception with hors de'oeuvres at La Verandah Terrace of Hotel.<br />
<br />
==Wednesday==<br />
8:am start<br />
<br />
==Thursday==<br />
8:am start<br />
<br />
<br />
=Registered Attendees=<br />
This is a list of the registered attendees. If you need to register, please click on [http://secondmedicalimageregistrationretreat.eventbrite.com this link.]<br />
<br />
#Ron Kikinis<br />
#Tina Kapur<br />
#Steve Pieper<br />
#Nils Papenberg<br />
#Torsten Rohlfing<br />
<br />
Expected to Register Attendees:<br />
<br />
#Sandy Wells<br />
#Allen Tannenbaum<br />
#Jay Jagadeesan<br />
#Raul San Jose Estepar<br />
#Marc Niethammer</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83448Second Medical Image Registration Retreat, Puerto Rico2013-10-17T17:01:24Z<p>Dchamberlain: /* Registered Attendees */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
<br />
<gallery><br />
image:NAMIC_logo.png<br />
image:Nac.png<br />
image:NCIGTlogo.gif<br />
</gallery><br />
<br />
<br />
=Logistics =<br />
<br />
Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com<br />
<br />
<br />
Registration: To register for the meeting, click [http://secondmedicalimageregistrationretreat.eventbrite.com here].<br />
<br />
This event will bring together registration algorithm researchers from NAC, NA-MIC, NCIGT and close associates. The agenda is to discuss some of the interactive methods for image registration - from both algorithmic and engineering perspectives. <br />
<br />
=Topics=<br />
<br />
=Agenda=<br />
<br />
==Tuesday==<br />
*6pm: Reception with hors de'oeuvres at La Verandah Terrace of Hotel.<br />
<br />
==Wednesday==<br />
8:am start<br />
<br />
==Thursday==<br />
8:am start<br />
<br />
<br />
=Registered Attendees=<br />
This is a list of the registered attendees. If you need to register, please click on [http://secondmedicalimageregistrationretreat.eventbrite.com this link.]<br />
<br />
#Ron Kikinis<br />
#Tina Kapur<br />
#Steve Pieper<br />
#Nils Papenberg<br />
<br />
Expected to Register Attendees:<br />
<br />
#Sandy Wells<br />
#Allen Tannenbaum<br />
#Jay Jagadeesan<br />
#Raul San Jose Estepar<br />
#Marc Niethammer</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83115Second Medical Image Registration Retreat, Puerto Rico2013-08-15T14:24:14Z<p>Dchamberlain: /* Registered Attendees */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
<br />
<gallery><br />
image:NAMIC_logo.png<br />
image:Nac.png<br />
image:NCIGTlogo.gif<br />
</gallery><br />
<br />
<br />
=Logistics =<br />
<br />
Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com<br />
<br />
<br />
Registration: To register for the meeting, click [http://secondmedicalimageregistrationretreat.eventbrite.com here].<br />
<br />
This event will bring together registration algorithm researchers from NAC, NA-MIC, NCIGT and close associates. The agenda is to discuss some of the interactive methods for image registration - from both algorithmic and engineering perspectives. <br />
<br />
=Topics=<br />
<br />
=Agenda=<br />
<br />
==Tuesday==<br />
*6pm: Reception with hors de'oeuvres at La Verandah Terrace of Hotel.<br />
<br />
==Wednesday==<br />
8:am start<br />
<br />
==Thursday==<br />
8:am start<br />
<br />
<br />
=Registered Attendees=<br />
This is a list of the registered attendees. If you need to register, please click on [http://secondmedicalimageregistrationretreat.eventbrite.com this link.]<br />
<br />
#Ron Kikinis<br />
#Tina Kapur<br />
#Steve Pieper<br />
<br />
Expected to Register Attendees:<br />
<br />
#Sandy Wells<br />
#Allen Tannenbaum<br />
#Jay Jagadeesan<br />
#Torsten Rohlfing<br />
#Raul San Jose Estepar<br />
#Marc Niethammer</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83090Second Medical Image Registration Retreat, Puerto Rico2013-08-08T17:47:05Z<p>Dchamberlain: /* Registered Attendees */</p>
<hr />
<div> Back to [[Events]]<br />
<br />
<br />
<gallery><br />
image:NAMIC_logo.png<br />
image:Nac.png<br />
image:NCIGTlogo.gif<br />
</gallery><br />
<br />
<br />
=Logistics =<br />
<br />
Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com<br />
<br />
<br />
Registration: To register for the meeting, click [http://secondmedicalimageregistrationretreat.eventbrite.com here].<br />
<br />
This event will bring together registration algorithm researchers from NAC, NA-MIC, NCIGT and close associates. The agenda is to discuss some of the interactive methods for image registration - from both algorithmic and engineering perspectives. <br />
<br />
=Topics=<br />
<br />
=Agenda=<br />
<br />
==Tuesday==<br />
*6pm: Reception with hors de'oeuvres at La Verandah Terrace of Hotel.<br />
<br />
==Wednesday==<br />
8:am start<br />
<br />
==Thursday==<br />
8:am start<br />
<br />
<br />
=Registered Attendees=<br />
This is a list of the registered attendees. If you need to register, please click on [http://secondmedicalimageregistrationretreat.eventbrite.com this link.]<br />
<br />
#Ron Kikinis<br />
#Tina Kapur<br />
#Steve Pieper<br />
<br />
Expected to Register Attendees:<br />
<br />
#Sandy Wells<br />
#Allen Tannenbaum<br />
#Jay Jagadeesan<br />
#Torsten Rohlfing<br />
#Raul San Jose Estepar</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83062Second Medical Image Registration Retreat, Puerto Rico2013-08-02T14:41:58Z<p>Dchamberlain: </p>
<hr />
<div>Dates: <br/><br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location: <br/><br />
Hotel El Convento <br/><br />
100 Cristo Street <br/><br />
Old San Juan, PR 00901 <br/><br />
Ph: 787-723-9020 <br/><br />
www.elconvento.com</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83061Second Medical Image Registration Retreat, Puerto Rico2013-08-02T14:41:37Z<p>Dchamberlain: </p>
<hr />
<div>Dates:<br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location:<br />
Hotel El Convento <br/><br />
100 Cristo Street<br />
Old San Juan, PR 00901<br />
Ph: 787-723-9020<br />
www.elconvento.com</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83060Second Medical Image Registration Retreat, Puerto Rico2013-08-02T14:41:14Z<p>Dchamberlain: </p>
<hr />
<div>Dates:<br />
Wednesday, February 19, 2014- Thursday, February 20, 2014<br />
<br />
Location:<br />
Hotel El Convento<br />
100 Cristo Street<br />
Old San Juan, PR 00901<br />
Ph: 787-723-9020<br />
www.elconvento.com</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Second_Medical_Image_Registration_Retreat,_Puerto_Rico&diff=83059Second Medical Image Registration Retreat, Puerto Rico2013-08-01T18:02:18Z<p>Dchamberlain: Created page with 'Details to Follow'</p>
<hr />
<div>Details to Follow</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Events&diff=83058Events2013-08-01T18:01:58Z<p>Dchamberlain: /* 2014 */</p>
<hr />
<div>__TOC__<br />
== Introduction ==<br />
{| border="00" cellpadding="8" cellspacing="0" <br />
|-<br />
| rowspan="2"| NA-MIC organizes a variety of events. The engineering core holds a weekly telephone conference. Workshops address specific research focus areas. Training events aim at training NA-MIC participants and outsiders in NA-MIC technologies. Project weeks are intended for making progress in a variety of projects. The majority of NA-MIC events are hands-on and open to collaborators and interested scientists.<br><br />
If you want to get going with Slicer, go to the list of past events and look for the most recent one-day workshop or tutorial.<br />
| style="background: #ebeced" colspan="2" align="center"| <b>Example of a Training Event</b><br />
|-<br />
| style="background: #ebeced"| [[Image:RSNA2011.jpg|250px]]<br />
| style="background: #ebeced"| The RSNA 2011 training workshop in full swing. For more information about the workshop, please click [http://www.na-mic.org/Wiki/index.php/RSNA_2011 here].<br />
|}<br />
<br />
== [[TCON:Main|'''Telephone Conferences''']] ==<br />
== Upcoming Events ==<br />
<br />
== 2013 ==<br />
*'''August 1-2''': [[BRAINS_CAMP| BRAINSCamp workshop, Iowa City, Iowa]]<br />
*'''August 5''': [[AAPM 2013 | 3D Slicer User Group at AAPM 2013, Indanapolis, IN]]<br />
*'''September 11''': [[WFNS2013| Invited lecture at the 15th WFNS World Congress of Neurosurgery, Seoul, Korea]]<br />
*'''September 22''': [[MICCAI2013| MICCAI 2013 DTI Tractography Challenge on Peritumoral White Matter Anatomy for Neurosurgical Decision-Making]]<br />
*'''September 26''': [http://www.dkfz.de/en/mbi/ctk-miccai2013/index.html MICCAI 2013 CTK Tutorial]<br />
*'''September 29''':[[Beijing_2013| 3D Slicer invited workshop, PLA Hospital, Beijing, China]]<br />
*'''September 30''':[[Changchun_2013| 3D Slicer invited seminar, Changchun, China]]<br />
----<br />
*'''December 1-6''': [http://rsna.org/annual_meeting_2013.aspx RSNA 2013, Chicago, Il]<br />
<br />
== 2014 ==<br />
*'''January 6-10:''' [[2014_Winter_Project_Week|'''Winter Project Week in Salt Lake City]]'''<br />
*'''February 19-20:''' [[Second Medical Image Registration Retreat, Puerto Rico]]<br />
<br />
== Standing Events ==<br />
* [[TCON:Main|A list of all upcoming and past teleconferences is available here]]<br />
* [[Engineering:Programming_Events|Hands on Project Events]]<br />
* [http://www.slicer.org/slicerWiki/index.php/Slicer:Developer_Meetings Slicer developer meetings are here]<br />
* [[Event:Journal Club at BWH|Journal Club at BWH]]<br />
<br />
== Past Events ==<br />
==2013==<br />
*'''July 19''': [[Dr.Dhenain's visit to the SPL, Boston, MA]]<br />
*June 26-29: [[CARS2013| 3D Slicer hands-on workshop on Image-Guided Therapy and joint Slicer/CTK/MITK workshop, CARS 2013, Heidelberg, Germany]]<br />
*June 17-21: [[2013_Summer_Project_Week|'''Summer Project Week at MIT]]''', [[2013_Tutorial_Contest|Summer 2013 Tutorial Contest]]<br />
*June 14: [[UAEM_Visit|Prof. Avila-Vilchis and Prof. Vilchis-Gonzales visiting the SPL]]<br />
*June 14: [[BWH_2013| 3D Slicer Hands-on Workshop, Surgical Planning Lab, 1249 Boylston St., Boston, MA]]<br />
----<br />
*May 31: [[AAPM_New_England_Chapter_Summer_Meeting| Invited Lecture at the AAPM Chapter New England Summer Meeting, Portsmouth, NH ]]<br />
*May 20-24: [http://www.commontk.org/index.php/CTK-Hackfest-May-2013 CTK Hackfest], Kingston, Ontario, Canada<br />
*May 24: [[Kitware_Course| 3D Slicer: Visualize and Analyze your datasets, Kitware Training Course,]] Lyon, France. <br />
*May 11: [http://www.youtube.com/watch?v=9t1V-Ro0Cak SlicerIGT hands-on demo], Science Rendezvous, Kingston, Ontario, Canada<br />
----<br />
*April 22: [[2013_ISMRM_CardiacStudyGroup_CARMA|ISMRM 2013 Cardiac Study Group Tutorial]]: Slicer for segmentation and enhancement quantification in cardiac LGE-MRI. Salt Lake City, Utah.<br />
*April 10-11: [http://www.na-mic.org/Wiki/index.php/Iwate_2013_Training Slicer Ultrasound Workshop], Iwate, Japan<br />
*April 9: [http://www.na-mic.org/Wiki/index.php/Tokyo_2013_Training Slicer Workshop], Tokyo, Japan<br />
*April 8: [[Imaging_in_Neuroscience| Imaging in Neuroscience Course]], Boston<br />
----<br />
*March 21-23: [http://www.ncigt.org/pages/IGT_Workshop_2013 6th NCIGT and NIH Image Guided Therapy Workshop] in Crystal City, VA<br />
*March 11: [[CIR_visit_Vienna_Medical_Center | Slicer lecture at the Computational Image Analysis and Radiology laboratory, Medical University, Vienna]]<br />
*March 11: [[SlicerRT_workshop | SlicerRT workshop, Medical University, Vienna]]<br />
*March 8: [http://www.na-mic.org/Wiki/index.php/Autoseg_2013 Automatic Segmentation Algorithm Workshop, Boston, MA, USA]<br />
*March 7-11: [http://www.na-mic.org/Wiki/index.php/ECR_2013 European Congress of Radiology, Vienna, Austria]<br />
*March 4: [[2013-03-4- TWMU_Visit| Delegates from Research Administration Office at Tokyo Women's Medical University visits SNR Lab/NCIGT and AMIGO]]<br />
*February 28-March 5: [[2013_Dr_Chen_Visit | Visit of Dr. Xiaolei Chen, PLA General Hospital, Beijing at the SPL]]<br />
----<br />
*February 22: [[2013-02-22 Dr. Takahashi's Visit to SNR Lab/NCIGT and AMIGO|Dr. Takahashi's Visit to SNR Lab/NCIGT and AMIGO]]<br />
*February 14: [[2013-02-14-Slicer_Demo_at_Memorial_Sloan_Kettering_Cancer_Center | Demo the Slicer segmentation and registration tools at the Memorial Sloan Kettering Cancer Center]]<br />
*February 14: [[2013-02-14-Korean_Surgical_Robot_Research_Team_Visit | Surgical Navigation and Robotics Laboratory hosts a robotic surgery research group from Korea]]<br />
*February 9-14: [http://www.na-mic.org/Wiki/index.php/SPIE_2013_DTI_Workshop SPIE 2013 Diffusion Tensor Imaging Course, Orlando, FL] <br />
*February 7: [[2013-02-07-MGH_Slicer_user_meeting | Slicer user/developer meeting with the MGH user group]]<br />
----<br />
*January 31: [[GolbyLabMeeting_DTIChallenge | MICCAI DTI Challenge Presentation at Golby Lab Meeting, Brigham and Women's Hospital]]<br />
*January 28: [http://www.assembla.com/wiki/show/slicerrt/20130128_slicer_matlab_personal_cloud_meeting Slicer Matlab personal cloud meeting]<br />
*January 7-11: [[AHM_2013|'''AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
==2012==<br />
*December 10: [[ PNL_2012 | PNL Slicer4 Training Workshop]]<br />
*December 3: [[HST_2012 | Harvard-MIT Division of Health Science and Technology - Diffusion Tensor Imaging Course]]<br />
----<br />
*November 25-30: [[RSNA_2012 | 98th Annual Meeting of the Radiological Society of North America (RSNA 2012), Chicago IL]]<br />
*November 14: [[CMF_Workshop_Cleveland_2012| 3D Cranio Maxillo Facial workshop, CWRU Cleveland, OH]]<br />
*November 8-9: [http://meetings.nigms.nih.gov/index.cfm?event=general&ID=15208 NCBC showcase event in Washington DC]: [[media:NA-MIC-Overview-2012-11.pdf|PDF of the overview slides]]<br />
----<br />
* October 8: [[Niguarda_Ospedale_Visit| Invited visit to the Epilepsy and Parkinson Surgery Centre "Claudio Munari" Ospedale Niguarda "Ca' Granda", Milan, Italy]]<br />
* October 1: [[DTI_Tractography_Challenge_MICCAI_2012| DTI Tractography Challenge, MICCAI 2012, Nice, France]]<br />
* October 1: [http://www.sci.utah.edu/stia2012-home.html 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12), MICCAI 2012, Nice, France]<br />
----<br />
* September 25-26: [[Pieper-MeVis-2012-09| Steve Pieper visited MeVis]] <br />
* September 20: [[DrShekhar_Visit_Sep_2012|Dr. Raj Shekhar's visit to NCIGT]]<br />
* September 12: [[Universidad Autonoma del Estado de Mexico Symposium | 3DSlicer invited lecture at the First Symposium on Medical Bioengineering, Universidad Autónoma del Estado de México, Mexico City, Mexico]]<br />
* September 10:''' [[HST_583_2012| Harvard-MIT Division of Science Health and Technology HST.583 - Neuroimage Analysis Lab]]<br />
----<br />
* August 29: [[BU_Slicer4_Training_Session| BU Slicer4 Training session]]<br />
* August 20: [[Slicer4.2Planning|Slicer 4.2 Planning meeting]]<br />
* August 20-21: [[Core 1 Retreat 2012|Core 1 Retreat 2012 in Park City, UT]]<br />
----<br />
* July 30: [[AAPM_2012 | 3D Slicer User Group at AAPM, Charlotte, NC]]<br />
* July 9-13: [http://www.commontk.org/index.php/CTK-Hackfest-Jul-2012 CTK Hackfest, Boston, USA]<br />
----<br />
* June 30: [[CARS_2012 | NA-MIC IGT Workshop, CARS 2012]] <br />
* June 18-22: [[2012_Summer_Project_Week|'''Summer Project Week at MIT''']]; [[2012_Tutorial_Contest| Summer 2012 Tutorial Contest]]<br />
----<br />
* May 21-22: [[Madrid-May-21-2012-Slicer-Workshop| Slicer workshop in Madrid, ES]] <br />
* May 16: [http://www.ias.uwa.edu.au/lectures/kikinis| Public lecture, UWA, Perth, AU] <br />
* May 14: [http://www.ias.uwa.edu.au/masterclass/kikinis Masterclass, UWA, Perth, AU]<br />
* May 2: [http://www.hisa.org.au/events/event_details.asp?id=224112 Slicer workshop at St Vincent's Hospital in Fitzroy, Melbourne, AU]<br />
----<br />
* April 30-May 1: [http://www.cs.ucl.ac.uk/opensource_mia_ws_2012/ Slicer presentation at the International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain]<br />
* April 26: [http://www.hisa.org.au/events/event_details.asp?id=224111 Slicer workshop at St. Vincent Hospital in Sydney, AU] <br />
* April 5: [[NEU-Medical-Physics-Seminar| Northeastern University Medical Physics Seminar, Gregory Sharp, Nobuhiko Hata]]<br />
----<br />
* March 20-21: [[Iowa-March-20-2012-Slicer-Workshop| Slicer workshop in Iowa]] <br />
* March 16: [[Particle_UNC_Utah| Particle training seminar, UNC Chapel Hill, NC]]<br />
* March 5-6: Slicer booth presentation at the annual [https://wiki.nci.nih.gov/display/CIP/QIN Quantitative Imaging Network] face-to-face meeting; NCI, Washington DC<br />
----<br />
* February 27: [[Slicer-4.1| Plans for Slicer 4.1]]<br />
* February 29: [[Chapel-Hill-February-29-2012-Slicer-Talk| Slicer talk at UNC]] <br />
* February 14: [[TWMU_Medtronics_OpenIGTLink| TWMU Open IGT Link - Stealth station Project, Kick-off, Tokyo, Japan]]<br />
* February 5: [[SPIE_2012_DTI_Workshop| SPIE 2012 DTI Course, San Diego, CA]]<br />
----<br />
* January 9-13: [[AHM_2012|'''AHM, EAB, Winter Project Week in Salt Lake City''']]<br />
<br />
== 2011 ==<br />
*November 27-December 2: [[RSNA_2011 | 97th Annual Meeting of the Radiological Society of North America (RSNA 2011), Chicago IL ]]<br />
*November 14-18: [http://www.commontk.org/index.php/CTK-Hackfest-Nov-2011 CTK Hackfest, Sophia Antipolis, France]<br />
*November 11: [[SFN2011 Diffusion_Tensor_Imaging_Analysis Workshop |White Matter Exploration with Diffusion Tensor Imaging: Fundamentals and Perspectives - SFN 2011 Workshop, Washington DC]]<br />
*November 9: [[CMF_Workshop_Cleveland| 3D Cranio Maxillo Facial workshop, CWRU Cleveland, OH]]<br />
*November 3: [[2011_Slicer4-PreRSNAHackFest|Slicer4 PreRSNA Hackfest, Google hangouts]]<br />
*November 2: [[BWH_Resident_Fair| 3DSlicer exhibit at the BWH Resident Fair, Boston, MA]]<br />
----<br />
*October 20: [[2011_Slicer4-Documentation-Sprint|Slicer4 Documentation Sprint]]<br />
*October 14-15: [[2011_Algorithms_Retreat|Algorithm Core Retreat in New England]]<br />
*October 12-13: [http://www.ncigt.org/pages/IGT_Workshop_2011 NCIGT Workshop in DC]<br />
----<br />
*September 28: [http://wiki.na-mic.org/Wiki/index.php/Event:Journal_Club_at_BWH Journal Club talk: Seyed-Ahmad Ahmadi]<br />
*September 26-28: [[Events:2011_Hungary_Slicer_Training|Programming and End-User Training in Szeged Hungary]]<br />
*September 18: '''[http://www.na-mic.org/Wiki/index.php/Events:_DTI_Tractography_Challenge_MICCAI_2011 DTI Tractography for Neurosurgical Planning: A Grand Challenge - MICCAI 2011 Workshop, Toronto, Canada]'''<br />
----<br />
*August 4: [[Events:UBC_3D_Slicer_workshop_August_2011|UBC 3D Slicer workshop August 2011]]<br />
*August 2: [[Events:2011-08-02-AAPM-Slicer-Users-Group-Meeting|3D Slicer users group meeting at AAPM annual meeting in Vancouver BC]]<br />
----<br />
*July 19-21: [[Events:Slicer4-Review-07-2011 | Slicer 4 Review and Programming Sprint, 1249 Boylston St., Boston, MA]]<br />
----<br />
*June 26-30: [[Events:3DSlicer_Booth_OHBM_2011 | 3DSlicer Booth, OHBM 2011, Quebec City, Canada]]<br />
*June 20-24: [[2011_Summer_Project_Week|'''Summer Project Week at MIT''']]<br />
*June 15: [[Events:2011-06-15-Robarts-Slicer-Workshop|Slicer Workshop at the Biomedical Imaging Research Centre at the University of Western Ontario]]<br />
*June 13: [http://www.na-mic.org/Wiki/index.php/Summer_2011_Tutorial_Contest Summer 2011 Tutorial Contest] Submission dead-line.<br />
*June 7: [[Events:2011-06-07-UCSF-Diffusion-Imaging-Workshop|UCSF Diffusion Imaging Workshop, San Francisco]]<br />
----<br />
*May 5: [[Events:Computational_Methods_for_Radiation_Oncology|Computational Methods for Radiation Oncology, Boston]]<br />
----<br />
*April 27: [[Events:Slicer-Hands-On-Hiroshima-2011|Slicer and OpenIGTLink Hands-on Training, Hiroshima, Japan]]<br />
*April 22: [[Event:2011-04-UtahDBP-Training|Slicer Hands-on Training For The Utah Afib Team]]<br />
*April 12: [[Event:2011-04-DiMaioTalk|Talk by Simon DiMaio "da Vinci and Beyond"]]<br />
*April 5: [http://www.na-mic.org/Wiki/index.php/Events:_Johns_Hopkins_University_Seminar_April_2011 Training Workshop at Johns Hopkins University]<br />
----<br />
*March 16-18: [http://vizbi.org VIZBI 2011] in Cambridge, MA includes NAMIC-affiliated speakers and VTK tutorials.<br />
*March 15-16: [http://catalyst.harvard.edu/services/ittm/module1.html Harvard Catalyst Biomarkers and Imaging in Drug Development course] includes [[media:Pieper-Image Processing Strategies.pptx|a presentation on image processing approaches]] including NA-MIC and 3D Slicer.<br />
*March 11: [[CTSC:Slicer_handson.021810| 3D Slicer Quantitative Medical Image Data Visualization Hands-On Workshop, Countway room 403, (12-1pm)]] <br />
*March 4: New [http://www.slicer.org/slicerWiki/index.php/Slicer3:3.6_Final_Issues#DONE:_Issues_fixed_for_inclusion_in_Slicer_3.6.3_--_included_in_release_builds_of_March_4.2C_2011 Slicer3.6.3 Patch Release]<br />
----<br />
*February 19-23: [[Event:2011_Registration_Retreat|Registration Retreat]]<br />
*February 18: [[CTSC:Slicer_handson.021810| 3D Slicer Quantitative Medical Image Data Visualization Hands-On Workshop]] Harvard Countway Library room 403, (12-1pm)<br />
*February 7-11: [http://www.commontk.org/index.php/CTK-Hackfest-Feb-2011 CTK Hackfest in Chapel Hill, NC]<br />
*February 4: [[Media:Fedorov-MGH-4Feb2011.pdf|Presentation of 3D Slicer for the MGH tumor measurement group]]<br />
----<br />
*January 10-14: '''[[AHM_2011|AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
== 2010 ==<br />
*December 6-7: [[Events:Dundee-Dec-2010|Slicer workshop in Dundee, UK]]<br />
*December 8: [[Events:Manchester-Dec-2010|Slicer workshop in Manchester, UK]]<br />
----<br />
*November 28-December 3: RSNA 2010, The 96th Annual Meeting of the Radiological Society of North America, Chicago IL<br />
**November 29: 2:30 pm-4:00 pm: [[Events:RSNA_2010| 3D Interactive Visualization of DICOM images with Slicer]]<br />
**November 30: 10:30 am-12:00 pm: [[Events:RSNA_2010_CTSA| Quantitative Medical Imaging for Clinical Research and Practice]]<br />
**December 2: 10:30 am-12:00 pm: [[Events:RSNA_2010_didactic| Lifecycle of an imaging biomarker: from validation to dissemination]]<br />
* November 17-18: [[EngineeringRetreat2010|Engineering Core retreat]]<br />
* November 12: [[MGH-NA-MIC-2010-Kickoff|MGH Kick-off meeting with Algorithms and Engineering]]<br />
* November 8-9: [[2010-WestCoastMaster|West Coast Events]]<br />
* November 5-6: [[AlgorithmRetreat2010|Algorithm Core retreat]]<br />
* November 4-6: [[WidgetDesign2010|Widget Design Fiesta, Kitware, South Carborro, NC]]<br />
* November 4-5: [[media:HataJJTalkNov2010.pdf |Robotics Presentation by Dr. Noby Hata at Advances in Surgical Technologies Symposium, Celebration, FL]]<br />
----<br />
* October 25-26: [[Iowa-NA-MIC-2010-Kickoff| Iowa NA-MIC Kickoff meeting (UNC Core 1 visit)]]<br />
* October 18:[[HST_583_2010_DTI_Course| Harvard MIT Division of Health Sciences and Technology - Diffusion Tensor Imaging Lab]] <br />
----<br />
* September 24: [http://lcib.rutgers.edu/miccai2010/ Prostate Cancer Imaging Workshop at MICCAI in Beijing, China ]<br />
* September 23: [http://www.grand-challenge.org/index.php/MICCAI_2010_Workshop Workshop on Medical Image Analysis for the Clinic - A Grand Challenge] <br />
* September 23: [[Beijing_2010_NA-MIC_Workshop|Slicer Tutorial at Chinese PLA General Hospital in Beijing, China]]<br />
* September 20: [[MICCAI_2010| NA-MIC Tutorial at MICCAI 2010 in Beijing, China]]<br />
* September 13: [[HST_583_2010| Harvard MIT Division of Health Sciences and Technology - Neuroimage Analysis Lab]]<br />
----<br />
* August 12-13: [[QtAugust2010| Review of Qt port]]<br />
* August 11: [[2010-Slicer-UNCDuke|Slicer training event at UNC and Duke]]<br />
* August 10: [[2010-Sato-talk|Research retreat of SNR Laboratory, followed by Dr. Yoshinobu Sato's talk]]<br />
* August 5: [http://www.termine-meduniwien.at/mediafiles/38/Vortragsankuendigung_Prof_Ron_KIKINIS_05082010.pdf?sid=4f2a2b592fc7004cea39a34993b1d72d Presentation at the AKH, Vienna]<br />
----<br />
* July 1: [[2010-Slicer-StLouis|Slicer training event in St. Louis]]<br />
----<br />
* June 26: [[2010_CARS| NA-MIC Tutorial at the Computer Assisted Radiology and Surgery Conference in Geneva, Switzerland]]<br />
* June 21-25: '''[[2010_Summer_Project_Week|Summer Project Week at MIT]]'''<br />
* June 18: [[2010_CCA_Retreat|Clinical Computational Anatomy one day retreat in Boston]]<br />
----<br />
* May 20-23:[[cscbce_2010 | 5th Canadian Student Conference <br />
on Biomedical Computing and Engineering]]<br />
* May 17-21: [http://www.commontk.org/index.php/CTK-Hackfest-May-2010 CTK Hackfest at Georgetown University]<br />
* May 12: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Registration Hands-On Workshop] at Countway Library, Harvard Medical School<br />
----<br />
* April 28: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Visualization Hands-On Workshop] at Countway Library, Harvard Medical School<br />
* April 29: [[2010_Slicer36_Module_Cull|Review of modules to keep and cull for the 3.6 release]]<br />
* April 9-10: [[2010_University.of.Iowa| NA-MIC Training Workshop at the University of Iowa ]]<br />
* April 7: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Registration Hands-On Workshop] at Countway Library, Harvard Medical School<br />
----<br />
* March 24: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Visualization Hands-On Workshop] at Countway Library, Harvard Medical School<br />
* March 19: [[U-Tokyo-visit-03192010| NCIGT Workshop with delegates from University of Tokyo]] at Brigham and Women's Hospital<br />
* March 16: [[Events:Slicer-Hands-On-Tokyo-2010| Image Guided Therapy research using 3D Slicer - Hands-On Workshop at Tokyo Women's Medical University, Tokyo, Japan (page in Japanese)]]<br />
* March 10: [http://summit2010.amia.org/session-details NA-MIC Presentation at AMIA 2010]<br />
* March 9: Registration Clinic at [http://www.ncigt.org/pages/IGT_Workshop_2010 IGT Workshop, Arlington, VA]<br />
* March 7-10: Several NA-MIC personnel are participating in [[Events:CTK-Pre-Hackfest-2010|The CTK Pre-Hackfest]] in Heidelberg, Germany. This meeting is a kick off that is expected to lead to active working meetings similar to the NA-MIC Project Week activities. The meeting is organized by the [http://commontk.org CTK] group.<br />
* March 3: Steve Pieper presents on "Visualizing Anatomy and Function from MRI Data" at [http://vizbi.org/2010/ the 2010 EMBO Workshop on Visualizing Biological Data]. NA-MIC Wiki page with [[VIZBI2010|Supplemental information from the VIZBI Conference]]. [http://www.nature.com/nmeth/journal/v7/n3s/index.html A special edition of Nature Methods] contains papers by the presenters.<br />
----<br />
* February 24: [[CTSC:Slicer_handson.022410| 3D Slicer Medical Image Data Visualization Hands-On Workshop]] at Countway Library, Harvard Medical School<br />
* February 14: [[Events:CTK-Workshop-SanDiego-2010| 4th CTK workshop]] at SPIE in San Diego, CA<br />
* February 9: [[Hata_BBN_visit|Hata BBN lecture]]<br />
----<br />
* January 4-8: '''[[AHM_2010|AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
==2009==<br />
* December 16-17: [[Dec-2009-SlicerAIMBrainstorming|Slicer Annotation and Markup Brainstorming]]<br />
* December 15: [[Dec-2009-SlicerXND-DesignAndEngineering | Slicer/XND Preliminary Design & Engineering Planning Session at WUSTL]]<br />
* December 1: [[Events:RSNA_CTSA_2009| CTSA at RSNA]]<br />
----<br />
* November 30: [[Events:RSNA_2009| 3-D Interactive Visualization of DICOM images with Slicer - RSNA 2009]] 95th Annual Meeting of the Radiological Society of North America, Chicago, IL<br />
* November 29: [[Events:CTK-Workshop-Chicago-2009| 3rd CTK workshop]] at RSNA in Chicago<br />
* November 23: [[CTSC:Slicer_handson.112309| 3D Slicer Medical Image Data Visualization Hands-On Workshop]], Countway Library, Harvard Medical School, room 403, 12-1pm<br />
----<br />
* October 16: [[SFN2009 Slicer DTI Workshop | Mapping the Brain with Diffusion Tensor Imaging - A Hands-On Workshop]] [http://www.sfn.org/am2009/ Annual Meeting of the Society of Neuroscience, Chicago, IL]<br />
* October 9: [[Events:VT-NAMIC-NCBC-Collaboration-meeting-2009| VirginiaTech-NA-MIC collaboration progress update and planning meeting]], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA<br />
----<br />
* September 30: [[CTSC:ACRIN 09/30/09| Quantitative imaging workshop]] ACRIN fall meeting, Arlington, VA. Workshop in collaboration with Duke University and Johns Hopkins.<br />
* September 25: [[Events:CTK-Workshop-September-2009| 2nd CTK workshop, Oxford UK]]<br />
* September 24: [http://campwww.informatik.tu-muenchen.de/AMIARCS09/doku.php Augmented Environments for Medical Imaging including Augmented Reality in Computer-Aided Surgery (AMI ARCS)] MICCAI 2009 workshop, London, UK. Demonstration of the [[DBP2:JHU:PerkStation | Perk Station]]. One-on-one tutorial available [mailto:lasso@cs.queensu.ca on request].<br />
* September 24: [http://smarts.lcsr.jhu.edu/CAI-Workshop-2009 Systems and Architectures for CAI] MICCAI 2009 workshop, London, UK. Presentation of the [[DBP2:JHU:Roadmap | computer assisted intervention plug-in module for 3D Slicer]].<br />
* September 24: [http://www.cs.ucl.ac.uk/miccai/dmfc Diffusion Modelling and the Fibre Cup] MICCAI 2009 workshop, London, UK. Presentation of the DTI tractography validation pilot study.<br />
* September 20-24: [http://wiki.na-mic.org/Wiki/index.php/2009_prostate_segmentation_challenge_MICCAI Prostate MRI Segmentation Challenge"] at [http://grand-challenge2009.bigr.nl/index.php MICCAI 3D Segmentation in the clinic: a grand challenge].<br />
* September 20: [http://lmi.bwh.harvard.edu/DMRI09 MICCAI 2009 Tutorial in London: Trends in High Angular Resolution Diffusion Imaging and Brain Tissue Modelling]<br />
* September 20: [http://people.csail.mit.edu/pohl/pmmia09.html MICCAI 2009 Workshop: Probabilistic Models for Medical Image Analysis]<br />
* September 20: MICCAI Workshop on Information theoretic similarity measures for image registration and segmentation<br />
* September 16-17: [[Sept-2009-SlicerWidgetsBrainstorm|Brainstorming Session on next generation widgets for Slicer]]<br />
----<br />
* August 25: [[Events:Slicer_Workshop_August_2009|Slicer Workshop]] at [http://www.ibmisps-worldcongress.org/precongress.asp IBMISPS], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA<br />
* August 21: [[Events:Registration_Summit_August_2009|Registration Meeting]], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA<br />
----<br />
* June 29: [[Events:CTK-Workshop-June-2009|Common Toolkit Workshop]] at the [http://www.dkfz.de/index.html DKFZ] in Heidelberg, Germany hosted by the [http://www.dkfz-heidelberg.de/en/mbi/index.html MBI].<br />
* June 28: [http://www.biomedicalimaging.org/2009/Tutorial_04.asp Tutorial on Statistical Shape Analysis: Theory, Software, and Applications] at [http://www.biomedicalimaging.org/2009/default.asp ISBI 2009], Boston, MA.<br />
* June 25: [[Events:TutorialContestJune2009 | Summer 2009 Tutorial Contest]]<br />
* June 22-26: '''[[2009_Summer_Project_Week|The FIRST JOINT Summer Project Week at MIT]]'''<br />
* June 17: [[CAOS2009_Slicer Workshop| Hands-On Workshop for Slicer IGT for Computer Aided Orthopeadic Surgery]]<br />
* June 17: [[SlicerKyusyuJune2009Lecture| Lecture and demonstration, Image Guided Therapy of abdominal organs, N Hata, at Kysyu University Medical School, Kyusyu, Japan]]<br />
* June 16: [[SlicerNagoyaJune2009Workshop| Workshop: How to make your custom IGT software using 3D Slicer, N Hata, Nagoya Institute of Technology, Nagoya, Japan]]<br />
----<br />
* May 11-12: Core 1 PI meeting at Georgia Tech.<br />
* May 8: [http://www.na-mic.org/Wiki/index.php/IMFAR2009 IMFAR 2009] - [http://www.autism-insar.org/index.php?option=com_content&task=view&id=36&Itemid=105 Presentation at the 8th Annual International Meeting for Autism Research (IMFAR) in Chicago, IL] entitled Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data".<br />
* May 8: Focus session on [[Volume Rendering and Loadable Modules: (Engineering & Usability Notes)]].<br />
* May 4-5: Core 1 / Core 2 visit at Georgia Tech ([[May 4, 2009 Notes]], [[May 5, 2009 Notes]]).<br />
----<br />
* March 19: [[NCI Slicer Tutorial 03-19-2009|NCI Slicer tutorial, ]] We had to reschedule! New date TBD!<br />
* March 4: [[2009-03-04-Editor-Usability|Interactive Editor usability]] session in Rons office<br />
----<br />
* February 24: 1249 Boylston: [http://www.slicer.org/slicerWiki/index.php/Slicer3:Using3.4 Afternoon session to walk through common Slicer3.4 usage scenarios]<br />
* February 24: BWH (location: Mellins Library) [[BWH_RadiologyResident_Training2009.1| NA-MIC 3D Slicer 3.2 Hands-On Workshop]] <br />
* February 17-20: [[GWE_MiniRetreat|GWE Mini Retreat]], Boston<br />
----<br />
* January 28-30: [http://www.slicer.org/slicerWiki/index.php/Slicer3:MiniRetreat_January_28-30,2009 Slicer3 MiniRetreat]<br />
* January 7: [[Events:TutorialContestJan2009| Winter 2009 Tutorial Contest]] <br />
* January 5-9: '''[[AHM_2009| AHM,]] [[2009_EAB|EAB,]] [[2009_Winter_Project_Week|Winter Project Week in Salt Lake City]]'''<br />
<br />
== 2008 ==<br />
* December 15-16: [[2008_Engineering_review_at_UNC|2008 Engineering review at UNC]], Chapel Hill<br />
* Fall Semester 2008 Ibanez and Schroeder teach [http://public.kitware.com/OpenSourceSoftwarePractice/index.php/Main_Page Open Source Software Course] at Rensselaer Polytechnic Institute<br />
* December 8-12: [[2008_IGT_Project_Week|IGT Hands-on Project Week]], Boston<br />
* December 1: [[Events:RSNA2008| Tutorial at RSNA]], [http://rsna2008.rsna.org/ RSNA conference website]<br />
----<br />
* November 15-19: [[NA-MIC_Lupus_DBP_Worskhop_SFN2008|NA-MIC Lupus DBP White Matter Lesion Tutorial Release at 2008 Society for Neuroscience Annual Meeting, Washington, DC]]<br />
* November 18: [[Slicer3_Q&A_2008-11-18|Slicer Q&A Session at BWH]]<br />
* November 4: [[NA-MIC_3D_Visualization_Workshop_Massachussetts_General_Hospital|NA-MIC 3D Visualization Workshop at Massachusetts General Hospital, Boston, MA]]<br />
----<br />
* October 30 : [[NA-MIC_3D_Visualization_Workshop_Brigham_and_Women's_Hospital| NA-MIC 3D Visualization Workshop at Brigham and Women's Hospital, Boston, MA]]<br />
* October 28: [[Harvard_Medical_Education_Day | Harvard Medical Education Day, Boston, MA]]<br />
* October 15-16: [[Robarts_Training_Session | NA-MIC kit training event at The University of Western Ontario]], London, Ontario, Canada<br />
* October 21: Nobuhiko Hata gave a talk entitled "Role of Image Processing, Navigation and Robots in MRI-guided Intervention", at the Bioimaging Sciences Division, Department of Radiology, Yale University School of Medicine, New Heaven, CT<br />
* October 17: Nobuhiko Hata gave a talk entitled "Role of Image Processing, Navigation and Robots in MRI-guided Intervention", at Robarts Institute, University of Western Ontario, Ontario, Canada <br />
* October 7: [[Stefan_Baumann_visit | Stefan Baumann from Novartis will present at 1249 Boylston]]<br />
* October 7: [[Slicer_Day_October_2008|Slicer in the Fall]], 1249 Boylston, Boston MA<br />
----<br />
* September 10: [[Miccai_2008_Tutorial| Interfacing third-party software with the NA-MIC Kit]]: Tutorial at MICCAI 2008, New York City<br />
* September 10: [[Miccai_2008_Prostate_Workshop| Prostate image analysis and computer-assisted intervention]]: Workshop at MICCAI 2008, New York City<br />
* September 6: [[Miccai_2008_Systems_and_Architecture_Workshop| Systems & architecture for computer a<br />
<br />
== 2007 ==<br />
* December 12-14: [[2007_December_Slicer_IGT_Programming|Slicer IGT Programming Event]]<br />
----<br />
* November 2: [http://www.insightsoftwareconsortium.org/wiki/index.php/2007_MICCAI_Open_Workshop Third Annual Open Source Workshop at MICCAI]<br />
----<br />
* October 16-17: [http://nbirn.net/about/current/ahm2007.shtm BIRN AHM] Query Atlas and Qdec interfaces in Slicer 3 presented at the BIRN AHM.<br />
* October 14-20: [[2007_October_Collaboration_Visit_Robert_Israel|Robert Israel Collaboration Visit to the Surgical Planning Laboratory]]<br />
** [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Module:QueryAtlas See this page] for links to QueryAtlas slides, movies and example datasets.<br />
** [http://wiki.na-mic.org/Wiki/index.php/Image:Slicer3QDEC_AHM2007.ppt See this page] for links to Qdec slides.<br />
* October 1-2: [[SanteFe.Tractography.Conference | Contrasting Tractography Methods Conference, Santa Fe]]<br />
----<br />
* September 12: [[Engineering:September 12, 2007 | Engineering End of Summer Meeting]]<br />
* September 11: [[GPU.Enabled.Tools.Meeting | GPU-enabling of NA-MIC Algorithms, Boston]]<br />
----<br />
* August 21: [[DBP2:UNC:Cortical Thickness Roadmap | UNC DBP Roadmap Tcon]]<br />
----<br />
* June 25-29: '''[[2007_Programming/Project_Week_MIT|Summer Project Week at MIT]]'''<br />
* June 9: [[Training:OHBM2007_Training_Workshop|OHBM DTI Training Workshop, Chicago]]<br />
* June 1: [[2007_Pohl_at_CCB|Pohl Talk at CCB: A Hierarchical Segmentation Algorithm for MR Brain Images]]<br />
----<br />
* May 29-31: [[2007_Core_1_Meeting|Annual Core 1 Workshop, Boston]]<br />
----<br />
* April 24: Steve Pieper presented Slicer3 and the NA-MIC Kit to the [http://gray.mgh.harvard.edu/content/index.php Medical Physics group at MGH] [http://wiki.na-mic.org/Wiki/images/9/9c/Pieper-MGH-medical-physics-2007-04-24.ppt (slides)]<br />
----<br />
* March 29-30: [http://www.slicer.org/slicerWiki/index.php/Slicer3:MiniRetreat_March_29%2C_30%2C_2007 Slicer3 Mini-Retreat, Boston]<br />
----<br />
* February 21-22: Vince Calhoun from MIND is visiting at MIT and MGH [http://www.csail.mit.edu/events/eventcalendar/calendar.php?show=event&id=1349 Talk announecement]<br />
* February 3 and 10, 2007: [http://mri.radiology.uiowa.edu/mediawiki/index.php/ITK_Programming_Short_Course_-_Feb_2007 Iowa ITK Programming Short Course]<br />
* February 7-8: [http://www.slicer.org/slicerWiki/index.php/Slicer3:MiniRetreat Slicer3 Mini-Retreat, Boston]<br />
----<br />
* January 29: [[P41-2007-Joint-Retreat | CFIT NAC P41 2007 Joint Retreat]]<br />
* January 16: [[2007-01-16 Core 5, Core 6 Summit]]<br />
* January 10-12: '''[[AHM_2007|AHM, EAB, Winter Project Half Week in Salt Lake City]]'''<br />
<br />
== 2006 ==<br />
* December 12: [http://www.slicer.org/slicerWiki/index.php/Slicer3:Alpha-release Slicer3 retreat at Kitware]<br />
----<br />
* November 15: [http://www.slicer.org/slicerWiki/index.php/Slicer3:Usability Usability session with PNL at BWH]<br />
* November 7-8: [[2006_November_Meshing_Project_Visit| Meshing Collaborator Project Visit to BWH]]<br />
* November 1: [[Training:User_Workshop_Fall_HCNR_2006| NA-MIC Training Workshop at the Harvard Center for Neurodegeneration and Repair, Boston.]]<br />
----<br />
* October 26: [[Oct-26-2006-MIND-visit_Visiting_the_MIND_institute|New DBP MIND Institute Visit]]<br />
* October 23-26: [http://www.nbirn.net/press/current/ahm2006.shtm <nowiki>| BIRN All Hands Meeting</nowiki>]<br />
* October 19-20: [[IGT:October_2006_IGT_Workshop| NCIGT and NA-MIC Workshop on Open System Architectures for Image-Guided Therapy]]<br />
* October 17: [[Core1-3-meeting-2006|Coordination meeting]] between Core 1 and Core 3 to plan the specifics for the third and last year of the current DBP's<br />
* October 1: [http://www.insightsoftwareconsortium.org/wiki/index.php/2006_MICCAI_Open_Workshop MICCAI_2006 Open Source Workshop at MICCAI 2006, Copenhagen]<br />
----<br />
* September 19-20: [[2006_September_Slicer3_Update| Slicer 3 Update Meeting in Boston]]<br />
* September 14-15: We have been invited to participate in [http://usms.nist.gov/workshops/bioimaging.htm NIH Workshop on Standards in Change Measurement]. This workshop will potentially set the stage for additional workshops that focus on Image Guided Interventions and Open Source standards.<br />
* September 6: [http://www.ibmisps.org/pdf/InformationparticipantsANGLAIS.pdf 2006 IBMISPS conference:] [[Media:Kikinis-IBMISPS-09-06-2006.ppt|talk]] by [[media:Kikinis-FOSS.ppt|R. Kikinis on FOSS]] ([[2006 FOSS Abstract Kikinis]])<br />
----<br />
* July 19: [[Training:NLM_Workshop_2006| NA-MIC Training Workshop at NLM]]<br />
* July 17-19: [[NIH:_2006_All_NCBC_Meeting| All NCBC All Hands Meeting at NIH]]<br />
* July 13-14: [http://bsp.csie.nctu.edu.tw/lssa06/ 2nd IEEE-NLM International Life Science Systems and Applications Workshop, Lister Hill Auditorium, NIH, chaired by Stephen Wong, co-sponsored by IEEE, NLM, and NAMIC]<br />
* July 2: Ron Kikinis [[Media:NA-MIC-Kit-07-01-2006.ppt| presentation]] (28MB ppt file) at the [http://www.future-cad.org/fcad/Docs/CFP_for_2nd_Int_Sympo_2006_ver3.2.pdf The 2nd International Symposium on Intelligent Assistance in Diagnosis of Multi-Dimensional Medical Images ]<br />
----<br />
* June 26-30: '''[[2006_Programming/Project_Week_MIT|Summer Project Week at MIT]]'''<br />
* June 8-9: [[Georgia_Tech_visit_to_UNC%2C_June_8-9|Georgia Tech visit to UNC: Shape Analysis Discussion]]<br />
* June 5: [http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer3-June-5-2006-Retreat Slicer 3 Retreat]<br />
----<br />
* May 30: [http://www.cimit.org/forum/forum.html CIMIT Forum] with Steve Pieper and Luis Ibanez ([[Media:CIMIT-BIRN-update-2006-05-30.ppt| Steve's Slides]])([[Media:CIMIT-2006-IGSTK-InsightJournal.ppt| Luis' Slides]])<br />
* May 26: [[Training:DTI_Workshop|UNC-Chapel Hill NA-MIC DTI Analysis Training Workshop]]<br />
* May 23-24: [[Algorithms:Core1Visit_May06| NA-MIC Core 1 meeting at UNC]]<br />
* May 19: [[Slicer:StevePieper_RonKikinis_VisitToDartmouth_051906|Steve Pieper and Ron Kikinis Visit to Dartmouth]]<br />
* May 15: [[DBP:Harvard:Collaboration:GTech#Progress|Delphine Nain at the PNL]]<br />
----<br />
* April 27: [[Training:NIH_Workshop_2006|NA-MIC Training Workshop at NIH]]<br />
* April 24: [http://www.nimh.nih.gov/neuroinformatics/springagenda2006.cfm The Human Brain Project: Linking Within and Beyond] Natcher Conference Center, NIH Campus, Bethesda, Maryland: National Alliance for Medical Image Computing: Science & Technology of One National Center for Biomedical Computing [[Media:NA-MIC_Kit_revised.ppt| (this is a slightly modified version of the presentation)]]<br />
* April 12-13: [[DBP:Harvard:Collaboration:Toronto|James Kennedy and Aristotle Voineskos at the PNL]]<br />
* April 10-11: [[Training:MIND_Institute_Workshop_Spring_2006| NA-MIC Training Workshop at MIND Institute, New Mexico]]<br />
* April 10-11: Steve Pieper presented the NA-MIC Kit at [http://www.biomedicalimaging.org ISBI] 2006 on April 7, 2006 ([[Media:NA-MIC-2006-04-07-ISBI.ppt| Slides]], [[Media:Pieper-ISBI-2006-revised.pdf| Paper]]).<br />
* April 3-4: [http://www.slicer.org/slicerWiki/index.php/Slicer3:_Alpha1_Meeting Design Review and Work meeting on Slicer3 (alpha1 release)]<br />
----<br />
* February 22-24: [[Engineering:Slicer3_and_GPU| Meeting at Kitware to discuss Slicer3 (Thursday) and GPU programming (Friday)]]<br />
* February 22: [[DBP:Sylvain_Doug_visit_Dartmouth_Feb_22_2006|Sylvain Bouix to visit Dartmouth]]<br />
* February 20-23: [[IGT:Workshop_Feb_2006|IGT and FUS Workshops]]<br />
----<br />
* January 24: [[Training:User_Workshop_SPL_Winter_HCNR_2005| HCNR User Training Workshop at the Surgical Planning Laboratory, Boston, MA]]<br />
* January 8-13: '''[[AHM_2006:AHM_2006| AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
== 2005 ==<br />
* December 20: [[DBP:Marek_Kubicki_visit_Dartmouth_December_20_2005| Marek Kubicki visit to Dartmouth]]<br />
* December 17: [[Collaboration:GT-UCI| Jim Fallon from UC Irvine visit to Georgia Tech for work on Rule-Based Segmentation]]<br />
* December 14: [[DBP:Andy_Saykin_visit_BWH_December_14_2005|Andy Saykin and Group visit to Brigham and Women's Hospital]]<br />
* December 1: [[DBP:Dartmouth_Harvard_Slicer_Training_12_01_2005| Dartmouth Group Slicer Training Followup at Harvard, 1249 Boylston]]<br />
----<br />
* November 27-December 2: [http://rsna2005.rsna.org/rsna2005/V2005/index.cvn RSNA 2005, Chicago: Slicer session at the Open source imaging tools workshop]<br />
* November 18: [[DBP:Harvard:Collaboration:GTech#Progress|Ramsey Al-Hakim at the PNL]]<br />
* November 17-18: [[Collaboration:GT-Kitware|John Melonakos at Kitware -- Bayesian Classification Filter addition to ITK]]<br />
* November 16: [[IGT:2005_Nov_16_IGT_Consortium_Kickoff| IGT Consortium Kickoff]]<br />
* November 16: [[Collaboration:UNC-UCI|Jim Fallon and Martina from UC Irvine visit to UNC on DTI tools and clinical projects]]<br />
* November 15: [[Engineering:Slicer3.0_November_15_2005| Slicer 3.0 Meeting at Surgical Planning Laboratory, Boston, MA]]<br />
----<br />
* October 29: [[Dissemination:MICCAI_Workshop_2005|ISC and NA-MIC Workshop on Open Source Toolkits, Applications, and their uses in Medical Image Analysis at MICCAI]]<br />
* October 29: Informal NA-MIC Lunch at MICCAI, Palm Springs, CA<br />
* October 20: [[2005_AHM:_3D_Slicer/Freesurfer_Workshop|Slicer Training Workshop, AHM BIRN San Diego, California]]<br />
* October 7: [[Collaboration:UNC-PNL|UNC visit at the Psychiatry NeuroImaging Laboratory]]<br />
* October 5-7: [[Dissemination:EPFL_Workshop_2005|Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland: Advanced ITK and Slicer Workshop]]<br />
----<br />
* September 30: [[Training:User_Workshop_SPL_Fall_2005|User Training Workshop in the Surgical Planning Laboratory, Boylston St, Boston, MA]]<br />
* September 26-28: [[Engineering:Core_3_Programming_Week#1_Feedback|DBP and Engineering Session on Feedback from Programming Week Projects, and Planning the next 6-months]]<br />
* September 16: [[Training:User_Workshop_MGH_Summer_2005| User Training Workshop at MGH]]<br />
----<br />
* August 11: [[Dissemination:CSB2005|Invited Lecture about NA-MIC.]]<br />
----<br />
* July 20: [[Collaboration:Workshop_July_20_2005|UNC visit of Georgia Tech for collaborative work on shape and DTI algorithms]]<br />
----<br />
* June 27-July 1: [[Engineering:Programmers_Week_Summer_2005| '''Summer Project Week at MIT''']]<br />
* June 22-23: [[Dissemination:NCRR_NIBIB_PI_Meeting_June_22-23_2005|NCRR/NIBIB PI Meeting]]<br />
* June 16-19: [[Collaboration:Workshop_June_16-19_2005|Georgia Tech visit of UC-Irvine for collaborative work on anatomically accurate algorithms.]]<br />
----<br />
* May 26-27: [[Dissemination:Workshop_May_26-27_2005|User Training and Dissemination Workshop at Dartmouth]]<br />
----<br />
* April 21-22: [[DBP:Andy_Saykin_visit_BWH_April_21_2005| Andy Saykin visit to Brigham and Women's Hospital and MIT]]<br />
----<br />
* March 25: University of Utah visit of Harvard VA for collaborative work on DTMRI.<br />
* March 21-23: [[FBIRN:retreat2005|fBIRN Retreat in Irvine with User Tutorials for Slicer, Brains2 Wednesday on March 23]]<br />
----<br />
* February 20-22: [[AHM_2005:Main|'''The First All-Hands-Meeting and Programming Event in Salt Lake City, Utah''']]<br />
* February 17-18: [[Dissemination:Workshop_Feb17-18_2005| Dissemination Workshop at UCSD]]<br />
----<br />
* January 26: Slicer User Workshop at BWH: [http://www.slicer.org/slicerWiki/index.php/Slicer:User_Workshop_Jan26 Information for Atendees]<br />
* January 24-25: Dissemination Workshop at [[Dissemination:Workshop_Jan24-25_Boston|Agenda]], [[Dissemination:Workshop_Jan2005_Interested_Attendee_List|List of Participants]], [[Talk:Dissemination:Workshop_Jan24-25_Boston_Feedback|Attendee Feedback]]<br />
* January 17-18: [http://www.imaginggenetics.uci.edu First International Imaging Genetics Conference] at the Beckman Center of the National Academy of Sciences in Irvine, CA.<br />
<br />
== 2004 ==<br />
<br />
* December 9-10: Dissemination Workshop in the Surgical Planning Laboratory, BWH: [[Dissemination:Workshop_Dec9-10_Boston|Agenda]], [[Dissemination:Workshop_Dec9-10_Boston_Presentations|Presentations]], [[Dissemination:Workshop_Dec9:10_Attendees_List|List of Participants]], [[Dissemination:Workshop_Dec9:10_Summary|Summary]], [[Talk:Dissemination:Workshop_Dec9-10_Boston_Feedback|Attendee Feedback]]<br />
----<br />
* November 16: Dissemination Meeting: [[Dissemination:Kickoff_Agenda|Agenda]], [[Dissemination:Kickoff_Summary|Summary]]<br />
----<br />
* October 15: [[Kickoff:Main| NA-MIC Kickoff Meeting]]<br />
<br />
=Testing Google Calendar=<br />
<br />
[http://www.google.com/calendar/embed?src=r8bddigidepgvog24cpfk1bjgs%40group.calendar.google.com&ctz=America/New_York NA-MIC Calendar on Google]</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=Events&diff=83057Events2013-08-01T18:01:37Z<p>Dchamberlain: /* 2014 */</p>
<hr />
<div>__TOC__<br />
== Introduction ==<br />
{| border="00" cellpadding="8" cellspacing="0" <br />
|-<br />
| rowspan="2"| NA-MIC organizes a variety of events. The engineering core holds a weekly telephone conference. Workshops address specific research focus areas. Training events aim at training NA-MIC participants and outsiders in NA-MIC technologies. Project weeks are intended for making progress in a variety of projects. The majority of NA-MIC events are hands-on and open to collaborators and interested scientists.<br><br />
If you want to get going with Slicer, go to the list of past events and look for the most recent one-day workshop or tutorial.<br />
| style="background: #ebeced" colspan="2" align="center"| <b>Example of a Training Event</b><br />
|-<br />
| style="background: #ebeced"| [[Image:RSNA2011.jpg|250px]]<br />
| style="background: #ebeced"| The RSNA 2011 training workshop in full swing. For more information about the workshop, please click [http://www.na-mic.org/Wiki/index.php/RSNA_2011 here].<br />
|}<br />
<br />
== [[TCON:Main|'''Telephone Conferences''']] ==<br />
== Upcoming Events ==<br />
<br />
== 2013 ==<br />
*'''August 1-2''': [[BRAINS_CAMP| BRAINSCamp workshop, Iowa City, Iowa]]<br />
*'''August 5''': [[AAPM 2013 | 3D Slicer User Group at AAPM 2013, Indanapolis, IN]]<br />
*'''September 11''': [[WFNS2013| Invited lecture at the 15th WFNS World Congress of Neurosurgery, Seoul, Korea]]<br />
*'''September 22''': [[MICCAI2013| MICCAI 2013 DTI Tractography Challenge on Peritumoral White Matter Anatomy for Neurosurgical Decision-Making]]<br />
*'''September 26''': [http://www.dkfz.de/en/mbi/ctk-miccai2013/index.html MICCAI 2013 CTK Tutorial]<br />
*'''September 29''':[[Beijing_2013| 3D Slicer invited workshop, PLA Hospital, Beijing, China]]<br />
*'''September 30''':[[Changchun_2013| 3D Slicer invited seminar, Changchun, China]]<br />
----<br />
*'''December 1-6''': [http://rsna.org/annual_meeting_2013.aspx RSNA 2013, Chicago, Il]<br />
<br />
== 2014 ==<br />
*'''January 6-10:''' [[2014_Winter_Project_Week|'''Winter Project Week in Salt Lake City]]'''<br />
*'''February 19-20:''' [[Second Medical Image Registration Retreat| Puerto Rico]]<br />
<br />
== Standing Events ==<br />
* [[TCON:Main|A list of all upcoming and past teleconferences is available here]]<br />
* [[Engineering:Programming_Events|Hands on Project Events]]<br />
* [http://www.slicer.org/slicerWiki/index.php/Slicer:Developer_Meetings Slicer developer meetings are here]<br />
* [[Event:Journal Club at BWH|Journal Club at BWH]]<br />
<br />
== Past Events ==<br />
==2013==<br />
*'''July 19''': [[Dr.Dhenain's visit to the SPL, Boston, MA]]<br />
*June 26-29: [[CARS2013| 3D Slicer hands-on workshop on Image-Guided Therapy and joint Slicer/CTK/MITK workshop, CARS 2013, Heidelberg, Germany]]<br />
*June 17-21: [[2013_Summer_Project_Week|'''Summer Project Week at MIT]]''', [[2013_Tutorial_Contest|Summer 2013 Tutorial Contest]]<br />
*June 14: [[UAEM_Visit|Prof. Avila-Vilchis and Prof. Vilchis-Gonzales visiting the SPL]]<br />
*June 14: [[BWH_2013| 3D Slicer Hands-on Workshop, Surgical Planning Lab, 1249 Boylston St., Boston, MA]]<br />
----<br />
*May 31: [[AAPM_New_England_Chapter_Summer_Meeting| Invited Lecture at the AAPM Chapter New England Summer Meeting, Portsmouth, NH ]]<br />
*May 20-24: [http://www.commontk.org/index.php/CTK-Hackfest-May-2013 CTK Hackfest], Kingston, Ontario, Canada<br />
*May 24: [[Kitware_Course| 3D Slicer: Visualize and Analyze your datasets, Kitware Training Course,]] Lyon, France. <br />
*May 11: [http://www.youtube.com/watch?v=9t1V-Ro0Cak SlicerIGT hands-on demo], Science Rendezvous, Kingston, Ontario, Canada<br />
----<br />
*April 22: [[2013_ISMRM_CardiacStudyGroup_CARMA|ISMRM 2013 Cardiac Study Group Tutorial]]: Slicer for segmentation and enhancement quantification in cardiac LGE-MRI. Salt Lake City, Utah.<br />
*April 10-11: [http://www.na-mic.org/Wiki/index.php/Iwate_2013_Training Slicer Ultrasound Workshop], Iwate, Japan<br />
*April 9: [http://www.na-mic.org/Wiki/index.php/Tokyo_2013_Training Slicer Workshop], Tokyo, Japan<br />
*April 8: [[Imaging_in_Neuroscience| Imaging in Neuroscience Course]], Boston<br />
----<br />
*March 21-23: [http://www.ncigt.org/pages/IGT_Workshop_2013 6th NCIGT and NIH Image Guided Therapy Workshop] in Crystal City, VA<br />
*March 11: [[CIR_visit_Vienna_Medical_Center | Slicer lecture at the Computational Image Analysis and Radiology laboratory, Medical University, Vienna]]<br />
*March 11: [[SlicerRT_workshop | SlicerRT workshop, Medical University, Vienna]]<br />
*March 8: [http://www.na-mic.org/Wiki/index.php/Autoseg_2013 Automatic Segmentation Algorithm Workshop, Boston, MA, USA]<br />
*March 7-11: [http://www.na-mic.org/Wiki/index.php/ECR_2013 European Congress of Radiology, Vienna, Austria]<br />
*March 4: [[2013-03-4- TWMU_Visit| Delegates from Research Administration Office at Tokyo Women's Medical University visits SNR Lab/NCIGT and AMIGO]]<br />
*February 28-March 5: [[2013_Dr_Chen_Visit | Visit of Dr. Xiaolei Chen, PLA General Hospital, Beijing at the SPL]]<br />
----<br />
*February 22: [[2013-02-22 Dr. Takahashi's Visit to SNR Lab/NCIGT and AMIGO|Dr. Takahashi's Visit to SNR Lab/NCIGT and AMIGO]]<br />
*February 14: [[2013-02-14-Slicer_Demo_at_Memorial_Sloan_Kettering_Cancer_Center | Demo the Slicer segmentation and registration tools at the Memorial Sloan Kettering Cancer Center]]<br />
*February 14: [[2013-02-14-Korean_Surgical_Robot_Research_Team_Visit | Surgical Navigation and Robotics Laboratory hosts a robotic surgery research group from Korea]]<br />
*February 9-14: [http://www.na-mic.org/Wiki/index.php/SPIE_2013_DTI_Workshop SPIE 2013 Diffusion Tensor Imaging Course, Orlando, FL] <br />
*February 7: [[2013-02-07-MGH_Slicer_user_meeting | Slicer user/developer meeting with the MGH user group]]<br />
----<br />
*January 31: [[GolbyLabMeeting_DTIChallenge | MICCAI DTI Challenge Presentation at Golby Lab Meeting, Brigham and Women's Hospital]]<br />
*January 28: [http://www.assembla.com/wiki/show/slicerrt/20130128_slicer_matlab_personal_cloud_meeting Slicer Matlab personal cloud meeting]<br />
*January 7-11: [[AHM_2013|'''AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
==2012==<br />
*December 10: [[ PNL_2012 | PNL Slicer4 Training Workshop]]<br />
*December 3: [[HST_2012 | Harvard-MIT Division of Health Science and Technology - Diffusion Tensor Imaging Course]]<br />
----<br />
*November 25-30: [[RSNA_2012 | 98th Annual Meeting of the Radiological Society of North America (RSNA 2012), Chicago IL]]<br />
*November 14: [[CMF_Workshop_Cleveland_2012| 3D Cranio Maxillo Facial workshop, CWRU Cleveland, OH]]<br />
*November 8-9: [http://meetings.nigms.nih.gov/index.cfm?event=general&ID=15208 NCBC showcase event in Washington DC]: [[media:NA-MIC-Overview-2012-11.pdf|PDF of the overview slides]]<br />
----<br />
* October 8: [[Niguarda_Ospedale_Visit| Invited visit to the Epilepsy and Parkinson Surgery Centre "Claudio Munari" Ospedale Niguarda "Ca' Granda", Milan, Italy]]<br />
* October 1: [[DTI_Tractography_Challenge_MICCAI_2012| DTI Tractography Challenge, MICCAI 2012, Nice, France]]<br />
* October 1: [http://www.sci.utah.edu/stia2012-home.html 2nd International MICCAI Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data (STIA'12), MICCAI 2012, Nice, France]<br />
----<br />
* September 25-26: [[Pieper-MeVis-2012-09| Steve Pieper visited MeVis]] <br />
* September 20: [[DrShekhar_Visit_Sep_2012|Dr. Raj Shekhar's visit to NCIGT]]<br />
* September 12: [[Universidad Autonoma del Estado de Mexico Symposium | 3DSlicer invited lecture at the First Symposium on Medical Bioengineering, Universidad Autónoma del Estado de México, Mexico City, Mexico]]<br />
* September 10:''' [[HST_583_2012| Harvard-MIT Division of Science Health and Technology HST.583 - Neuroimage Analysis Lab]]<br />
----<br />
* August 29: [[BU_Slicer4_Training_Session| BU Slicer4 Training session]]<br />
* August 20: [[Slicer4.2Planning|Slicer 4.2 Planning meeting]]<br />
* August 20-21: [[Core 1 Retreat 2012|Core 1 Retreat 2012 in Park City, UT]]<br />
----<br />
* July 30: [[AAPM_2012 | 3D Slicer User Group at AAPM, Charlotte, NC]]<br />
* July 9-13: [http://www.commontk.org/index.php/CTK-Hackfest-Jul-2012 CTK Hackfest, Boston, USA]<br />
----<br />
* June 30: [[CARS_2012 | NA-MIC IGT Workshop, CARS 2012]] <br />
* June 18-22: [[2012_Summer_Project_Week|'''Summer Project Week at MIT''']]; [[2012_Tutorial_Contest| Summer 2012 Tutorial Contest]]<br />
----<br />
* May 21-22: [[Madrid-May-21-2012-Slicer-Workshop| Slicer workshop in Madrid, ES]] <br />
* May 16: [http://www.ias.uwa.edu.au/lectures/kikinis| Public lecture, UWA, Perth, AU] <br />
* May 14: [http://www.ias.uwa.edu.au/masterclass/kikinis Masterclass, UWA, Perth, AU]<br />
* May 2: [http://www.hisa.org.au/events/event_details.asp?id=224112 Slicer workshop at St Vincent's Hospital in Fitzroy, Melbourne, AU]<br />
----<br />
* April 30-May 1: [http://www.cs.ucl.ac.uk/opensource_mia_ws_2012/ Slicer presentation at the International Symposium on Biomedical Imaging (ISBI 2012), Barcelona, Spain]<br />
* April 26: [http://www.hisa.org.au/events/event_details.asp?id=224111 Slicer workshop at St. Vincent Hospital in Sydney, AU] <br />
* April 5: [[NEU-Medical-Physics-Seminar| Northeastern University Medical Physics Seminar, Gregory Sharp, Nobuhiko Hata]]<br />
----<br />
* March 20-21: [[Iowa-March-20-2012-Slicer-Workshop| Slicer workshop in Iowa]] <br />
* March 16: [[Particle_UNC_Utah| Particle training seminar, UNC Chapel Hill, NC]]<br />
* March 5-6: Slicer booth presentation at the annual [https://wiki.nci.nih.gov/display/CIP/QIN Quantitative Imaging Network] face-to-face meeting; NCI, Washington DC<br />
----<br />
* February 27: [[Slicer-4.1| Plans for Slicer 4.1]]<br />
* February 29: [[Chapel-Hill-February-29-2012-Slicer-Talk| Slicer talk at UNC]] <br />
* February 14: [[TWMU_Medtronics_OpenIGTLink| TWMU Open IGT Link - Stealth station Project, Kick-off, Tokyo, Japan]]<br />
* February 5: [[SPIE_2012_DTI_Workshop| SPIE 2012 DTI Course, San Diego, CA]]<br />
----<br />
* January 9-13: [[AHM_2012|'''AHM, EAB, Winter Project Week in Salt Lake City''']]<br />
<br />
== 2011 ==<br />
*November 27-December 2: [[RSNA_2011 | 97th Annual Meeting of the Radiological Society of North America (RSNA 2011), Chicago IL ]]<br />
*November 14-18: [http://www.commontk.org/index.php/CTK-Hackfest-Nov-2011 CTK Hackfest, Sophia Antipolis, France]<br />
*November 11: [[SFN2011 Diffusion_Tensor_Imaging_Analysis Workshop |White Matter Exploration with Diffusion Tensor Imaging: Fundamentals and Perspectives - SFN 2011 Workshop, Washington DC]]<br />
*November 9: [[CMF_Workshop_Cleveland| 3D Cranio Maxillo Facial workshop, CWRU Cleveland, OH]]<br />
*November 3: [[2011_Slicer4-PreRSNAHackFest|Slicer4 PreRSNA Hackfest, Google hangouts]]<br />
*November 2: [[BWH_Resident_Fair| 3DSlicer exhibit at the BWH Resident Fair, Boston, MA]]<br />
----<br />
*October 20: [[2011_Slicer4-Documentation-Sprint|Slicer4 Documentation Sprint]]<br />
*October 14-15: [[2011_Algorithms_Retreat|Algorithm Core Retreat in New England]]<br />
*October 12-13: [http://www.ncigt.org/pages/IGT_Workshop_2011 NCIGT Workshop in DC]<br />
----<br />
*September 28: [http://wiki.na-mic.org/Wiki/index.php/Event:Journal_Club_at_BWH Journal Club talk: Seyed-Ahmad Ahmadi]<br />
*September 26-28: [[Events:2011_Hungary_Slicer_Training|Programming and End-User Training in Szeged Hungary]]<br />
*September 18: '''[http://www.na-mic.org/Wiki/index.php/Events:_DTI_Tractography_Challenge_MICCAI_2011 DTI Tractography for Neurosurgical Planning: A Grand Challenge - MICCAI 2011 Workshop, Toronto, Canada]'''<br />
----<br />
*August 4: [[Events:UBC_3D_Slicer_workshop_August_2011|UBC 3D Slicer workshop August 2011]]<br />
*August 2: [[Events:2011-08-02-AAPM-Slicer-Users-Group-Meeting|3D Slicer users group meeting at AAPM annual meeting in Vancouver BC]]<br />
----<br />
*July 19-21: [[Events:Slicer4-Review-07-2011 | Slicer 4 Review and Programming Sprint, 1249 Boylston St., Boston, MA]]<br />
----<br />
*June 26-30: [[Events:3DSlicer_Booth_OHBM_2011 | 3DSlicer Booth, OHBM 2011, Quebec City, Canada]]<br />
*June 20-24: [[2011_Summer_Project_Week|'''Summer Project Week at MIT''']]<br />
*June 15: [[Events:2011-06-15-Robarts-Slicer-Workshop|Slicer Workshop at the Biomedical Imaging Research Centre at the University of Western Ontario]]<br />
*June 13: [http://www.na-mic.org/Wiki/index.php/Summer_2011_Tutorial_Contest Summer 2011 Tutorial Contest] Submission dead-line.<br />
*June 7: [[Events:2011-06-07-UCSF-Diffusion-Imaging-Workshop|UCSF Diffusion Imaging Workshop, San Francisco]]<br />
----<br />
*May 5: [[Events:Computational_Methods_for_Radiation_Oncology|Computational Methods for Radiation Oncology, Boston]]<br />
----<br />
*April 27: [[Events:Slicer-Hands-On-Hiroshima-2011|Slicer and OpenIGTLink Hands-on Training, Hiroshima, Japan]]<br />
*April 22: [[Event:2011-04-UtahDBP-Training|Slicer Hands-on Training For The Utah Afib Team]]<br />
*April 12: [[Event:2011-04-DiMaioTalk|Talk by Simon DiMaio "da Vinci and Beyond"]]<br />
*April 5: [http://www.na-mic.org/Wiki/index.php/Events:_Johns_Hopkins_University_Seminar_April_2011 Training Workshop at Johns Hopkins University]<br />
----<br />
*March 16-18: [http://vizbi.org VIZBI 2011] in Cambridge, MA includes NAMIC-affiliated speakers and VTK tutorials.<br />
*March 15-16: [http://catalyst.harvard.edu/services/ittm/module1.html Harvard Catalyst Biomarkers and Imaging in Drug Development course] includes [[media:Pieper-Image Processing Strategies.pptx|a presentation on image processing approaches]] including NA-MIC and 3D Slicer.<br />
*March 11: [[CTSC:Slicer_handson.021810| 3D Slicer Quantitative Medical Image Data Visualization Hands-On Workshop, Countway room 403, (12-1pm)]] <br />
*March 4: New [http://www.slicer.org/slicerWiki/index.php/Slicer3:3.6_Final_Issues#DONE:_Issues_fixed_for_inclusion_in_Slicer_3.6.3_--_included_in_release_builds_of_March_4.2C_2011 Slicer3.6.3 Patch Release]<br />
----<br />
*February 19-23: [[Event:2011_Registration_Retreat|Registration Retreat]]<br />
*February 18: [[CTSC:Slicer_handson.021810| 3D Slicer Quantitative Medical Image Data Visualization Hands-On Workshop]] Harvard Countway Library room 403, (12-1pm)<br />
*February 7-11: [http://www.commontk.org/index.php/CTK-Hackfest-Feb-2011 CTK Hackfest in Chapel Hill, NC]<br />
*February 4: [[Media:Fedorov-MGH-4Feb2011.pdf|Presentation of 3D Slicer for the MGH tumor measurement group]]<br />
----<br />
*January 10-14: '''[[AHM_2011|AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
== 2010 ==<br />
*December 6-7: [[Events:Dundee-Dec-2010|Slicer workshop in Dundee, UK]]<br />
*December 8: [[Events:Manchester-Dec-2010|Slicer workshop in Manchester, UK]]<br />
----<br />
*November 28-December 3: RSNA 2010, The 96th Annual Meeting of the Radiological Society of North America, Chicago IL<br />
**November 29: 2:30 pm-4:00 pm: [[Events:RSNA_2010| 3D Interactive Visualization of DICOM images with Slicer]]<br />
**November 30: 10:30 am-12:00 pm: [[Events:RSNA_2010_CTSA| Quantitative Medical Imaging for Clinical Research and Practice]]<br />
**December 2: 10:30 am-12:00 pm: [[Events:RSNA_2010_didactic| Lifecycle of an imaging biomarker: from validation to dissemination]]<br />
* November 17-18: [[EngineeringRetreat2010|Engineering Core retreat]]<br />
* November 12: [[MGH-NA-MIC-2010-Kickoff|MGH Kick-off meeting with Algorithms and Engineering]]<br />
* November 8-9: [[2010-WestCoastMaster|West Coast Events]]<br />
* November 5-6: [[AlgorithmRetreat2010|Algorithm Core retreat]]<br />
* November 4-6: [[WidgetDesign2010|Widget Design Fiesta, Kitware, South Carborro, NC]]<br />
* November 4-5: [[media:HataJJTalkNov2010.pdf |Robotics Presentation by Dr. Noby Hata at Advances in Surgical Technologies Symposium, Celebration, FL]]<br />
----<br />
* October 25-26: [[Iowa-NA-MIC-2010-Kickoff| Iowa NA-MIC Kickoff meeting (UNC Core 1 visit)]]<br />
* October 18:[[HST_583_2010_DTI_Course| Harvard MIT Division of Health Sciences and Technology - Diffusion Tensor Imaging Lab]] <br />
----<br />
* September 24: [http://lcib.rutgers.edu/miccai2010/ Prostate Cancer Imaging Workshop at MICCAI in Beijing, China ]<br />
* September 23: [http://www.grand-challenge.org/index.php/MICCAI_2010_Workshop Workshop on Medical Image Analysis for the Clinic - A Grand Challenge] <br />
* September 23: [[Beijing_2010_NA-MIC_Workshop|Slicer Tutorial at Chinese PLA General Hospital in Beijing, China]]<br />
* September 20: [[MICCAI_2010| NA-MIC Tutorial at MICCAI 2010 in Beijing, China]]<br />
* September 13: [[HST_583_2010| Harvard MIT Division of Health Sciences and Technology - Neuroimage Analysis Lab]]<br />
----<br />
* August 12-13: [[QtAugust2010| Review of Qt port]]<br />
* August 11: [[2010-Slicer-UNCDuke|Slicer training event at UNC and Duke]]<br />
* August 10: [[2010-Sato-talk|Research retreat of SNR Laboratory, followed by Dr. Yoshinobu Sato's talk]]<br />
* August 5: [http://www.termine-meduniwien.at/mediafiles/38/Vortragsankuendigung_Prof_Ron_KIKINIS_05082010.pdf?sid=4f2a2b592fc7004cea39a34993b1d72d Presentation at the AKH, Vienna]<br />
----<br />
* July 1: [[2010-Slicer-StLouis|Slicer training event in St. Louis]]<br />
----<br />
* June 26: [[2010_CARS| NA-MIC Tutorial at the Computer Assisted Radiology and Surgery Conference in Geneva, Switzerland]]<br />
* June 21-25: '''[[2010_Summer_Project_Week|Summer Project Week at MIT]]'''<br />
* June 18: [[2010_CCA_Retreat|Clinical Computational Anatomy one day retreat in Boston]]<br />
----<br />
* May 20-23:[[cscbce_2010 | 5th Canadian Student Conference <br />
on Biomedical Computing and Engineering]]<br />
* May 17-21: [http://www.commontk.org/index.php/CTK-Hackfest-May-2010 CTK Hackfest at Georgetown University]<br />
* May 12: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Registration Hands-On Workshop] at Countway Library, Harvard Medical School<br />
----<br />
* April 28: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Visualization Hands-On Workshop] at Countway Library, Harvard Medical School<br />
* April 29: [[2010_Slicer36_Module_Cull|Review of modules to keep and cull for the 3.6 release]]<br />
* April 9-10: [[2010_University.of.Iowa| NA-MIC Training Workshop at the University of Iowa ]]<br />
* April 7: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Registration Hands-On Workshop] at Countway Library, Harvard Medical School<br />
----<br />
* March 24: [http://catalyst.harvard.edu/services/imagingcourses.html 3D Slicer Medical Image Data Visualization Hands-On Workshop] at Countway Library, Harvard Medical School<br />
* March 19: [[U-Tokyo-visit-03192010| NCIGT Workshop with delegates from University of Tokyo]] at Brigham and Women's Hospital<br />
* March 16: [[Events:Slicer-Hands-On-Tokyo-2010| Image Guided Therapy research using 3D Slicer - Hands-On Workshop at Tokyo Women's Medical University, Tokyo, Japan (page in Japanese)]]<br />
* March 10: [http://summit2010.amia.org/session-details NA-MIC Presentation at AMIA 2010]<br />
* March 9: Registration Clinic at [http://www.ncigt.org/pages/IGT_Workshop_2010 IGT Workshop, Arlington, VA]<br />
* March 7-10: Several NA-MIC personnel are participating in [[Events:CTK-Pre-Hackfest-2010|The CTK Pre-Hackfest]] in Heidelberg, Germany. This meeting is a kick off that is expected to lead to active working meetings similar to the NA-MIC Project Week activities. The meeting is organized by the [http://commontk.org CTK] group.<br />
* March 3: Steve Pieper presents on "Visualizing Anatomy and Function from MRI Data" at [http://vizbi.org/2010/ the 2010 EMBO Workshop on Visualizing Biological Data]. NA-MIC Wiki page with [[VIZBI2010|Supplemental information from the VIZBI Conference]]. [http://www.nature.com/nmeth/journal/v7/n3s/index.html A special edition of Nature Methods] contains papers by the presenters.<br />
----<br />
* February 24: [[CTSC:Slicer_handson.022410| 3D Slicer Medical Image Data Visualization Hands-On Workshop]] at Countway Library, Harvard Medical School<br />
* February 14: [[Events:CTK-Workshop-SanDiego-2010| 4th CTK workshop]] at SPIE in San Diego, CA<br />
* February 9: [[Hata_BBN_visit|Hata BBN lecture]]<br />
----<br />
* January 4-8: '''[[AHM_2010|AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
==2009==<br />
* December 16-17: [[Dec-2009-SlicerAIMBrainstorming|Slicer Annotation and Markup Brainstorming]]<br />
* December 15: [[Dec-2009-SlicerXND-DesignAndEngineering | Slicer/XND Preliminary Design & Engineering Planning Session at WUSTL]]<br />
* December 1: [[Events:RSNA_CTSA_2009| CTSA at RSNA]]<br />
----<br />
* November 30: [[Events:RSNA_2009| 3-D Interactive Visualization of DICOM images with Slicer - RSNA 2009]] 95th Annual Meeting of the Radiological Society of North America, Chicago, IL<br />
* November 29: [[Events:CTK-Workshop-Chicago-2009| 3rd CTK workshop]] at RSNA in Chicago<br />
* November 23: [[CTSC:Slicer_handson.112309| 3D Slicer Medical Image Data Visualization Hands-On Workshop]], Countway Library, Harvard Medical School, room 403, 12-1pm<br />
----<br />
* October 16: [[SFN2009 Slicer DTI Workshop | Mapping the Brain with Diffusion Tensor Imaging - A Hands-On Workshop]] [http://www.sfn.org/am2009/ Annual Meeting of the Society of Neuroscience, Chicago, IL]<br />
* October 9: [[Events:VT-NAMIC-NCBC-Collaboration-meeting-2009| VirginiaTech-NA-MIC collaboration progress update and planning meeting]], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA<br />
----<br />
* September 30: [[CTSC:ACRIN 09/30/09| Quantitative imaging workshop]] ACRIN fall meeting, Arlington, VA. Workshop in collaboration with Duke University and Johns Hopkins.<br />
* September 25: [[Events:CTK-Workshop-September-2009| 2nd CTK workshop, Oxford UK]]<br />
* September 24: [http://campwww.informatik.tu-muenchen.de/AMIARCS09/doku.php Augmented Environments for Medical Imaging including Augmented Reality in Computer-Aided Surgery (AMI ARCS)] MICCAI 2009 workshop, London, UK. Demonstration of the [[DBP2:JHU:PerkStation | Perk Station]]. One-on-one tutorial available [mailto:lasso@cs.queensu.ca on request].<br />
* September 24: [http://smarts.lcsr.jhu.edu/CAI-Workshop-2009 Systems and Architectures for CAI] MICCAI 2009 workshop, London, UK. Presentation of the [[DBP2:JHU:Roadmap | computer assisted intervention plug-in module for 3D Slicer]].<br />
* September 24: [http://www.cs.ucl.ac.uk/miccai/dmfc Diffusion Modelling and the Fibre Cup] MICCAI 2009 workshop, London, UK. Presentation of the DTI tractography validation pilot study.<br />
* September 20-24: [http://wiki.na-mic.org/Wiki/index.php/2009_prostate_segmentation_challenge_MICCAI Prostate MRI Segmentation Challenge"] at [http://grand-challenge2009.bigr.nl/index.php MICCAI 3D Segmentation in the clinic: a grand challenge].<br />
* September 20: [http://lmi.bwh.harvard.edu/DMRI09 MICCAI 2009 Tutorial in London: Trends in High Angular Resolution Diffusion Imaging and Brain Tissue Modelling]<br />
* September 20: [http://people.csail.mit.edu/pohl/pmmia09.html MICCAI 2009 Workshop: Probabilistic Models for Medical Image Analysis]<br />
* September 20: MICCAI Workshop on Information theoretic similarity measures for image registration and segmentation<br />
* September 16-17: [[Sept-2009-SlicerWidgetsBrainstorm|Brainstorming Session on next generation widgets for Slicer]]<br />
----<br />
* August 25: [[Events:Slicer_Workshop_August_2009|Slicer Workshop]] at [http://www.ibmisps-worldcongress.org/precongress.asp IBMISPS], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA<br />
* August 21: [[Events:Registration_Summit_August_2009|Registration Meeting]], Surgical Planning Laboratory, 1249 Boylston Street, Boston, MA<br />
----<br />
* June 29: [[Events:CTK-Workshop-June-2009|Common Toolkit Workshop]] at the [http://www.dkfz.de/index.html DKFZ] in Heidelberg, Germany hosted by the [http://www.dkfz-heidelberg.de/en/mbi/index.html MBI].<br />
* June 28: [http://www.biomedicalimaging.org/2009/Tutorial_04.asp Tutorial on Statistical Shape Analysis: Theory, Software, and Applications] at [http://www.biomedicalimaging.org/2009/default.asp ISBI 2009], Boston, MA.<br />
* June 25: [[Events:TutorialContestJune2009 | Summer 2009 Tutorial Contest]]<br />
* June 22-26: '''[[2009_Summer_Project_Week|The FIRST JOINT Summer Project Week at MIT]]'''<br />
* June 17: [[CAOS2009_Slicer Workshop| Hands-On Workshop for Slicer IGT for Computer Aided Orthopeadic Surgery]]<br />
* June 17: [[SlicerKyusyuJune2009Lecture| Lecture and demonstration, Image Guided Therapy of abdominal organs, N Hata, at Kysyu University Medical School, Kyusyu, Japan]]<br />
* June 16: [[SlicerNagoyaJune2009Workshop| Workshop: How to make your custom IGT software using 3D Slicer, N Hata, Nagoya Institute of Technology, Nagoya, Japan]]<br />
----<br />
* May 11-12: Core 1 PI meeting at Georgia Tech.<br />
* May 8: [http://www.na-mic.org/Wiki/index.php/IMFAR2009 IMFAR 2009] - [http://www.autism-insar.org/index.php?option=com_content&task=view&id=36&Itemid=105 Presentation at the 8th Annual International Meeting for Autism Research (IMFAR) in Chicago, IL] entitled Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data".<br />
* May 8: Focus session on [[Volume Rendering and Loadable Modules: (Engineering & Usability Notes)]].<br />
* May 4-5: Core 1 / Core 2 visit at Georgia Tech ([[May 4, 2009 Notes]], [[May 5, 2009 Notes]]).<br />
----<br />
* March 19: [[NCI Slicer Tutorial 03-19-2009|NCI Slicer tutorial, ]] We had to reschedule! New date TBD!<br />
* March 4: [[2009-03-04-Editor-Usability|Interactive Editor usability]] session in Rons office<br />
----<br />
* February 24: 1249 Boylston: [http://www.slicer.org/slicerWiki/index.php/Slicer3:Using3.4 Afternoon session to walk through common Slicer3.4 usage scenarios]<br />
* February 24: BWH (location: Mellins Library) [[BWH_RadiologyResident_Training2009.1| NA-MIC 3D Slicer 3.2 Hands-On Workshop]] <br />
* February 17-20: [[GWE_MiniRetreat|GWE Mini Retreat]], Boston<br />
----<br />
* January 28-30: [http://www.slicer.org/slicerWiki/index.php/Slicer3:MiniRetreat_January_28-30,2009 Slicer3 MiniRetreat]<br />
* January 7: [[Events:TutorialContestJan2009| Winter 2009 Tutorial Contest]] <br />
* January 5-9: '''[[AHM_2009| AHM,]] [[2009_EAB|EAB,]] [[2009_Winter_Project_Week|Winter Project Week in Salt Lake City]]'''<br />
<br />
== 2008 ==<br />
* December 15-16: [[2008_Engineering_review_at_UNC|2008 Engineering review at UNC]], Chapel Hill<br />
* Fall Semester 2008 Ibanez and Schroeder teach [http://public.kitware.com/OpenSourceSoftwarePractice/index.php/Main_Page Open Source Software Course] at Rensselaer Polytechnic Institute<br />
* December 8-12: [[2008_IGT_Project_Week|IGT Hands-on Project Week]], Boston<br />
* December 1: [[Events:RSNA2008| Tutorial at RSNA]], [http://rsna2008.rsna.org/ RSNA conference website]<br />
----<br />
* November 15-19: [[NA-MIC_Lupus_DBP_Worskhop_SFN2008|NA-MIC Lupus DBP White Matter Lesion Tutorial Release at 2008 Society for Neuroscience Annual Meeting, Washington, DC]]<br />
* November 18: [[Slicer3_Q&A_2008-11-18|Slicer Q&A Session at BWH]]<br />
* November 4: [[NA-MIC_3D_Visualization_Workshop_Massachussetts_General_Hospital|NA-MIC 3D Visualization Workshop at Massachusetts General Hospital, Boston, MA]]<br />
----<br />
* October 30 : [[NA-MIC_3D_Visualization_Workshop_Brigham_and_Women's_Hospital| NA-MIC 3D Visualization Workshop at Brigham and Women's Hospital, Boston, MA]]<br />
* October 28: [[Harvard_Medical_Education_Day | Harvard Medical Education Day, Boston, MA]]<br />
* October 15-16: [[Robarts_Training_Session | NA-MIC kit training event at The University of Western Ontario]], London, Ontario, Canada<br />
* October 21: Nobuhiko Hata gave a talk entitled "Role of Image Processing, Navigation and Robots in MRI-guided Intervention", at the Bioimaging Sciences Division, Department of Radiology, Yale University School of Medicine, New Heaven, CT<br />
* October 17: Nobuhiko Hata gave a talk entitled "Role of Image Processing, Navigation and Robots in MRI-guided Intervention", at Robarts Institute, University of Western Ontario, Ontario, Canada <br />
* October 7: [[Stefan_Baumann_visit | Stefan Baumann from Novartis will present at 1249 Boylston]]<br />
* October 7: [[Slicer_Day_October_2008|Slicer in the Fall]], 1249 Boylston, Boston MA<br />
----<br />
* September 10: [[Miccai_2008_Tutorial| Interfacing third-party software with the NA-MIC Kit]]: Tutorial at MICCAI 2008, New York City<br />
* September 10: [[Miccai_2008_Prostate_Workshop| Prostate image analysis and computer-assisted intervention]]: Workshop at MICCAI 2008, New York City<br />
* September 6: [[Miccai_2008_Systems_and_Architecture_Workshop| Systems & architecture for computer a<br />
<br />
== 2007 ==<br />
* December 12-14: [[2007_December_Slicer_IGT_Programming|Slicer IGT Programming Event]]<br />
----<br />
* November 2: [http://www.insightsoftwareconsortium.org/wiki/index.php/2007_MICCAI_Open_Workshop Third Annual Open Source Workshop at MICCAI]<br />
----<br />
* October 16-17: [http://nbirn.net/about/current/ahm2007.shtm BIRN AHM] Query Atlas and Qdec interfaces in Slicer 3 presented at the BIRN AHM.<br />
* October 14-20: [[2007_October_Collaboration_Visit_Robert_Israel|Robert Israel Collaboration Visit to the Surgical Planning Laboratory]]<br />
** [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Module:QueryAtlas See this page] for links to QueryAtlas slides, movies and example datasets.<br />
** [http://wiki.na-mic.org/Wiki/index.php/Image:Slicer3QDEC_AHM2007.ppt See this page] for links to Qdec slides.<br />
* October 1-2: [[SanteFe.Tractography.Conference | Contrasting Tractography Methods Conference, Santa Fe]]<br />
----<br />
* September 12: [[Engineering:September 12, 2007 | Engineering End of Summer Meeting]]<br />
* September 11: [[GPU.Enabled.Tools.Meeting | GPU-enabling of NA-MIC Algorithms, Boston]]<br />
----<br />
* August 21: [[DBP2:UNC:Cortical Thickness Roadmap | UNC DBP Roadmap Tcon]]<br />
----<br />
* June 25-29: '''[[2007_Programming/Project_Week_MIT|Summer Project Week at MIT]]'''<br />
* June 9: [[Training:OHBM2007_Training_Workshop|OHBM DTI Training Workshop, Chicago]]<br />
* June 1: [[2007_Pohl_at_CCB|Pohl Talk at CCB: A Hierarchical Segmentation Algorithm for MR Brain Images]]<br />
----<br />
* May 29-31: [[2007_Core_1_Meeting|Annual Core 1 Workshop, Boston]]<br />
----<br />
* April 24: Steve Pieper presented Slicer3 and the NA-MIC Kit to the [http://gray.mgh.harvard.edu/content/index.php Medical Physics group at MGH] [http://wiki.na-mic.org/Wiki/images/9/9c/Pieper-MGH-medical-physics-2007-04-24.ppt (slides)]<br />
----<br />
* March 29-30: [http://www.slicer.org/slicerWiki/index.php/Slicer3:MiniRetreat_March_29%2C_30%2C_2007 Slicer3 Mini-Retreat, Boston]<br />
----<br />
* February 21-22: Vince Calhoun from MIND is visiting at MIT and MGH [http://www.csail.mit.edu/events/eventcalendar/calendar.php?show=event&id=1349 Talk announecement]<br />
* February 3 and 10, 2007: [http://mri.radiology.uiowa.edu/mediawiki/index.php/ITK_Programming_Short_Course_-_Feb_2007 Iowa ITK Programming Short Course]<br />
* February 7-8: [http://www.slicer.org/slicerWiki/index.php/Slicer3:MiniRetreat Slicer3 Mini-Retreat, Boston]<br />
----<br />
* January 29: [[P41-2007-Joint-Retreat | CFIT NAC P41 2007 Joint Retreat]]<br />
* January 16: [[2007-01-16 Core 5, Core 6 Summit]]<br />
* January 10-12: '''[[AHM_2007|AHM, EAB, Winter Project Half Week in Salt Lake City]]'''<br />
<br />
== 2006 ==<br />
* December 12: [http://www.slicer.org/slicerWiki/index.php/Slicer3:Alpha-release Slicer3 retreat at Kitware]<br />
----<br />
* November 15: [http://www.slicer.org/slicerWiki/index.php/Slicer3:Usability Usability session with PNL at BWH]<br />
* November 7-8: [[2006_November_Meshing_Project_Visit| Meshing Collaborator Project Visit to BWH]]<br />
* November 1: [[Training:User_Workshop_Fall_HCNR_2006| NA-MIC Training Workshop at the Harvard Center for Neurodegeneration and Repair, Boston.]]<br />
----<br />
* October 26: [[Oct-26-2006-MIND-visit_Visiting_the_MIND_institute|New DBP MIND Institute Visit]]<br />
* October 23-26: [http://www.nbirn.net/press/current/ahm2006.shtm <nowiki>| BIRN All Hands Meeting</nowiki>]<br />
* October 19-20: [[IGT:October_2006_IGT_Workshop| NCIGT and NA-MIC Workshop on Open System Architectures for Image-Guided Therapy]]<br />
* October 17: [[Core1-3-meeting-2006|Coordination meeting]] between Core 1 and Core 3 to plan the specifics for the third and last year of the current DBP's<br />
* October 1: [http://www.insightsoftwareconsortium.org/wiki/index.php/2006_MICCAI_Open_Workshop MICCAI_2006 Open Source Workshop at MICCAI 2006, Copenhagen]<br />
----<br />
* September 19-20: [[2006_September_Slicer3_Update| Slicer 3 Update Meeting in Boston]]<br />
* September 14-15: We have been invited to participate in [http://usms.nist.gov/workshops/bioimaging.htm NIH Workshop on Standards in Change Measurement]. This workshop will potentially set the stage for additional workshops that focus on Image Guided Interventions and Open Source standards.<br />
* September 6: [http://www.ibmisps.org/pdf/InformationparticipantsANGLAIS.pdf 2006 IBMISPS conference:] [[Media:Kikinis-IBMISPS-09-06-2006.ppt|talk]] by [[media:Kikinis-FOSS.ppt|R. Kikinis on FOSS]] ([[2006 FOSS Abstract Kikinis]])<br />
----<br />
* July 19: [[Training:NLM_Workshop_2006| NA-MIC Training Workshop at NLM]]<br />
* July 17-19: [[NIH:_2006_All_NCBC_Meeting| All NCBC All Hands Meeting at NIH]]<br />
* July 13-14: [http://bsp.csie.nctu.edu.tw/lssa06/ 2nd IEEE-NLM International Life Science Systems and Applications Workshop, Lister Hill Auditorium, NIH, chaired by Stephen Wong, co-sponsored by IEEE, NLM, and NAMIC]<br />
* July 2: Ron Kikinis [[Media:NA-MIC-Kit-07-01-2006.ppt| presentation]] (28MB ppt file) at the [http://www.future-cad.org/fcad/Docs/CFP_for_2nd_Int_Sympo_2006_ver3.2.pdf The 2nd International Symposium on Intelligent Assistance in Diagnosis of Multi-Dimensional Medical Images ]<br />
----<br />
* June 26-30: '''[[2006_Programming/Project_Week_MIT|Summer Project Week at MIT]]'''<br />
* June 8-9: [[Georgia_Tech_visit_to_UNC%2C_June_8-9|Georgia Tech visit to UNC: Shape Analysis Discussion]]<br />
* June 5: [http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer3-June-5-2006-Retreat Slicer 3 Retreat]<br />
----<br />
* May 30: [http://www.cimit.org/forum/forum.html CIMIT Forum] with Steve Pieper and Luis Ibanez ([[Media:CIMIT-BIRN-update-2006-05-30.ppt| Steve's Slides]])([[Media:CIMIT-2006-IGSTK-InsightJournal.ppt| Luis' Slides]])<br />
* May 26: [[Training:DTI_Workshop|UNC-Chapel Hill NA-MIC DTI Analysis Training Workshop]]<br />
* May 23-24: [[Algorithms:Core1Visit_May06| NA-MIC Core 1 meeting at UNC]]<br />
* May 19: [[Slicer:StevePieper_RonKikinis_VisitToDartmouth_051906|Steve Pieper and Ron Kikinis Visit to Dartmouth]]<br />
* May 15: [[DBP:Harvard:Collaboration:GTech#Progress|Delphine Nain at the PNL]]<br />
----<br />
* April 27: [[Training:NIH_Workshop_2006|NA-MIC Training Workshop at NIH]]<br />
* April 24: [http://www.nimh.nih.gov/neuroinformatics/springagenda2006.cfm The Human Brain Project: Linking Within and Beyond] Natcher Conference Center, NIH Campus, Bethesda, Maryland: National Alliance for Medical Image Computing: Science & Technology of One National Center for Biomedical Computing [[Media:NA-MIC_Kit_revised.ppt| (this is a slightly modified version of the presentation)]]<br />
* April 12-13: [[DBP:Harvard:Collaboration:Toronto|James Kennedy and Aristotle Voineskos at the PNL]]<br />
* April 10-11: [[Training:MIND_Institute_Workshop_Spring_2006| NA-MIC Training Workshop at MIND Institute, New Mexico]]<br />
* April 10-11: Steve Pieper presented the NA-MIC Kit at [http://www.biomedicalimaging.org ISBI] 2006 on April 7, 2006 ([[Media:NA-MIC-2006-04-07-ISBI.ppt| Slides]], [[Media:Pieper-ISBI-2006-revised.pdf| Paper]]).<br />
* April 3-4: [http://www.slicer.org/slicerWiki/index.php/Slicer3:_Alpha1_Meeting Design Review and Work meeting on Slicer3 (alpha1 release)]<br />
----<br />
* February 22-24: [[Engineering:Slicer3_and_GPU| Meeting at Kitware to discuss Slicer3 (Thursday) and GPU programming (Friday)]]<br />
* February 22: [[DBP:Sylvain_Doug_visit_Dartmouth_Feb_22_2006|Sylvain Bouix to visit Dartmouth]]<br />
* February 20-23: [[IGT:Workshop_Feb_2006|IGT and FUS Workshops]]<br />
----<br />
* January 24: [[Training:User_Workshop_SPL_Winter_HCNR_2005| HCNR User Training Workshop at the Surgical Planning Laboratory, Boston, MA]]<br />
* January 8-13: '''[[AHM_2006:AHM_2006| AHM, EAB, Winter Project Week in Salt Lake City]]'''<br />
<br />
== 2005 ==<br />
* December 20: [[DBP:Marek_Kubicki_visit_Dartmouth_December_20_2005| Marek Kubicki visit to Dartmouth]]<br />
* December 17: [[Collaboration:GT-UCI| Jim Fallon from UC Irvine visit to Georgia Tech for work on Rule-Based Segmentation]]<br />
* December 14: [[DBP:Andy_Saykin_visit_BWH_December_14_2005|Andy Saykin and Group visit to Brigham and Women's Hospital]]<br />
* December 1: [[DBP:Dartmouth_Harvard_Slicer_Training_12_01_2005| Dartmouth Group Slicer Training Followup at Harvard, 1249 Boylston]]<br />
----<br />
* November 27-December 2: [http://rsna2005.rsna.org/rsna2005/V2005/index.cvn RSNA 2005, Chicago: Slicer session at the Open source imaging tools workshop]<br />
* November 18: [[DBP:Harvard:Collaboration:GTech#Progress|Ramsey Al-Hakim at the PNL]]<br />
* November 17-18: [[Collaboration:GT-Kitware|John Melonakos at Kitware -- Bayesian Classification Filter addition to ITK]]<br />
* November 16: [[IGT:2005_Nov_16_IGT_Consortium_Kickoff| IGT Consortium Kickoff]]<br />
* November 16: [[Collaboration:UNC-UCI|Jim Fallon and Martina from UC Irvine visit to UNC on DTI tools and clinical projects]]<br />
* November 15: [[Engineering:Slicer3.0_November_15_2005| Slicer 3.0 Meeting at Surgical Planning Laboratory, Boston, MA]]<br />
----<br />
* October 29: [[Dissemination:MICCAI_Workshop_2005|ISC and NA-MIC Workshop on Open Source Toolkits, Applications, and their uses in Medical Image Analysis at MICCAI]]<br />
* October 29: Informal NA-MIC Lunch at MICCAI, Palm Springs, CA<br />
* October 20: [[2005_AHM:_3D_Slicer/Freesurfer_Workshop|Slicer Training Workshop, AHM BIRN San Diego, California]]<br />
* October 7: [[Collaboration:UNC-PNL|UNC visit at the Psychiatry NeuroImaging Laboratory]]<br />
* October 5-7: [[Dissemination:EPFL_Workshop_2005|Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland: Advanced ITK and Slicer Workshop]]<br />
----<br />
* September 30: [[Training:User_Workshop_SPL_Fall_2005|User Training Workshop in the Surgical Planning Laboratory, Boylston St, Boston, MA]]<br />
* September 26-28: [[Engineering:Core_3_Programming_Week#1_Feedback|DBP and Engineering Session on Feedback from Programming Week Projects, and Planning the next 6-months]]<br />
* September 16: [[Training:User_Workshop_MGH_Summer_2005| User Training Workshop at MGH]]<br />
----<br />
* August 11: [[Dissemination:CSB2005|Invited Lecture about NA-MIC.]]<br />
----<br />
* July 20: [[Collaboration:Workshop_July_20_2005|UNC visit of Georgia Tech for collaborative work on shape and DTI algorithms]]<br />
----<br />
* June 27-July 1: [[Engineering:Programmers_Week_Summer_2005| '''Summer Project Week at MIT''']]<br />
* June 22-23: [[Dissemination:NCRR_NIBIB_PI_Meeting_June_22-23_2005|NCRR/NIBIB PI Meeting]]<br />
* June 16-19: [[Collaboration:Workshop_June_16-19_2005|Georgia Tech visit of UC-Irvine for collaborative work on anatomically accurate algorithms.]]<br />
----<br />
* May 26-27: [[Dissemination:Workshop_May_26-27_2005|User Training and Dissemination Workshop at Dartmouth]]<br />
----<br />
* April 21-22: [[DBP:Andy_Saykin_visit_BWH_April_21_2005| Andy Saykin visit to Brigham and Women's Hospital and MIT]]<br />
----<br />
* March 25: University of Utah visit of Harvard VA for collaborative work on DTMRI.<br />
* March 21-23: [[FBIRN:retreat2005|fBIRN Retreat in Irvine with User Tutorials for Slicer, Brains2 Wednesday on March 23]]<br />
----<br />
* February 20-22: [[AHM_2005:Main|'''The First All-Hands-Meeting and Programming Event in Salt Lake City, Utah''']]<br />
* February 17-18: [[Dissemination:Workshop_Feb17-18_2005| Dissemination Workshop at UCSD]]<br />
----<br />
* January 26: Slicer User Workshop at BWH: [http://www.slicer.org/slicerWiki/index.php/Slicer:User_Workshop_Jan26 Information for Atendees]<br />
* January 24-25: Dissemination Workshop at [[Dissemination:Workshop_Jan24-25_Boston|Agenda]], [[Dissemination:Workshop_Jan2005_Interested_Attendee_List|List of Participants]], [[Talk:Dissemination:Workshop_Jan24-25_Boston_Feedback|Attendee Feedback]]<br />
* January 17-18: [http://www.imaginggenetics.uci.edu First International Imaging Genetics Conference] at the Beckman Center of the National Academy of Sciences in Irvine, CA.<br />
<br />
== 2004 ==<br />
<br />
* December 9-10: Dissemination Workshop in the Surgical Planning Laboratory, BWH: [[Dissemination:Workshop_Dec9-10_Boston|Agenda]], [[Dissemination:Workshop_Dec9-10_Boston_Presentations|Presentations]], [[Dissemination:Workshop_Dec9:10_Attendees_List|List of Participants]], [[Dissemination:Workshop_Dec9:10_Summary|Summary]], [[Talk:Dissemination:Workshop_Dec9-10_Boston_Feedback|Attendee Feedback]]<br />
----<br />
* November 16: Dissemination Meeting: [[Dissemination:Kickoff_Agenda|Agenda]], [[Dissemination:Kickoff_Summary|Summary]]<br />
----<br />
* October 15: [[Kickoff:Main| NA-MIC Kickoff Meeting]]<br />
<br />
=Testing Google Calendar=<br />
<br />
[http://www.google.com/calendar/embed?src=r8bddigidepgvog24cpfk1bjgs%40group.calendar.google.com&ctz=America/New_York NA-MIC Calendar on Google]</div>Dchamberlainhttps://www.na-mic.org/w/index.php?title=2013_Summer_Project_Week&diff=828742013 Summer Project Week2013-06-26T13:39:05Z<p>Dchamberlain: /* Agenda */</p>
<hr />
<div> Back to [[Events]]<br />
[[image:PW-MIT2013.png|300px]]<br />
<br />
<gallery widths="800px" heights="300px" perrow="1" caption="Lunch in the Amphitheater at Stata, June 20 2013"><br />
Image:Lunch at Project week IMG 0367.JPG|Shade was a popular commodity<br />
</gallery><br />
<br />
<br />
Dates: June 17-21, 2013.<br />
<br />
Location: MIT, Cambridge, MA.<br />
<br />
<br />
==Summary==<br />
The 17th PROJECT EVENT was held June 17-21,2013 at MIT. It recorded 104 registered attendees, who worked on 75 projects. These attendees represented 22 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, Boston Children’s Hospital, MIT, WPI, WIT, Univ of Alabama, Rochester Institute of Technology, Univ of Utah, Univ of Iowa, Univ of Michigan, UCLA, Rutgers Univ, Univ del Estado de Mexico, Ecole Polytechnique Federale de Lausanne, Zhejiang Univ of Technology, Queen’s Univ, Univ of Sydney, Univ of Western Australia, Univ Sao Paulo, Leibniz Univ Hannover, Univ Magna Graecia of Catanzaro) and 13 companies (NIRAL-UNC, Radnostics, GE Healthcare, GE Global Research, Kitware, zSpace, AZE Technology Inc, IEEE, Medical Science & Computing Inc, Fraunhofer MEVIS, Isomics Inc, IGI Technologies, KUKA Laboratories). The agenda and projects are detailed below.<br />
<br />
<br />
==Agenda==<br />
<br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f" <br />
!style="width:10%" |Time<br />
!style="width:18%" |Monday, June 17<br />
!style="width:18%" |Tuesday, June 18<br />
!style="width:18%" |Wednesday, June 19<br />
!style="width:18%" |Thursday, June 20<br />
!style="width:18%" |Friday, June 21<br />
|-<br />
|<br />
|bgcolor="#dbdbdb"|'''Project Presentations'''<br />
|bgcolor="#6494ec"|'''NA-MIC Update Day'''<br />
|<br />
|bgcolor="#88aaae"|'''IGT and RT Day'''<br />
|bgcolor="#faedb6"|'''Reporting Day'''<br />
|-<br />
|bgcolor="#ffffdd"|'''8:30am'''<br />
|<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|-<br />
|bgcolor="#ffffdd"|'''9am-12pm'''<br />
|<br />
|'''10-11am''' [[2013 Project Week Breakout Session:Slicer4Python|Slicer4 Python Modules, Testing, Q&A]] (Steve Pieper) <br><br />
[[MIT_Project_Week_Rooms|Grier Room (Left)]] <br />
|'''9:30-11pm: <font color="#4020ff">Breakout Session:'''</font><br> [[2013 Project Week Breakout Session: SimpleITK|Slicer and SimpleITK]] (Hans Johnson, Brad Lowekamp)<br />
[[MIT_Project_Week_Rooms#32-D507|32-D507]]<br />
|<br />
'''9:30-10:30am''' [[2013_Tutorial_Contest|Tutorial Contest Presentations]] <br><br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
<br>----------------------------------------<br><br />
'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2013 Project Week Breakout Session: IGT|Image-Guided Therapy]] (Tina Kapur)<br />
[[MIT_Project_Week_Rooms#32-D407|32-D407]]<br />
|'''10am-12pm:''' [[#Projects|Project Progress Updates]] <br><br />
'''12pm''' [[Events:TutorialContestJune2013|Tutorial Contest Winner Announcement]]<br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
|-<br />
|bgcolor="#ffffdd"|'''12pm-1pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|[http://www.na-mic.org/Wiki/index.php/File:NamicToAmphi.png Lunch in Outdoor Amphitheather!]<br />
|bgcolor="#ffffaa"|Lunch boxes; Adjourn by 1:30pm<br />
|-<br />
|bgcolor="#ffffdd"|'''1pm-5:30pm'''<br />
|'''1-1:05pm: <font color="#503020">Ron Kikinis: Welcome</font>'''<br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
<br>----------------------------------------<br><br />
'''1:05-3:30pm:''' [[#Projects|Project Introductions]] (all Project Leads)<br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]<br />
<br>----------------------------------------<br><br />
'''3:30-4:30pm''' [[2013 Summer Project Week Breakout Session:SlicerExtensions|Slicer4 Extensions]] (Jean-Christophe Fillion-Robin) <br><br />
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Room (Left)]]<br />
|'''1-3pm:''' [[Renewal-06-2013|NA-MIC Renewal]] <br>PIs <br>Closed Door Session with Ron<br />
[[MIT_Project_Week_Rooms#32-D407|32-262]] <br />
|<br />
|<br>----------------------------------------<br>'''3-5:30pm: <font color="#4020ff">Breakout Session:'''</font><br> [[2013 Summer Project Week Breakout Session:RT|Radiation Therapy]] (Greg, Csaba)<br />
[[MIT_Project_Week_Rooms#32-D407|32-D407]]<br />
|<br />
|-<br />
|bgcolor="#ffffdd"|'''5:30pm'''<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|<br />
|}<br />
<br />
== '''Projects''' ==<br />
<br />
Please use [http://wiki.na-mic.org/Wiki/index.php/Project_Week/Template this template] to create wiki pages for your project. Then link the page here with a list of key personnel. <br />
<br />
<br />
==Some Stats==<br />
75 Projects, 104 Attendees. First time attendees 25.<br />
<br />
===Huntington's Disease===<br />
* [[Learn and Apply FiberBundleLabelSelect for Huntington's Disease Data]] (Hans, Demian)<br />
* [[Investigate Potential Tensor Computation Improvement via Positive Semi-Definite (PSD) Tensor Estimation]] (Hans)<br />
* [[2013_Summer_Project_Week:SinglePrecisionRegistrationITK| Single Precision Registration]] (Hans, Brad Lowekamp, Dave, Ali Ghayoor)<br />
* [[Dynamically Configurable Quality Assurance Module for Large Huntington's Disease Database Frontend]] (Dave)<br />
* [[DWIConvert]] (Dave, Kent Williams)<br />
* [[Enhance and update SPL atlas]] (Dave, Hans)<br />
* [[Linear Mixed-effects shape model to explore Huntington's Disease Data]] (Manasi, Dave, Josh, Hans, Ross)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
7 projects<br />
<br />
===Traumatic Brain Injury===<br />
* [[Visualization and quantification of peri-contusional white matter bundles in traumatic brain injury using diffusion tensor imaging]] (Andrei Irimia, Micah Chambers, Ron Kikinis, Jack van Horn)<br />
* [[Clinically oriented assessment of local changes in the properties of white matter affected by intra-cranial hemorrhage]] (Andrei Irimia, Micah Chambers, Ron Kikinis, Jack van Horn)<br />
* [[Validation and testing of 3D Slicer modules implementing the Utah segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, Micah Chambers, Guido Gerig, Jack van Horn)<br />
* [[Exploring multi-modal registration for improved longitudinal modeling of patient-specific 4D DTI data]] (Anuja Sharma, Bo Wang, Andrei Irimia, Micah Chambers, Guido Gerig, Jack van Horn)<br />
* [[2013_Summer_Project_Week: A Portable Ultrasound Device for Intracranial Hemorrhage Detection|A Portable Ultrasound Device for Intracranial Hemorrhage Detection]] (Jason White, Vicki Noble, Kirby Vosburgh)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
5 projects<br />
<br />
===Atrial Fibrillation and Cardiac Image Analysis===<br />
* [[2013_Summer_Project_Week:Fibrosis_analysis|Fibrosis distribution analysis]] (Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)<br />
* [[2013_Summer_Project_Week:SegmentationAidedRegistration|Segmentation Aided Registration]] (Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)<br />
* [[2013_Summer_Project_Week:CARMA_workflow_wizard|Cardiac MRI Toolkit LA segmentation and enhancement quantification workflow wizard]] (Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod)<br />
* [[2013_Summer_Project_Week:CARMA_Documentataion|Cardiac MRI Toolkit Documentation Project]] (Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod)<br />
* [[2013_Summer_Project_Week:CARMA_Visualization|LA model visualization]] (Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod)<br />
* [[2013_Summer_Project_Week:CARMA_AutoLASeg|Cardiac MRI Toolkit: Automatic LA Segmentation with Graph Cuts Module]] (Salma Bengali, Alan Morris, Josh Cates, Gopal, Ross Whitaker, Rob MacLeod)<br />
* [[2013_Summer_Project_Week:Sobolev_Segmenter|Medical Volume Segmentation Using Sobolev Active Contours]] (Arie Nakhmani, Yi Gao, LiangJia Zhu, Rob MacLeod, Josh Cates, Ron Kikinis, Allen Tannenbaum)<br />
* [[2013_Summer_Project_Week:Left_Ventricle_Motion_Analysis_using_Tagged_MRI|Left Ventricle Motion Analysis using Tagged MRI]] (Yang Yu, Shaoting Zhang, Dimitris Metaxas)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
8 projects<br />
<br />
===Radiation Therapy===<br />
* [[2013_Summer_Project_Week:Landmark_Registration| Landmark Registration]] (Steve, Nadya, Greg, Paolo, Erol)<br />
* [[2013_Summer_Project_Week:Slicer_RT:_DICOM-RT_Export | SlicerRT: Dicom-RT Export]] (Greg Sharp, Kevin Wang, Csaba Pinter)<br />
* [[2013_Summer_Project_Week:Proton_dose_calculation | Proton dose calculation]] (Greg Sharp, Kevin Wang, Maxime Desplanques)<br />
* [[2013_Summer_Project_Week:Deformable_registration_validation_toolkit | Deformable registration validation toolkit]] (Greg Sharp, Kevin Wang, Andrey Fedorov)<br />
* [[2013_Summer_Project_Week:Deformable_transforms | Deformable transform handling in Transforms module]] (Csaba Pinter, Alex Yarmarkovich, Andras Lasso)<br />
* [[2013_Summer_Project_Week:Brachy_HDR_Ultrasound | Creating DICOM series from ultrasound for prostate HDR brachytherapy]] (Adam Rankin)<br />
* [[Analysis of different atlas-based segmentation techniques for parotid glands]] (Karl Fritscher, Christian Wachinger, Greg Sharp, Matthew Brennan)<br />
* [[2013_Summer_Project_Week:Prostate_radiotherapy_DICOM_communication|DICOM communication between Slicer and Oncentra Prostate radiation therapy planning system]] (Andrey Fedorov, Csaba Pinter, Emily Neubauer-Sugar, Alireza Mehrtash)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
10 projects<br />
<br />
===IGT and Device Integration with Slicer===<br />
* [[2013_Summer_Project_Week:TractAtlasCluster| Tract Atlas and Clustering for Neurosurgery]] (Lauren O'Donnell)<br />
* [[2013_Summer_Project_Week:SlicerIGT_Extension| SlicerIGT extension]] (Tamas Ungi, Junichi Tokuda, Laurent Chauvin)<br />
* [[2013_Summer_Project_Week:Ultrasound_Calibration| Ultrasound Calibration]] (Matthew Toews, Daniel Kostro, William Wells, Stephen Aylward, Isaiah Norton, Tamas Ungi)<br />
* [[2013_Summer_Project_Week:Ultrasound_Needle_Detection| Ultrasound Needle Detection]] (Alireza Mehrtash, Daniel Kostro, Matthew Toews, Tamas Ungi, William Wells, Tina Kapur)<br />
* [[2013_Summer_Project_Week:Liver_Trajectory_Management| Liver Trajectory Management]] (Laurent Chauvin, Junichi Tokuda)<br />
* [[2013_Summer_Project_Week:LabelMapStatistics| Label map statistics]] (Laurent Chauvin, Csaba Pinter)<br />
* [[2013_Summer_Project_Week:PerkTutorExtension| Perk Tutor Extension]] (Matthew Holden, Tamas Ungi)<br />
* [[2013_Summer_Project_Week:Open_source_electromagnetic_trackers_using_OpenIGTLink| Open-source electromagnetic trackers using OpenIGTLink]] (Peter Traneus Anderson, Tina Kapur, Sonia Pujol)<br />
* [[2013_Summer_Project_Week:3D_prostate_segmentation_of_Ultrasound_image| Segmentation of Prostate Gland from 3D US for Prostate Interventions]] (Xu Li, Andriy Fedorov, Tina Kapur, William Wells)<br />
* [[2013_Summer_Project_Week:3D_prostate_registration_of_Ultrasound_image_using_MRI| Registration of an MRI delineated image of the Prostate Gland ot a 3D US for Prostate Interventions]] (Demian Wassermann, Andriy Fedorov, Tina Kapur, William Wells)<br />
* [[2013_Summer_Project_Week:ProstateBRP| MRI-guided robotic prostate interventinos]] (Junichi Tokuda, Greg Fischer, Nirav Patel, Nobuhiko Hata, Clare Tempnay)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
11 projects<br />
<br />
===Chronic Obstructive Pulmonary Disease===<br />
* [[2013_Summer_Project_Week:Airway_Inspector_Porting | Porting Airway Inspector to Slicer 4]] (Raul San Jose, Demian Wassermann, Rola Harmouche, James Ross)<br />
* [[2013_Summer_Project_Week:MRML_Infrastructure_Airway_Inspector | Airway Inspector: Slicer Extension and MRML Infrastructure]] (Demian Wassermann, James, Ross, Rola Harmouche, Raul San Jose)<br />
* [[2013_Summer_Project_Week:Nipype_CLI_Integration | Integration of Nipype with CLI modules in the Chest Imaging Platform Library ]] (Rola Harmouche,Demian Wassermann, Raul San Jose)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
3 projects<br />
<br />
=== '''Additional Collaborations'''===<br />
* [[2013_Summer_Project_Week:VicomTech| VicomTech visit: Imaging solutions and Slicer use]] (Ivan Macia)<br />
* [[2013_Summer_Project_Week:Radnostics |Spine Segmentation & Osteoporosis Detection In CT Imaging Studies]] (Anthony Blumfield, Ron Kikinis)<br />
* [[2013_Summer_Project_Week: Computer Assisted Surgery| Computer Assisted Reconstruction of Complex Bone Fractures]] (Karl Fritscher, Peter Karasev, Ivan Kolesov, Allen Tannenbaum, Ron Kikinis)<br />
* [[2013_Summer_Project_Week:XNAT 3D Viewer| XNAT 3D Viewer]] (Amanda Hartung, Steve Pieper, Daniel Haehn)<br />
* [[2013_Summer_Project_Week:kukarobot| Interface for the integration of a KUKA robot using OpenIGTLink]] (Sebastian Tauscher, Thomas Neff, Junichi Tokuda, Nobuhiko Hata)<br />
* [[2013_Summer_Project_Week:Application of Statistical Shape Modeling to Robot Assisted Spine Surgery | Application of Statistical Shape Modeling to Robot Assisted Spine Surgery]] (Marine Clogenson)<br />
* [[2013_Summer_Project_Week:Robot_Control| Robot Control]] (A.Vilchis, J-C. Avila-Vilchis, S.Pujol)<br />
* [[2013_Summer_Project_Week:Epilepsy_Surgery|Identification of MRI Blurring in Temporal Lobe Epilepsy Surgery]] (Luiz Murta)<br />
* [[2013_Summer_Project_Week:_Is_Neurosurgical_Rigid_Registration_Really_Rigid%3F| Is Neurosurgical Rigid Registration Really Rigid?]] (Athena)<br />
* [[2013_Summer_Project_Week:CMFReg | Cranio-Maxillofacial Registration]] (Francois Budin, Vinicius Boen)<br />
* [[2013_Summer_Project_Week:DTIPipelineExtensions | DTI Analysis Pipeline as Slicer4 Extensions]] (Francois Budin)<br />
*[[2013_Project_Week:WebbasedAnatomicalTeachingFrameworkSummer2013|Web-based anatomical teaching framework]] (Nathaniel Reynolds, Lilla Zollei, Daniel Haehn, Nicolas Rannou, Steve Pieper, Rudolph Pienaar)<br />
* [[2013_Summer_Project_Week:Biomedical_Image_Computing_Teaching_Modules|3D Slicer based Biomedical image computing teaching modules]] (A. Vilchis, J-C. Avila-Vilchis, S. Pujol)<br />
* [[2013_Summer_Project_Week:Analyzing Breast Tumor Heterogeneity Using 3D Slicer|Analyzing Breast Tumor Heterogeneity Using 3D Slicer]] (Sneha Durgapal, Jayender Jagadeesan, Tobias Penzkofer, Vivek Narayan)<br />
* [[2013_Summer_Project_Week:WMH Segmentation for Stroke|WMH Segmentation for Stroke]] (Adrian Dalca, Ramesh Sridharan, Kayhan Batmanghelich, Polina Golland)<br />
* [[2013_Summer_Project_Week:WMQL Integration in Slicer|White Matter Query Language (WMQL) Integration in Slicer]] (Demian Wassermann, Carl-Fredrik Westin)<br />
* [[2013_Summer_Project_Week:Documentation for Slicer 4.2 Data Loading and 3D Visualization|Documentation for Slicer 4.2 Data Loading and 3D Visualization]] (Parth Amin WIT, Matt Flynn WIT, Dr. Pujol HMS, Pr. Jaume WIT)<br />
* [http://wiki.na-mic.org/Wiki/index.php/Projects:WIT_mold_holder 3D Printing of a Prostate Slicer] (Maria Gonzalez-Puente WIT, Dr. Fedorov BWH, Pr. Jaume, WIT)<br />
* [[2013_Summer_Project_Week:WM Geometry Tools|Integration in Slicer of white matter geometry tools]] (Peter Savadjiev, Carl-Fredrik Westin)<br />
<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
19 projects<br />
<br />
==='''Infrastructure'''===<br />
* [[2013_Summer_Project_Week:MarkupsModuleSummer2013| Markups/Annotations rewrite]] (Nicole Aucoin, Ron Kikinis)<br />
* [[2013_Summer_Project_Week:Patient_hierarchy | Patient hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper)<br />
* [[Common resampling and conversion utility functions in Slicer]] (Csaba Pinter, Steve Pieper, Hans, Kevin Wang)<br />
* [[2013_Summer_Project_Week:CLI_Matlab | CLI module implementation in Matlab - without building Slicer or Matlab MEX files]] (Andras Lasso, Jc)<br />
* [[2013_Summer_Project_Week:CLI_Improvements | CLI Improvements (hierarchy nodes, related nodes, roles)]] (Andras Lasso, Csaba Pinter, Jc, Steve, Jim)<br />
* [[2013_Summer_Project_Week:Sample_Data | Sample Data]] (Steve Pieper, Jim Miller, Bill Lorensen, Jc)<br />
* [[ITK -VTK wrapper]] (Paolo Zaffino, Greg Sharp, Steve Pieper)<br />
* [[2013_Summer_Project_Week:CLI_modules_in_MeVisLab| Integrating CTK CLI modules into MeVisLab]] (Hans Meine, Steve, Jc)<br />
* [[2013_Summer_Project_Week:SimpleITK_GUI| Common Usage GUI for SimpleITK]] (Dave Welch, Brad Lowekamp, Hans Johnson, Steve)<br />
* [[2013_Summer_Project_Week:Extension_dependencies| Extension dependencies]] (Jc, Adam Rankin)<br />
* [[2013_Summer_Project_Week:Parameter_heirarchy| Parameter (time) Hierarchy]] (Adam Rankin, Andras Lasso, Steve Pieper)<br />
* [[2013_Summer_Project_Week:ITK_Shared_IO_Libraries| ITK Shared I/O Libraries]] (Jim,Brad Lowekamp, Jc)<br />
* [[2013_Summer_Project_Week:Python_Embedding| Python Embedding Library]] (Rui, Jim, Jc, Steve)<br />
* [[2013_Summer_Project_Week:MaskedFFTNormalizedCorrelationOverlay | Masked FFT Normalized Correlation Overlay]] (Dirk, Hans, Brad)<br />
<!-- If it applies, update the project count reported below and at the top of the page --><br />
12 projects<br />
<br />
== '''Background''' ==<br />
<br />
We are pleased to announce the 17th PROJECT WEEK of hands-on research and development activity for applications in Neuroscience, Image-Guided Therapy and several additional areas of biomedical research that enable personalized medicine. Participants will engage in open source programming using the [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, medical imaging sequence development, tracking experiments, and clinical application. The main goal of this event is to move forward the translational research deliverables of the sponsoring centers and their collaborators. Active and potential collaborators are encouraged and welcome to attend this event. This event will be set up to maximize informal interaction between participants. If you would like to learn more about this event, please [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week click here to join our mailing list].<br />
<br />
<br />
Active preparation begins on Thursday, April 25th at 3pm ET, with a kick-off teleconference. Invitations to this call will be sent to members of the sponsoring communities, their collaborators, past attendees of the event, as well as any parties who have expressed an interest in working with these centers. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient coverage for all. Subsequent teleconferences will allow for more focused discussions on individual projects and allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams will be asked to fill in a template page on this wiki that describes the objectives and plan of their projects. <br />
<br />
The event itself will start off with a short presentation by each project team, driven using their previously created description, and will help all participants get acquainted with others who are doing similar work. In the rest of the week, about half the time will be spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half will be spent in project teams, doing hands-on project work. The hands-on activities will be done in 40-50 small teams of size 2-4, each with a mix of multi-disciplinary expertise. To facilitate this work, a large room at MIT will be setup with several tables, with internet and power access, and each computer software development based team will gather on a table with their individual laptops, connect to the internet to download their software and data, and be able to work on their projects. Teams working on projects that require the use of medical devices will proceed to Brigham and Women's Hospital and carry out their experiments there. On the last day of the event, a closing presentation session will be held in which each project team will present a summary of what they accomplished during the week.<br />
<br />
This event is part of the translational research efforts of [http://www.na-mic.org NA-MIC], [http://www.ncigt.org NCIGT], [http://nac.spl.harvard.edu/ NAC], [http://catalyst.harvard.edu/home.html Harvard Catalyst], [http://www.cimit.org CIMIT], and OCAIRO. It is an expansion of the NA-MIC Summer Project Week that has been held annually since 2005. It will be held every summer at MIT and Brigham and Womens Hospital in Boston, typically during the last full week of June, and in Salt Lake City in the winter, typically during the second week of January. <br />
<br />
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].<br />
<br />
<br />
== '''Logistics''' ==<br />
<br />
*'''Dates:''' June 17-21, 2013.<br />
*'''Location:''' [[MIT_Project_Week_Rooms| Stata Center / RLE MIT]]. <br />
*'''REGISTRATION:''' http://www.regonline.com/namic2013summerprojweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.<br />
*'''Registration Fee:''' $300.<br />
*'''Hotel:''' Similar to previous years, no rooms have been blocked in a particular hotel.<br />
*'''Room sharing''': If interested, add your name to the list before May 27th. See [[2013_Summer_Project_Week/RoomSharing|here]]<br />
<br />
== '''Preparation''' ==<br />
<br />
# Please make sure that you are on the http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week mailing list<br />
# The NA-MIC engineering team will be discussing projects in a their [http://wiki.na-mic.org/Wiki/index.php/Engineering:TCON_2013 weekly teleconferences]. Participants from the above mailing list will be invited to join to discuss their projects, so please make sure you are on it!<br />
# By 3pm ET on Thursday May 8, all participants to add a one line title of their project to #Projects<br />
# By 3pm ET on Thursday June 6, all project leads to complete [[Project_Week/Template|Complete a templated wiki page for your project]]. Please do not edit the template page itself, but create a new page for your project and cut-and-paste the text from this template page. If you have questions, please send an email to tkapur at bwh.harvard.edu.<br />
# By 3pm on June 13: Create a directory for each project on the [[Engineering:SandBox|NAMIC Sandbox]] (Matt)<br />
## Commit on each sandbox directory the code examples/snippets that represent our first guesses of appropriate methods. (Luis and Steve will help with this, as needed)<br />
## Gather test images in any of the Data sharing resources we have (e.g. XNAT/MIDAS). These ones don't have to be many. At least three different cases, so we can get an idea of the modality-specific characteristics of these images. Put the IDs of these data sets on the wiki page. (the participants must do this.)<br />
## Where possible, setup nightly tests on a separate Dashboard, where we will run the methods that we are experimenting with. The test should post result images and computation time. (Matt)<br />
# Please note that by the time we get to the project event, we should be trying to close off a project milestone rather than starting to work on one...<br />
# People doing Slicer related projects should come to project week with slicer built on your laptop.<br />
## See the [http://www.slicer.org/slicerWiki/index.php/Documentation/4.0/Developers Developer Section of slicer.org] for information.<br />
## Projects to develop extension modules should be built against the latest Slicer4 trunk.<br />
<br />
== '''Registrants''' ==<br />
<br />
Do not add your name to this list - it is maintained by the organizers based on your paid registration. ([http://www.regonline.com/Register/Checkin.aspx?EventID=1233699 Please click here to register.])<br />
<br />
#Parth Amin, WIT, aminp@wit.edu<br />
#Charles Anderson, BWH, canderson26@partners.org<br />
#Peter Anderson, retired, traneus@verizon.net<br />
#Nicole Aucoin, BWH, nicole@bwh.harvard.edu<br />
#Juan Carlos Avila Vilchis, Univ del Estado de Mexico, jc.avila.vilchis@hotmail.com<br />
#Kayhan Batmanghelich, MIT, kayhan@csail.mit.edu<br />
#Salma Bengali, Univ UT, salma.bengali@carma.utah.edu<br />
#Anthony Blumfield, Radnostics, Anthony.Blumfield@Radnostics.com<br />
#Vinicius Boen, Univ Michigan, vboen@umich.edu<br />
#Taylor Braun-Jones, GE Healthcare, taylor.braun-jones@ge.com<br />
#Matthew Brennan, MIT, brennanm@mit.edu<br />
#Francois Budin, NIRAL-UNC, fbudin@unc.edu<br />
#Ivan Buzurovic, BWH/HMS, ibuzurovic@lroc.harvard.edu<br />
#Josh Cates, Univ UT, cates@sci.utah.edu<br />
#Micah Chambers, UCLA, micahcc@ucla.edu<br />
#Laurent Chauvin, BWH - SPL, lchauvin@bwh.harvard.edu<br />
#Marine Clogenson, Ecole Polytechnique Federale de Lausanne (Switzerland), marine.clogenson@epfl.ch<br />
#Adrian Dalca, MIT, adalca@MIT.EDU<br />
#Matthew D'Artista, BWH - SPL, mdartista7@gmail.com<br />
#Manasi Datar, Univ UT-SCI Institute, datar@sci.utah.edu<br />
#Sneha Durgapal, BWH, durgapalsneha@gmail.com<br />
#Luping Fang, Zhejiang Univ of Technology (China), flp@zjut.edu.cn<br />
#Andriy Fedorov, BWH, fedorov@bwh.harvard.edu<br />
#Jean-Christophe Fillion-Robin, Kitware, jchris.fillionr@kitware.com<br />
#Gregory Fischer, WPI, gfischer@wpi.edu<br />
#Barton Fiske, zSpace Inc, bfiske@zspace.com<br />
#Matthew Flynn, WIT, flynnm3@wit.edu<br />
#Karl Fritscher, MGH, kfritscher@gmail.com<br />
#Yi Gao, Univ AL Birmingham, gaoyi.cn@gmail.com<br />
#Alexandra Golby, BWH, agolby@partners.org <br />
#Maria Gonzalez-Puente, WIT, gonzalezpuentem@wit.edu<br />
#Dan Groszmann, GE Healthcare, daniel.groszmann@ge.com<br />
#Daniel Haehn, Boston Childrens Hospital, daniel.haehn@childrens.harvard.edu<br />
#Michael Halle, BWH-SPL, mhalle@bwh.harvard.edu<br />
#Rola Harmouche, BWH, rharmo@bwh.harvard.edu<br />
#Amanda Hartung, Rochester Inst of Tech, amh1646@rit.edu<br />
#Nobuhiko Hata, BWH, hata@bwh.harvard.edu<br />
#Nicholas Herlambang, AZE Technology Inc, nicholas.herlambang@azetech.com<br />
#Matthew Holden, Queen's Univ (Canada), mholden8@cs.queensu.ca<br />
#Andrei Irimia, UCLA, andrei.irimia@loni.ucla.edu<br />
#Jayender Jagadeesan, BWH-SPL, jayender@bwh.harvard.edu<br />
#Sylvain Jaume, WIT, jaumes@wit.edu<br />
#Daniel Jimenez, daniel.jimenez@gmail.com<br />
#Hans Johnson, Univ Iowa, hans-johnson@uiowa.edu<br />
#Tina Kapur, BWH/HMS, tkapur@bwh.harvard.edu<br />
#Alex Kikinis, BWH, alexkikinis@gmail.com<br />
#Ron Kikinis, HMS, kikinis@bwh.harvard.edu<br />
#Nils Klarlund, IEEE, klarlund@ieee.org<br />
#Daniel Kostro, BWH, dkostro@bwh.harvard.edu<br />
#Andras Lasso, Queen's Univ (Canada), lasso@cs.queensu.ca<br />
#Rui Li, GE Global Research, li.rui@ge.com<br />
#Xu Li, BWH, lixu0103@gmail.com<br />
#Lichen Liang, MGH, lichenl@nmr.mgh.harvard.edu<br />
#Sidong Liu, Univ Sydney (Australia), sliu7418@uni.sydney.edu.au<br />
#William Lorensen, Bill's Basement, bill.lorensen@gmail.com <br />
#Bradley Lowekamp, Medical Science & Computing Inc, bradley.lowekamp@nih.gov<br />
#Athena Lyons, Univ Western Australia, 20359511@student.uwa.edu.au<br />
#Nikos Makris, MGH, nikos@nmr.mgh.harvard.edu<br />
#Katie Mastrogiacomo, BWH - SPL, kmast@bwh.harvard.edu<br />
#Alireza Mehrtash, BWH - SPL, mehrtash@bwh.harvard.edu<br />
#Hans Meine, Fraunhofer MEVIS (Germany), hans.meine@mevis.fraunhofer.de<br />
#Jim Miller, GE Global Research, millerjv@ge.com<br />
#Luis Murta, Univ Sao Paulo (Brazil), lomurta@gmail.com<br />
#Arie Nakhmani, Univ AL Birmingham, anry@uab.edu<br />
#Isaiah Norton, BWH, inorton@bwh.harvard.edu<br />
#Lauren O'Donnell, BWH, odonnell@bwh.harvard.edu<br />
#Dirk Padfield, GE Global Research, padfield@research.ge.com<br />
#Jian Pan, Zhejiang Univ of Technology (China), pj@zjut.edu.cn<br />
#George Papadimitriou, MGH, georgep@nmr.mgh.harvard.edu<br />
#Nirav Patel, WPI, napatel@wpi.edu<br />
#Tobias Penzkofer, BWH - SPL, pt@bwh.harvard.edu<br />
#Rudolph Pienaar, Boston Childrens Hospital, Rudolph.Pienaar@childrens.harvard.edu<br />
#Steve Pieper, Isomics Inc, pieper@isomics.com<br />
#Csaba Pinter, Queen's Univ (Canada), pinter@cs.queensu.ca<br />
#William Plishker, IGI Technologies, will@igitechnologies.com<br />
#Sonia Pujol, HMS, spujol@bwh.harvard.edu<br />
#Adam Rankin, Queen's Univ (Canada), rankin@cs.queensu.ca<br />
#Nathaniel Reynolds, MGH, reynolds@nmr.mgh.harvard.edu<br />
#Raul San Jose, BWH, rjosest@bwh.harvard.edu<br />
#Peter Savadjiev, BWH, petersv@bwh.harvard.edu<br />
#Tobias Schroeder, GE Healthcare, tobias.schroeder@ge.com<br />
#Anuja Sharma, Univ UT-SCI Institute, anuja@cs.utah.edu<br />
#Greg Sharp, MGH, gcsharp@partners.org<br />
#Nadya Shusharina, MGH, nshusharina@partners.org<br />
#Sebastian Tauscher, Leibniz Univ Hannover (Germany), sebastian.tauscher@imes.uni-hannover.de<br />
#Clare Tempany, BWH, ctempanyafdhal@partners.org<br />
#Cyrill von Tiesenhausen, KUKA Laboratories (Germany), cyrill.tiesenhausen@kuka.com<br />
#Gaurie Tilak, BWH, gaurie_tilak@hms.harvard.edu<br />
#Matthew Toews, BWH/HMS, mt@bwh.harvard.edu<br />
#Junichi Tokuda, BWH, tokuda@bwh.harvard.edu<br />
#Tamas Ungi, Queen's Univ (Canada), ungi@cs.queensu.ca<br />
#Adriana Vilchis González, Univ del Estado de Mexico, hvigady@hotmail.com<br />
#Kirby Vosburgh, BWH, kirby@bwh.harvard.edu<br />
#Christian Wachinger, MIT, wachinge@mit.edu<br />
#Bo Wang, Univ UT-SCI Institute, bowang@sci.utah.edu<br />
#Demian Wassermann, BWH, demian@bwh.harvard.edu<br />
#David Welch, Univ Iowa, david-welch@uiowa.edu<br />
#William Wells, BWH/HMS, sw@bwh.harvard.edu<br />
#Phillip White, BWH/HMS, white@bwh.harvard.edu<br />
#Alex Yarmarkovich, Isomics Inc, alexy@bwh.harvard.edu<br />
#Kitaro Yoshimitsu, BWH, kitarof1@bwh.harvard.edu<br />
#Yang Yu, Rutgers Univ, yyu@cs.rutgers.edu<br />
#Paolo Zaffino, Univ Magna Graecia of Catanzaro (Italy), p.zaffino@unicz.it<br />
#Lilla Zollei, MGH, lzollei@nmr.mgh.harvard.edu</div>Dchamberlain