https://www.na-mic.org/w/api.php?action=feedcontributions&user=Shery&feedformat=atomNAMIC Wiki - User contributions [en]2024-03-29T04:42:50ZUser contributionsMediaWiki 1.33.0https://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96677Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T09:08:47Z<p>Shery: correcting illustration</p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab:<br />
<br />
[[image:Picture 2016-12-19 13 55 31.png|500px]] <br />
[[image:Picture 2017-06-26 11 04 59.png|500px]] <br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96675Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T09:07:01Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab:<br />
<br />
[[image:Picture 2016-12-19 13 55 31.png|500px]] [[image:Picture 2017-06-26 11 04 59.png|500pxl]]<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=File:Picture_2017-06-26_11_04_59.png&diff=96674File:Picture 2017-06-26 11 04 59.png2017-06-26T09:06:16Z<p>Shery: </p>
<hr />
<div>lw control</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96673Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T09:04:03Z<p>Shery: foto</p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab:<br />
<br />
[[image:Picture 2016-12-19 13 55 31.png|500px]]<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96671Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T09:03:17Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab:<br />
<br />
[[image:Picture 2016-12-19 13 55 31.png|50px MeVisLab-Kuka.png |500px]]<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96668Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T09:02:08Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab:<br />
<br />
[[image:Picture 2016-12-19 13 55 31.png|50px MeVisLab-Kuka |500px]]<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96664Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T08:58:12Z<p>Shery: /* Illustrations */</p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab:<br />
<br />
[[File:Picture 2016-12-19 13 55 31.png|thumb|MeVisLab-Kuka]]<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96663Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T08:57:24Z<p>Shery: adding MeVisLAb+Kuka</p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
LWR Robot simulation in MeVisLab<br />
[[File:Picture 2016-12-19 13 55 31.png|thumb|MeVisLab-Kuka]]<br />
<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=File:Picture_2016-12-19_13_55_31.png&diff=96660File:Picture 2016-12-19 13 55 31.png2017-06-26T08:55:30Z<p>Shery: </p>
<hr />
<div>LWR Simulation in MeVislab</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25/Segmentation_for_improving_image_registration_of_preoperative_MRI_with_intraoperative_ultrasound_images_for_neuro-navigation&diff=96656Project Week 25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation2017-06-26T08:52:48Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
Back to [[Project_Week_25#Projects|Projects List]]<br />
<br />
==Key Investigators==<br />
*[http://www.mic.uni-bremen.de/jennifer-nitsch/ Jennifer Nitsch] (University of Bremen, Germany)<br />
*[http://www.mic.uni-bremen.de/cmt-management-team/scheherazade-kras/ Scheherazade Kraß] (University of Bremen, Germany)<br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Segmented multiple anatomical structures/landmarks in both MRI and Ultrasound (US) images, using machine learning algorithms (applicability of Deep Learning algorithms is currently tested, DL for US-images, data augmentation...).<br />
<br />
*The next step would be to analyze the improvement of registration quality with different segmentations/generated landmarks in order to adapt the segmentation algorithms.<br />
<br />
*Using advanced segmentation and registration features for iterative robot control. The respective status of the Kuka LWR iiwa (position, configuration) is simulated and visualized as 3-D model in MeVisLab. Medical data sets in-cluding target pose (position and path towards it) can be send and received via the OpenIGTLink network protocol as well.<br />
<br />
|<br />
<!-- Approach and Plan bullet points --><br />
*Starting from multi-modal image segmentation in preopertive MRI and intraoperative Ultrasound images,<br />
it would be to discuss in which "form" one or multiple segmented structures should influence the registration result.<br />
|<br />
<!-- Progress and Next steps (fill out at the end of project week), Please start each sentence in a new line. --><br />
|}<br />
<br />
==Illustrations==<br />
[[image:RegistrationInNeuroNavigationSystem.png|500px]]<br />
<br />
Using segmented structures as guiding frame for multi-modal image registration:<br />
<br />
[[image:MultimodalImageSegmentation3.png|500px]]<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --><br />
In glioma surgery neuronavigation systems assist in determining the tumor's location and estimating its extent. However, the intraoperative situation diverges seriously from the preoperative situation in the MRI scan<br />
displayed on the navigation system. The movement of brain tissue during surgery, i.e., caused by brainshift<br />
and tissue removal, must be considered mentally by the surgeon. A task that gets more challenging in later<br />
phases of the tumor resection. <br />
<br />
Besides, it is an exhaustive issue and the shift of cerebral structures must be<br />
expected being non-uniform and that it implies a deformation of the image data. This makes it especially hard<br />
to mentally predict and model.<br />
<br />
Thus, intraoperative imaging modalities are used to visualize the current intraoperative situation. IUS,<br />
for instance, is easy to use intraoperatively, offers real-time information, is widely available at low cost and<br />
causes no radiation. These are important advantages when iUS is compared with iCT or iMRI. However, in<br />
image-guided surgery precise image registration of iUS and preMRI and the thereon-based image fusion is still<br />
an unsolved problem. The different representations of cerebral structures in both modalities as well as<br />
artifacts within the iUS, hinder direct fusion of both modalities.</div>Sheryhttps://www.na-mic.org/w/index.php?title=Project_Week_25&diff=95640Project Week 252017-05-24T12:51:07Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
Back to [[Events]]<br />
<br />
A summary of all past [[Project_Events#Past_Project_Weeks|Project Events]].<br />
<br />
[[image:PW-Summer2017.png|300px]] [[image:IEL_logo.png|225px]]<br />
<br><br />
<br />
=Welcome to the web page for the 25th Project Week!=<br />
<br />
It is a pleasure to announce that the 25th Project week will be held in [https://goo.gl/maps/b9CpkFxNyWN2 Catanzaro Lido] (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with [http://www.imagenglab.com ImagEngLab]. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list].<br />
<br />
===Local Organizing Committee===<br />
*[http://www.imagenglab.com/newsite/mf_spadea/ Maria Francesca Spadea, PhD]<br />
*[http://www.imagenglab.com/newsite/paolo_zaffino/ Paolo Zaffino, PhD].<br />
<br />
==Hangouts for preparation==<br />
#(Tina Kapur) Hangout #1: April 5th, 2017 - 9.00 AM Boston time: [https://plus.google.com/events/cjh9ag37hm1e7peplatphl7kh2g?authkey=COWc5cKc77jymgE event page] ([[PW25 Hangouts Notes|Notes]])<br />
#(Steve Pieper) Hangout #2: Wednesday April 12, 2017, 9am EDT (GMT-4): Web browser based computing: Dockerized Slicer with remote computing and GPU computing; Cornerstone/LesionTracker OHIF; XTK->AMI (threejs); ePad; vtk.js; QWebEngine; [https://plus.google.com/hangouts/_/kitware.com/pw-25?hceid=a2l0d2FyZS5jb21fc2IwN2kxNzFvbGFjOWFhdmg0NmlyNDk1YzRAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ.fffs75fitbu0mvpl3vvmrcqf3s&authuser=0 hangout page]<br />
#(Andras Lasso) Hangout #3: Wednesday April 19, 2017, 9am EDT (GMT-4) Connecting devices such as surgical navigation, ultrasound, 3D Slicer, PLUS, OpenIGTLink, Augmented reality; [https://hangouts.google.com/hangouts/_/kitware.com/pw-25?authuser=0 hangout page]<br />
#(Tina Kapur) Hangout #4: Wednesday April 26, 2017, 9am EDT (GMT-4) Deep Learning for Detection of Cancer and Instruments; [https://hangouts.google.com/hangouts/_/kitware.com/pw-25?authuser=0 hangout page];<br />
#(Simon Drouin) Hangout #5: Wednesday May 3, 2017, 9am EDT (GMT-4)Volume Rendering, Augmented Reality, and Virtual Reality. [https://docs.google.com/document/d/1UwdSzjnDm1yEeQ44OEhXWbH6V83Uo1Cd4KngxoyrRdI/edit Notes];[https://plus.google.com/hangouts/_/kitware.com/pw-25?hceid=a2l0d2FyZS5jb21fc2IwN2kxNzFvbGFjOWFhdmg0NmlyNDk1YzRAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ.fffs75fitbu0mvpl3vvmrcqf3s&authuser=0 hangout page]<br />
#(Tina Kapur) Hangout #6: Wednesday May 10, 2017, 9am EDT (GMT-4) For new participants: What is project week and how to get the most out of participating in it? [https://hangouts.google.com/hangouts/_/kitware.com/pw-25?authuser=0 hangout page]<br />
#(Andrey Fedorov) Hangout #7: Wednesday May 17, 2017, 9am EDT (GMT-4) DICOM for Quantitative Imaging and integration with processing applications. [https://hangouts.google.com/hangouts/_/kitware.com/pw-25?authuser=0 hangout page] ([http://bit.ly/2017NSPW-DICOM notes])<br />
#(Tina Kapur) Hangout #8: Wednesday May 24, 2017, 9am EDT (GMT-4) Review of Projects and teams that have been provided on the wiki page by participants, internationalization strategy for Slicer. [https://hangouts.google.com/hangouts/_/kitware.com/pw-25?authuser=0 hangout page]<br />
#(Francesca Spadea) Hangout #9: Wednesday May 31, 2017, 9am EDT (GMT-4) Review of local logistics -- all registered attendees should join<br />
#(TBD) Hangout #10: Wednesday June 7, 2017, 9am EDT (GMT-4) TBD<br />
#(TBD) Hangout #11: Wednesday June 14, 2017, 9am EDT (GMT-4) TBD<br />
#(Francesca Spadea) Hangout #12: Wednesday June 21, 2017, 9am EDT (GMT-4) Review of local logistics -- all registered attendees with questions should join<br />
<br />
==Logistics==<br />
<br />
*'''Dates:''' June 26-30, 2017. Consider staying for one more day (leaving Sunday morning), as a day off in a gorgeous sea place is planned on July 1st. More details will be posted soon.<br />
*'''Location:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]<br />
**[mailto:prenotazioni@hotelperladelporto.it Booking]. Subject line: "Slicer Summer Project Week 2017". <br />
***Special rates are:<br />
****Single room, full bed, 79 € per night (1 person)<br />
****Single room, queen bed 89 € per night (1 person)<br />
****Double room, queen bed 99 € per night (2 people)<br />
****Triple room, 110 € (3 people)<br />
*'''REGISTRATION:''' To register please visit this [http://www.imagenglab.com/newsite/project-week page]<br />
*'''Registration Fee:''' 320€ and it includes lunches, coffee breaks and airport connections<br />
*'''Hotel:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. The closest airport is [http://www.lameziaairport.it/english/ Lamezia Terme Airport (IATA: SUF)].<br />
*'''Transportation from Airport to Hotel''' Your registration fee includes ground transportation [https://www.google.com/maps/dir/Lamezia+Terme+International+Airport,+Via+Aeroporto,+88046+Lamezia+Terme+CZ,+Italy/BEST+WESTERN+PLUS+Hotel+Perla+Del+Porto,+Via+Martiri+di+Cefalonia,+64,+88100+Catanzaro,+Italy/@38.868758,16.1564814,10z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x133fe15a3cbed47f:0x544ab120c3de78a6!2m2!1d16.2434017!2d38.9065845!1m5!1m1!1s0x134003d668252a13:0x2989caf676f45a72!2m2!1d16.6312407!2d38.827712!3e0 to/from the hotel and airport].<br />
** Please fill out this form to request transportation https://goo.gl/forms/7vmhxZSHy8Z1A62z2<br />
*'''Local points of interest (pubs, restaurants, bar):''' [https://www.google.com/maps/d/viewer?mid=1FU63ik9Do3zzP6K2kvLVTtM2at8&ll=38.86221979925013%2C16.44292274999998&z=12 map (constantly updated)]<br />
<br />
==Calendar==<br />
<br />
'''''<font color="maroon">The events are listed in the calendar below. Note that due to a current known limitation of our infrastructure, you will need to manually navigate to the week of June 26, 2017 to see the relevant events.</font>'''''<br><br />
<br />
<br />
{{#widget:Google Calendar<br />
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com<br />
|timezone=America/New_York&dates=20170108%2F20170114<br />
|title=NA-MIC Project Week<br />
|view=WEEK<br />
|dates=20170626/20170701<br />
}}<br />
<br />
iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics<br />
<br />
<br />
=Projects=<br />
<br />
Please put a brief preliminary title for your project here with some names in parenthesis for potential team members<br />
<br />
#Needle segmentation Project 1 (Guillaume Pernelle, Tina Kapur, Paolo Zaffino, Salvatore Scaramuzzino, Francesca Spadea)<br />
#Needle segmentation Project 2 (Paolo Zaffino, Salvatore Scaramuzzino, Francesca Spadea, Guillaume Pernelle, Tina Kapur)<br />
#DICOM Segmentation support for Cornerstone / OHIF Viewer (Erik Ziegler)<br />
#Conversion of DICOM single frame MR to Enhanced Multiframe (Michael Onken, Steve Pieper)<br />
#Human-Computer Interaction under sterile conditions (Christian Hansen, Julian Hettig, Benjamin Hatscher, David Black)<br />
#Development and evaluation of new AR visualization technniques to support radiological interventions (Christian Hansen, Florian Heinrich, Andrè Mewes)<br />
#Interactive manipulation of plots and graphs: i) panning; ii) click and drag; iii) data selection (Davide Punzo, Steve Pieper)<br />
#Next generation of volume rendering in VTK (Simon Drouin, Steve Pieper, Ole Vegard Solberg)<br />
#Tracked Ultrasound Standardization IV: Controlling US acquisition (Simon Drouin, Ole Vegard Solberg, Andras Lasso, Longquan Chen, Adam Rankin?)<br />
#Steerable catheters path planner extension for brain surgery applications (Alberto Favaro, Marlene Pinzi)<br />
#Improving depth perception in interventional Augmented Reality visualization/(+sonification?) (Simon Drouin, Christian Hansen, David Black)<br />
#DICOM for Quantitative Imaging and integration with processing applications (Jasmin Metzger, Marco Nolden, Steve Pieper)<br />
#Tissue deformation estimation based on dense points cloud reconstruction using stereo images (Sara Moccia)<br />
#Segmentation for improving image registration of preoperative MRI/ultrasound images for neuro-navigation(Jennifer Nitsch, Scheherazade Kraß)<br />
<br />
=Registrants=<br />
<br />
Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this [http://www.imagenglab.com/newsite/project-week/ registration site].<br />
<br />
# Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA<br />
# Pieper, Steve :: Isomics, Inc., USA<br />
# Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA<br />
# Spadea, Maria Francesca :: Magna Graecia University, Italy<br />
# Zaffino, Paolo :: Magna Graecia University, Italy<br />
# Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy<br />
# Pileggi, Giampaolo :: Magna Graecia University, Italy/DKFZ, Germany<br />
# Rackerseder, Julia :: Technische Universität München, Germany<br />
# Pinter, Csaba :: Queen's University, Canada<br />
# Kraß, Scheherazade :: University of Bremen, Germany<br />
# Gerig, Guido :: NYU Tandon School of Engineering, USA<br />
# Punzo, Davide :: Kapteyn Astronomical Institute, Netherlands<br />
# Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada<br />
# Lasso, Andras :: School of Computing, Queen's University, Canada<br />
# Favaro, Alberto :: Politecnico di Milano, Italy<br />
# Leger, Etienne :: Concordia University, Canada<br />
# Ziegler, Erik :: Ziegler Consult SAS<br />
# Onken, Michael :: Open Connections GmbH, Germany<br />
# Pinzi, Marlene :: Imperial College, UK<br />
# Nitsch, Jennifer :: University Of Bremen, Germany<br />
# Moccia, Sara :: Politecnico di Milano, Italy<br />
# Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany<br />
# Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany<br />
# Hansen, Christian :: Universität Magdeburg, Germany<br />
# Vegard Solberg, Ole :: Norway<br />
# Heinrich, Florian :: Universität Magdeburg, Germany<br />
# Mewes, André :: Universität Magdeburg, Germany<br />
# Hatscher, Benjamin :: Universität Magdeburg, Germany<br />
# Hettig, Julian :: Universität Magdeburg, Germany<br />
# Meyer, Anneke :: Universität Magdeburg, Germany<br />
# Gulamhussene, Gino :: Universität Magdeburg, Germany</div>Sheryhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/OpenIGTLink_for_the_Communications_of_Robotics_Devices:_Adding_Kuka_LWR_connection_to_MeVisLab&diff=940382017 Winter Project Week/OpenIGTLink for the Communications of Robotics Devices: Adding Kuka LWR connection to MeVisLab2016-12-16T13:41:21Z<p>Shery: adding image</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
Image:Picture_2016-12-16_14_17_19.png<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
* Scheherazade Kraß<br />
*<br />
*<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Make OpenTIGT Link work with all needed supported data types working in MeVislab<br />
*Support KUKA LWR<br />
|<br />
<!-- Approach and Plan bullet points --><br />
# Adding and completing the OpenIGTLink integration in MeVisLab: <br />
## Checking the different data types, in send and receive modes<br />
# Adding the support for connection of MeVisLab with KUKA LWR robot system.<br />
## simulating the Robot Arm in MeVisLab <br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week) --><br />
*<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --></div>Sheryhttps://www.na-mic.org/w/index.php?title=File:Picture_2016-12-16_14_17_19.png&diff=94037File:Picture 2016-12-16 14 17 19.png2016-12-16T13:32:58Z<p>Shery: </p>
<hr />
<div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week/OpenIGTLink_for_the_Communications_of_Robotics_Devices:_Adding_Kuka_LWR_connection_to_MeVisLab&diff=940362017 Winter Project Week/OpenIGTLink for the Communications of Robotics Devices: Adding Kuka LWR connection to MeVisLab2016-12-16T13:25:17Z<p>Shery: Creating the page for the first time</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]<br />
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --><br />
</gallery><br />
<br />
==Key Investigators==<br />
<!-- Add a bulleted list of investigators and their institutions here --><br />
<br />
==Project Description==<br />
{| class="wikitable"<br />
! style="text-align: left; width:27%" | Objective<br />
! style="text-align: left; width:27%" | Approach and Plan<br />
! style="text-align: left; width:27%" | Progress and Next Steps<br />
|- style="vertical-align:top;"<br />
|<br />
<!-- Objective bullet points --><br />
*Make OpenTIGT Link work with all needed supported data types working in MeVislab<br />
*Support KUKA LWR<br />
|<br />
<!-- Approach and Plan bullet points --><br />
# Adding and completing the OpenIGTLink integration in MeVisLab: <br />
## Checking the different data types, in send and receive modes<br />
# Adding the support for connection of MeVisLab with KUKA LWR robot system.<br />
## simulating the Robot Arm in MeVisLab <br />
|<br />
<!-- Progress and Next steps bullet points (fill out at the end of project week) --><br />
*<br />
|}<br />
<br />
==Background and References==<br />
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --></div>Sheryhttps://www.na-mic.org/w/index.php?title=2017_Winter_Project_Week&diff=940352017 Winter Project Week2016-12-16T13:18:05Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
[[image:PW-Winter2017.png|300px]]<br />
<br />
=Welcome to the web page for the 24th Project Week!=<br />
<br />
The 24th NA-MIC Project Week open source hackathon is being held during the week of January 9-13, 2017 at MIT. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
==Logistics==<br />
<br />
*'''Dates:''' January 9-13, 2017.<br />
*'''Location:''' [https://www.google.com/maps/place/MIT:+Computer+Science+and+Artificial+Intelligence+Laboratory/@42.361864,-71.090563,16z/data=!4m2!3m1!1s0x0:0x303ada1e9664dfed?hl=en MIT CSAIL], Cambridge, MA. (Rooms: [[MIT_Project_Week_Rooms#Kiva|Kiva]], R&D)<br />
*'''REGISTRATION:''' Register [https://www.regonline.com/2017projectweek here]. Registration Fee: $330.<br />
*'''Hotel:''' Similar to previous years, no rooms have been blocked in a particular hotel.<br />
<br />
<br />
== Introduction ==<br />
The National Alliance for Medical Image Computing (NAMIC), was founded in 2005 and chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], enhancements to the underlying building blocks [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an open source hackathon event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual open source hackathon which draws 60-120 researchers. As of August 2014, it is a [http://www.miccai.org/organization MICCAI] endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], and [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO]. <br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past_Project_Weeks|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
Please make sure that you are on the NA-MIC Project Week [http://public.kitware.com/mailman/listinfo/na-mic-project-week mailing list]<br />
<br />
==Conference Calls for Preparation==<br />
<br />
Conference call phone number and notes are available [[TCONS:2007_Winter_Project_Week|here]].<br />
<br />
==Agenda==<br />
<br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f" <br />
!style="width:10%" |Time<br />
!style="width:18%" |Monday, January 9<br />
!style="width:18%" |Tuesday, January 10<br />
!style="width:18%" |Wednesday, January 11<br />
!style="width:18%" |Thursday, January 12<br />
!style="width:18%" |Friday, January 13<br />
|-<br />
|<br />
|bgcolor="#dbdbdb"|'''Project Presentations''' <br />
|bgcolor="#6494ec"| '''Work on Projects'''<br />
|bgcolor="#6494ec"| '''Work on Projects'''<br />
|bgcolor="#6494ec"| '''Work on Projects'''<br />
|bgcolor="#faedb6"| '''Reporting Day'''<br />
|-<br />
|bgcolor="#ffffdd"|'''8:30am'''<br />
|rowspan="2"|<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast<br />
|bgcolor="#ffffaa"|Breakfast <br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-10:30am'''<br />
|bgcolor="#88aaae"|Prostate Clinical Discussion with Clare Tempany (to be confirmed)<br />
|bgcolor="#88aaae"|9:00am-10:00am: Shape Analysis Breakout<br>---- ---- ---- ---- ---- ----<br>10:00am-12:00pm: Luis Ibanez TensorFlow Workshop (to be confirmed)<br />
|bgcolor="#88aaae"|Prostate Cancer: Quantitative Imaging Network Discussion with Fiona Fennessy<br />
|bgcolor="#88aaae"|Clinical Topics<br />
|-<br />
|bgcolor="#ffffdd"|'''10:30am-12pm:'''<br />
|'''Talk (Sebastian Ourselin, PhD, UCL)'''<br />
|<br />
|<br />
|<br />
|Project Reporting<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch <br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch boxes; Adjourn by 1:30pm<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00-5:30pm'''<br />
|'''1:00pm-2:30pm:''' Project Presentations<br />
|<br />
|<br />
|<br />
|'''1:30-2:30pm:''' [[AMIGO_TourPW2017Winter|AMIGO Tour]]<br />
|-<br />
|bgcolor="#ffffdd"|'''5:30pm'''<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day<br />
|bgcolor="#f0e68b"|Adjourn for the day <br> [[2017_Winter_Project_Week/Dinner|Dinner on Thursday Night]] (Optional)<br />
|<br />
|}<br />
<br />
==Calendar==<br />
<br />
'''''<font color="maroon">The events are listed in the calendar below. Note that due to a current known limitation of our infrastructure, you will need to manually navigate to the week of January 8, 2017 to see the relevant events.</font>'''''<br><br />
<br />
<br />
{{#widget:Google Calendar<br />
|id=kitware.com_sb07i171olac9aavh46ir495c4@group.calendar.google.com<br />
|timezone=America/New_York&dates=20170108%2F20170114<br />
|title=NAMIC Winter Project Week<br />
|view=WEEK<br />
|dates=20170108/20170114<br />
}}<br />
<br />
iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics<br />
<br />
='''Projects'''=<br />
<br />
*Use this [[2017_Project_Week_Template | Updated Template for project pages]]<br />
<br />
== Learning and GPUs ==<br />
<br />
== Web Technologies ==<br />
* [[2017_Winter_Project_Week/OAuth2SlicerPathology | OAuth2.0 authentication in SlicerPathology]] (Erich Bremer)<br />
<br />
== Visualization ==<br />
* [[2017 Winter Project Week/Slicer_HoloLens | Slicer & HoloLens]] (Adam Rankin)<br />
<br />
== IGT ==<br />
* [[2017 Winter Project Week/Tracked Ultrasound Standardization | Tracked Ultrasound Standardization III: The Refining]] (Andras Lasso, Simon Drouin, Junichi Tokuda, Longquan Chen, Adam Rankin, Janne Beate Bakeng)<br />
* [[2017 Winter Project Week/WhiteMatterAnalysis | WhiteMatterAnalysis New Module and Documentation]] (Fan Zhang, Isaiah Norton, Ye Wu, Lauren J. O'Donnell)<br />
* [[2017 Winter Project Week/ROS Surface Scan | ROS Surface Scan]] (Tobias Frank, Junichi Tokuda, Longquan Chen)<br />
<br />
== Robotics in IGT ==<br />
* [[2017 Winter Project Week/OpenIGTLink for the Communications of Robotics Devices: Adding Kuka LWR connection to MeVisLab | OpenIGTLink for the Communications of Robotics Devices: Adding Kuka LWR connection to MeVisLab ]] (Scheherazade Kraß (Shery), Junichi Tokuda, Longquan Chen, )<br />
<br />
== Craniofacial == <br />
<br />
<br />
== Infrastructure ==<br />
* [[2017 Winter Project Week/Slicer Qt5 and Python3 | Slicer Qt5 and Python3]] (Steve Pieper, Jean-Christophe Fillion-Robin, Andras Lasso, Andrey Fedorov)<br />
* [[2017 Winter Project Week/SlicerDMRIDocumentationAndTesting | SlicerDMRI Testing and Documentation]] (Isaiah Norton, Fan Zhang, Shun Gong, Ye Wu, Lauren J. O'Donnell)<br />
* [[2017 Winter Project Week/SubjectHierarchyRefactoring | Subject hierarchy refactoring]] (Csaba Pinter)<br />
<br />
== DICOM ==<br />
<br />
==To be Categorized==<br />
<br />
* [[2017 Winter Project Week/HyperspectralOpht | Slicer for Hyperspectral Ophthalmology Analysis ]] (Sungmin Hong)<br />
<br />
= '''Registrants''' =<br />
<br />
Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this [https://www.regonline.com/2017projectweek registration site].<br />
<br />
# Peter Anderson :: Retired<br />
# Johan Andruejol :: Kitware, Inc.<br />
# Janne Beate Bakeng :: SINTEF<br />
# Andrew Beers :: Massachusetts General Hospital<br />
# Jorge Luis Bernal Rusiel :: Boston Children's Hospital<br />
# Laurent Chauvin :: ETS<br />
# Alexis Girault :: Kitware, Inc.<br />
# Polina Golland :: Massachusetts Institute of Technology<br />
# Shun Gong :: Brigham and Women's Hospital<br />
# Ron Kikinis :: Brigham and Women's Hospital<br />
# Katie Mastrogiacomo :: Brigham and Women's Hospital<br />
# Beatriz Paniagua :: Kitware, Inc.<br />
# Chintan Parmar :: DFCI-Harvard Medical School<br />
# Steve Pieper :: Isomics, Inc.<br />
# Frank Preiswerk :: Brigham and Women's Hospital<br />
# Patmaa Sridharan :: University of Pennsylvania-CBICA<br />
# Roman Zeleznik - DFCI<br />
# Miaomiao Zhang - Massachusetts Institute of Technology</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934892016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-27T10:36:30Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* We designed and discussed about our module in MeVisLab, which is presented in an abstract paper. This was submitted in [http://www.curac.org/index.php CURAC] (The German society for computer and robotic assisted surgery) during the project week<br />
*We compiled the latest available OpenIGTLink Library and worked on different examples and communication methods.<br />
*Integrate and develop the module to achieve the defined goal.<br />
<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934882016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-27T10:35:46Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* We designed and discussed about our module in MeVisLab, which is presented in an abstract paper. This was submitted in [http://www.curac.org/index.php CURAC] (The German society for computer and robotic assisted surgery) during the project week<br />
*We compiled the latest available OpenIGTLink Library and worked on different examples and communication methods.<br />
* Next steps: Integrate and develop the module to achieve the defined goal.<br />
<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934872016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-27T10:34:53Z<p>Shery: removing paper link</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* We designed and discussed about our module in MeVisLab, which is presented in the following paper. This was submitted in [http://www.curac.org/index.php CURAC] (The German society for computer and robotic assisted surgery) during the project week:<br />
**"A generic module interface in MeVisLab using OpenIGTLink for defining real-time communication workflows among robotic devices"<br />
*We compiled the latest available OpenIGTLink Library and worked on different examples and communication methods.<br />
* Next steps: Integrate and develop the module to achieve the defined goal.<br />
<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934522016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-25T09:00:19Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* We designed and discussed about our module in MeVisLab, which is presented in the following paper. This was submitted in [http://www.curac.org/index.php CURAC] (The German society for computer and robotic assisted surgery) during the project week:<br />
**"A generic module interface in MeVisLab using OpenIGTLink for defining real-time communication workflows among robotic devices"<br />
**For details please see [http://wiki.na-mic.org/Wiki/images/0/0c/ScheherazadeKrass_CURAC_2016.pdf the paper].<br />
*We compiled the latest available OpenIGTLink Library and worked on different examples and communication methods.<br />
* Next steps: Integrate and develop the module to achieve the defined goal.<br />
<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934462016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-25T08:54:47Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* We designed and discussed about our module in MeVisLab, which is presented in the following paper. This was submitted in [http://www.curac.org/index.php CURAC] (The German society for computer and robotic assisted surgery) during the project week:<br />
**"A generic module interface in MeVisLab using OpenIGTLink for defining real-time communication workflows among robotic devices"<br />
**For details please see [http://wiki.na-mic.org/Wiki/images/0/0c/ScheherazadeKrass_CURAC_2016.pdf the paper].<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934322016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-25T08:38:39Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* We designed and discussed:<br />
**"A generic module interface in MeVisLab using OpenIGTLink for defining real-time communication workflows among robotic devices"<br />
**For details please see: http://wiki.na-mic.org/Wiki/images/0/0c/ScheherazadeKrass_CURAC_2016.pdf <br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=934252016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-25T08:30:43Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<br />
<h5>PLUS Platform</h5><br />
*Plus is an open-source software toolkit for data acquisition, pre-processing, and calibration for navigated image-guided interventions. OpenIGTLink is integrated inside for communication.<br />
#Website: https://app.assembla.com/spaces/plus/wiki<br />
#OpenIGTLInk is only a communication protocal, the control of the medical devices is achieved by PLUS<br />
#Kuka LBR is supported<br />
<br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
#OpenIGTLinkIO is a slicer independent library to use OpenIGTLink, could be used as good example (https://github.com/IGSIO/OpenIGTLinkIO)<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* A generic module interface in MeVisLab using OpenIGTLink for defining real-time communication workflows among robotic devices<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928482016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T10:01:12Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop, connect/disconnect<br />
**Create Thread for realtime (?)<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928472016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T09:55:20Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
**Create Client /Server<br />
***Host name(IP), port, show status, connection time out, start/stop<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages and nr. of massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928462016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T09:52:02Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
**Create Client /Server<br />
***Host name(IP), show status, connection time out<br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve and save:<br />
***Massages<br />
***Data-sets<br />
***Images<br />
**Sending control commands<br />
**loggs: showing, saving<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928452016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T09:42:22Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
***Ask for the status of the robotic device<br />
***Get the current position of the device tip <br />
***Send commands to the robot (simulator) to get to the new target position<br />
***Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
**Create Client /Server<br />
***Name, show status, <br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve:<br />
***Massages<br />
***Data-sets<br />
***Images<br />
**Control commands<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928442016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T09:41:09Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios:<br />
**Workflow01:<br />
- Ask for the status of the robotic device<br />
- Get the current position of the device tip <br />
- Send commands to the robot (simulator) to get to the new target position<br />
- Set /ask/ retrieve time stamps<br />
<br />
<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
**Create Client /Server<br />
***Name, show status, <br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve:<br />
***Massages<br />
***Data-sets<br />
***Images<br />
**Control commands<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928432016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T09:09:09Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios :<br />
**Workflow01:<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
**Create Client /Server<br />
***Name, show status, <br />
**Define Datatypes: Vector position, Status, etc..<br />
**Communication: Send and recieve:<br />
***Massages<br />
***Data-sets<br />
***Images<br />
**Control commands<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928422016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-10T09:00:00Z<p>Shery: adding more details for Approach</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
<h5>Robotic Devices</h5><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
#The Kuka LBR robot used in a MeVislab based research project.<br />
#The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
*Defined Scenarios :<br />
**Workflow01:<br />
<h5>MLab Interface</h5><br />
*Design and implement a generic interface for using OpenIGT commands in MeVislab network layer.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=928022016 Summer Project Week/MRI Manipulator2016-06-07T14:26:44Z<p>Shery: </p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices<br />
# How to use it in MeVisLab applications<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
# The <b>MRI_Manipulator</b>, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot in <b>MITIGATE</b>, a MeVislab based research project.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/Integrating/Using_OpenIGTLink_for_the_communications_of_Robotics_devices&diff=928012016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices2016-06-07T14:25:57Z<p>Shery: creating page</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
# The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot used in a MeVislab based research project.<br />
* Defined Scenarios :<br />
#Workflow01:<br />
#<br />
#<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=927992016 Summer Project Week/MRI Manipulator2016-06-07T14:21:13Z<p>Shery: creating the page</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* Longquan Chen<br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Obtaining a better understanding of OpenIGTLink and gathering practical experience:<br />
# How to use and integrate it in different robotic devices using:<br />
## MeVisLab applications<br />
## Slicer<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
*Defining different workflows for communication between robotic device and MeVislab applications, including sending/receiving strings, image sets and control commands for:<br />
# The MRI compatible Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot used in a MeVislab based research project.<br />
* Defined Scenarios :<br />
#Workflow01:<br />
#<br />
#<br />
<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be defined in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=927932016 Summer Project Week2016-06-07T14:05:42Z<p>Shery: Adding "2016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices "</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week open source hackathon is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
='''Logistics'''=<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.<br />
*'''Location:''' Heidelberg, Germany.<br />
**'''Monday''' at German Cancer Research Center - DKFZ<br />
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS<br />
**'''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html<br />
*'''Registration Fee:''' Euro 650 (after April 26, 2016)<br />
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.<br />
*Preparatory Conference Calls: <br />
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])<br />
**Call #1 Tuesday, May 10, 3pm Boston time.<br />
**Call #2 Tuesday, May 17, 3pm Boston time.<br />
**Call #3 Tuesday, May 31, 9am Boston time.<br />
**Call #4 Tuesday, Jun 7, 9am Boston time.<br />
**Call #5 Tuesday, Jun 14, 9am Boston time.<br />
<br />
='''Agenda'''=<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:7%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:3%" |Tuesday, June 21 <br> IPCAI<br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"| DKFZ Discussions<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|[[Breakout Session/Shared Software Platform for Ultrasound-Guided Medical Interventions]]<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| Progress Review<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch and adjourn<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"| Welcome! <br> Project Introductions<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"| 3:30pm: [[Breakout Session/Slicer Extensions]]<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
='''Background'''=<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
<br />
='''Equipment'''=<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
*[[2016_Summer_Project_Week:Equipment_Requests|Specialized equipment that people would like to have]]<br />
<br />
='''Projects'''=<br />
* Use this [[2016_Summer_Project_Week_Template | template]] for project pages<br />
<br />
=== IGT ===<br />
* [[2016 Summer Project Week/Integrating/Using OpenIGTLink for the communications of Robotics devices | Integrating/Using OpenIGTLink for the communications of Robotics devices]] (Scheherazade Kraß, Longquan Chen)<br />
* [[2016 Summer Project Week/Needle Segmentation from MRI | Needle Segmentation from MRI]] (Guillaume Pernelle, Andre Mastmeyer, Tina Kapur, Paolo Zaffino)<br />
* [[2016 Summer Project Week/Guided Ultrasound Calibration | Guided Ultrasound Calibration]] (Elvis Chen, Inês Prata, Tamas Ungi)<br />
* [[2016 Summer Project Week/Tracked Ultrasound Standardization | Tracked Ultrasound Standardization II: The Implementering]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Longquan Chen, Adam Rankin, Thomas Kirchner, Janne Beate Bakeng)<br />
* [[2016 Summer Project Week/Integrating PLUS in applications using OpenIGTLink | Integrating PLUS in applications using OpenIGTLink]] (Christian Askeland, Janne Beate Bakeng, Ole Vegard Solberg, Jon Eiesland, Longquan Chen, Simon Drouin)<br />
* [[2016 Summer Project Week/SliceTracker | SliceTracker for data collection and prostate biopsy support ]] (Christian Herz, Peter Behringer, Andrey Fedorov)<br />
* [[2016 Summer Project Week/Sacral Neuromodulation | Sacral Neuromodulation ]] (Javier Pascau, Rocío López, Tamas Ungi)<br />
* [[2016 Summer Project Week/Intra-procedural prostate motion characterization | Prostate Motion Characterization ]] (Peter Behringer, Christian Herz, Andrey Fedorov)<br />
* [[2016 Summer Project Week/Structural-functional measurements | Structural - Functional Relationship Measurements of Tractography Data with fMRI ]] (Lauren J. O'Donnell, Yannick Suter)<br />
<br />
=== Infrastructure ===<br />
* [[2016 Summer Project Week/3D Lasso Selection | Implementation, and testing performance, of 3-D Lasso selection within the segmentation editor infrastructure ]] (Davide Punzo, Csaba Pinter, Andras Lasso, Steve Pieper?)<br />
* [[2016 Summer Project Week/Segmentations Integration | Integration of Segmentations infrastructure and related modules to Slicer core]] (Csaba Pinter, Andras Lasso)<br />
* [[2016 Summer Project Week/DICOM Tractography Results | Finalizing DICOM Tractography Results implementation in DCMTK for BWH project]] (Michael Onken)<br />
<br />
=== Augmented Reality ===<br />
* [[2016 Summer Project Week/VRPN Integration | VRPN Integration]] (Dženan Zukić)<br />
* [[2016 Summer Project Week/OpenVR_integration | OpenVR Integration]] (Adam Rankin)<br />
* [[2016 Summer Project Week/AR with a tablet device in the surgical room | AR with a tablet device in the surgical room]] (Javier Pascau, David García)<br />
<br />
=== Cloud ===<br />
* [[2016 Summer Project Week/medical imaging webapp | Medical Imaging WebApp Software]] (Steve Pieper, Marco Nolden, Hans Meine)<br />
<br />
=== Informatics ===<br />
* [[2016 Summer Project Week/DICOM Parametric Maps | Finalizing DICOM Parametric Map implementation in DCMTK for QIICR project]] (Michael Onken, Jan Schlamelcher)<br />
* [[2016 Summer Project Week/dcmqi | DICOM for Quantitative Imaging (dcmqi) library]] (Andrey Fedorov, Christian Herz, Marco Nolden, Hans Meine, Csaba Pinter, Steve Pieper, et al)<br />
* [[2016 Summer Project Week/MeVisLab SEG Colors | Support Reading and Writing DICOM Tags for SEG Colors]] (Hans Meine)<br />
* [[2016 Summer Project Week/Segmentation Editor and Terminology | Segmentation Editor and Terminology]] (Nicole Aucoin, Andrey Fedorov, Csaba Pinter)<br />
<br />
=== Tutorial===<br />
* [[2016 Summer Project Week/CameraTutorial | How to use Basler cameras for medical applications]] (Peter Behringer, Santhirarajah Mathimugan, Steve Pieper?)<br />
<br />
= '''Registrants''' =<br />
<br />
'''REGISTRATION:''' Please add your name to this list if you are definitely planning to attend. If you are not already on it, please add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]. We need to know the number of people at DKFZ, so if you are there on Monday, please add "(Mon)" next to your name. Official registration for the event is through the CARS conference at http://www.cars-int.org/cars_2016/registration.html -- which you can do now or onsite.<br />
<br />
#Tina Kapur, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA (Mon)<br />
# Dženan Zukić, Kitware, USA<br />
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal. (Mon)<br />
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School (Mon)<br />
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)<br />
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Steve Pieper, Isomics, Inc., USA (Mon)<br />
# Nicole Aucoin, Brigham and Women's Hospital (Mon)<br />
# Simon Drouin, Montreal Neurological Institute (Mon)<br />
# Thomas Kirchner, German Cancer Research Center (Mon)<br />
# Elvis Chen, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)<br />
# Adam Rankin, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)<br />
# Christian Askeland, SINTEF, Norway (Mon)<br />
# Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany<br />
# Longquan Chen, BWH/HMS, Boston, USA (Mon)<br />
# Davide Punzo, Kapteyn Astronomical Institute, Netherlands (Mon)<br />
# Lauren O'Donnell, BWH/HMS<br />
# Yannick Suter, BWH/HMS (Mon)<br />
# Junichi Tokuda, BWH/HMS (Mon)<br />
# Sarah Frisken, BWH/HMS (Mon)<br />
# Prashin Unadkat, BWH/HMS<br />
# Anna Roethe, Charite, Berlin<br />
# Michael Onken, Open Connections, Germany (Mon)<br />
#Jan Schlamelcher, Open Connections/OFFIS, Germany<br />
# Janne Beate Bakeng, SINTEF, Norway<br />
# Ole Vegard Solberg, SINTEF, Norway<br />
# Jon Eiesland, SINTEF, Norway<br />
# Tamas Ungi, Queen's University, Canada (Mon)<br />
# Andras Lasso, Queen's University, Canada (Mon)<br />
# Csaba Pinter, Queen's University, Canada (Mon)<br />
# Thomas Vaughan, Queen's University, Canada (Mon)<br />
#Gabor Fichtinger, Queen's University, Canada<br />
# Javier Pascau, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Verónica García-Vazquez, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Mónica García-Sevilla, Universidad Carlos III de Madrid, Spain (Mon)<br />
# David García-Mato, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Rocío López-Velazco, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Raúl San José, BWH/HMS, Boston<br />
# Pietro Nardeli, BWH/HMS, Boston<br />
# Andrey Fedorov, BWH/HMS, Boston (Mon)<br />
# Christian Herz, BWH/HMS, Boston (Mon)<br />
# Frank Lindseth, NTNU/SINTEF, Norway<br />
# Peter Behringer, Basler AG, Germany<br />
# Santhirarajah Mathimugan, Basler AG, Germany<br />
# Koji Kobayashi, Vocsis Corporation, Japan<br />
# David Black, University of Bremen / Fraunhofer MEVIS, Germany (Mon)<br />
#William Wells, BWH/HMS (Mon)<br />
# Attila Nagy, University of Szeged, Hungary (Mon)<br />
<br />
<br />
'''Please don't forget to add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].'''</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=927702016 Summer Project Week2016-06-06T16:26:28Z<p>Shery: monir</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week open source hackathon is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
='''Logistics'''=<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.<br />
*'''Location:''' Heidelberg, Germany.<br />
**'''Monday''' at German Cancer Research Center - DKFZ<br />
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS<br />
**'''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html<br />
*'''Registration Fee:''' Euro 650 (after April 26, 2016)<br />
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.<br />
*Preparatory Conference Calls: <br />
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])<br />
**Call #1 Tuesday, May 10, 3pm Boston time.<br />
**Call #2 Tuesday, May 17, 3pm Boston time.<br />
**Call #3 Tuesday, May 31, 9am Boston time.<br />
**Call #4 Tuesday, Jun 7, 9am Boston time.<br />
**Call #5 Tuesday, Jun 14, 9am Boston time.<br />
<br />
='''Agenda'''=<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:7%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:3%" |Tuesday, June 21 <br> IPCAI<br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"| DKFZ Discussions<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|[[Breakout Session: Shared Software Platform for Ultrasound-Guided Medical Interventions]]<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| Progress Review<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch and adjourn<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"| Welcome! <br> Project Introductions<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"| 3:30pm: Breakout Session: Slicer Extensions<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
='''Background'''=<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
<br />
='''Equipment'''=<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
*[[2016_Summer_Project_Week:Equipment_Requests|Specialized equipment that people would like to have]]<br />
<br />
='''Projects'''=<br />
* Use this [[2016_Summer_Project_Week_Template | template]] for project pages<br />
<br />
=== IGT ===<br />
* [[2016 Summer Project Week/MRI Manipulatorr | Integrating/Using OpenIGTLink for the communications of Robotics devices]] (Scheherazade Kraß, Longquan Chen)<br />
* [[2016 Summer Project Week/Needle Segmentation from MRI | Needle Segmentation from MRI]] (Tina Kapur, Andre Mastmeyer, Guillaume Pernelle)<br />
* [[2016 Summer Project Week/Guided Ultrasound Calibration | Guided Ultrasound Calibration]] (Elvis Chen, Inês Prata, Tamas Ungi)<br />
* [[2016 Summer Project Week/Tracked Ultrasound Standardization | Tracked Ultrasound Standardization II: The Implementering]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Longquan Chen, Adam Rankin, Thomas Kirchner, Janne Beate Bakeng)<br />
* [[2016 Summer Project Week/Integrating PLUS in applications using OpenIGTLink | Integrating PLUS in applications using OpenIGTLink]] (Christian Askeland, Janne Beate Bakeng, Ole Vegard Solberg, Jon Eiesland, Longquan Chen, Simon Drouin)<br />
* [[2016 Summer Project Week/SliceTracker | SliceTracker for data collection and prostate biopsy support ]] (Christian Herz, Peter Behringer, Andrey Fedorov)<br />
* [[2016 Summer Project Week/Sacral Neuromodulation | Sacral Neuromodulation ]] (Javier Pascau, Rocío López, Tamas Ungi)<br />
* [[2016 Summer Project Week/Intra-procedural prostate motion characterization | Prostate Motion Characterization ]] (Peter Behringer, Christian Herz, Andrey Fedorov)<br />
<br />
=== Infrastructure ===<br />
* [[2016 Summer Project Week/3D Lasso Selection | Implementation, and testing performance, of 3-D Lasso selection within the segmentation editor infrastructure ]] (Davide Punzo, Csaba Pinter, Andras Lasso, Steve Pieper?)<br />
* [[2016 Summer Project Week/Segmentations Integration | Integration of Segmentations infrastructure and related modules to Slicer core]] (Csaba Pinter, Andras Lasso)<br />
* [[2016 Summer Project Week/DICOM Tractography Results | Finalizing DICOM Tractography Results implementation in DCMTK for BWH project]] (Michael Onken)<br />
<br />
=== Augmented Reality ===<br />
* [[2016 Summer Project Week/VRPN Integration | VRPN Integration]] (Dženan Zukić)<br />
* [[2016 Summer Project Week/OpenVR_integration | OpenVR Integration]] (Adam Rankin)<br />
* [[2016 Summer Project Week/AR with a tablet device in the surgical room | AR with a tablet device in the surgical room]] (Javier Pascau, David García)<br />
<br />
=== Cloud ===<br />
* [[2016 Summer Project Week/medical imaging webapp | Medical Imaging WebApp Software]] (Steve Pieper, Marco Nolden, Hans Meine)<br />
<br />
=== Informatics ===<br />
* [[2016 Summer Project Week/DICOM Parametric Maps | Finalizing DICOM Parametric Map implementation in DCMTK for QIICR project]] (Michael Onken, Jan Schlamelcher)<br />
* [[2016 Summer Project Week/dcmqi | DICOM for Quantitative Imaging (dcmqi) library]] (Andrey Fedorov, Christian Herz, Marco Nolden, Hans Meine, Csaba Pinter, Steve Pieper, et al)<br />
* [[2016 Summer Project Week/MeVisLab SEG Colors | Support Reading and Writing DICOM Tags for SEG Colors]] (Hans Meine)<br />
* [[2016 Summer Project Week/Segmentation Editor and Terminology | Segmentation Editor and Terminology]] (Nicole Aucoin, Andrey Fedorov, Csaba Pinter)<br />
<br />
=== Tutorial===<br />
* [[2016 Summer Project Week/CameraTutorial | How to use Basler cameras for medical applications]] (Peter Behringer, Santhirarajah Mathimugan, Steve Pieper?)<br />
<br />
= '''Registrants''' =<br />
<br />
'''REGISTRATION:''' Please add your name to this list if you are definitely planning to attend. If you are not already on it, please add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]. We need to know the number of people at DKFZ, so if you are there on Monday, please add "(Mon)" next to your name. Official registration for the event is through the CARS conference at http://www.cars-int.org/cars_2016/registration.html -- which you can do now or onsite.<br />
<br />
#Tina Kapur, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA (Mon)<br />
# Dženan Zukić, Kitware, USA<br />
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal. (Mon)<br />
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School (Mon)<br />
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)<br />
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Steve Pieper, Isomics, Inc., USA (Mon)<br />
# Nicole Aucoin, Brigham and Women's Hospital (Mon)<br />
# Simon Drouin, Montreal Neurological Institute (Mon)<br />
# Thomas Kirchner, German Cancer Research Center (Mon)<br />
# Elvis Chen, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)<br />
# Adam Rankin, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)<br />
# Christian Askeland, SINTEF, Norway (Mon)<br />
# Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany<br />
# Longquan Chen, BWH/HMS, Boston, USA (Mon)<br />
# Davide Punzo, Kapteyn Astronomical Institute, Netherlands (Mon)<br />
# Lauren O'Donnell, BWH/HMS<br />
# Yannick Suter, BWH/HMS<br />
# Junichi Tokuda, BWH/HMS (Mon)<br />
# Sarah Frisken, BWH/HMS (Mon)<br />
# Prashin Unadkat, BWH/HMS<br />
# Anna Roethe, Charite, Berlin<br />
# Michael Onken, Open Connections, Germany (Mon)<br />
#Jan Schlamelcher, Open Connections/OFFIS, Germany<br />
# Janne Beate Bakeng, SINTEF, Norway<br />
# Ole Vegard Solberg, SINTEF, Norway<br />
# Jon Eiesland, SINTEF, Norway<br />
# Tamas Ungi, Queen's University, Canada (Mon)<br />
# Andras Lasso, Queen's University, Canada (Mon)<br />
# Csaba Pinter, Queen's University, Canada (Mon)<br />
# Thomas Vaughan, Queen's University, Canada (Mon)<br />
#Gabor Fichtinger, Queen's University, Canada<br />
# Javier Pascau, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Verónica García-Vazquez, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Mónica García-Sevilla, Universidad Carlos III de Madrid, Spain (Mon)<br />
# David García-Mato, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Rocío López-Velazco, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Raúl San José, BWH/HMS, Boston<br />
# Pietro Nardeli, BWH/HMS, Boston<br />
# Andrey Fedorov, BWH/HMS, Boston (Mon)<br />
# Christian Herz, BWH/HMS, Boston (Mon)<br />
# Frank Lindseth, NTNU/SINTEF, Norway<br />
# Peter Behringer, Basler AG, Germany<br />
# Santhirarajah Mathimugan, Basler AG, Germany<br />
# Koji Kobayashi, Vocsis Corporation, Japan<br />
# David Black, University of Bremen / Fraunhofer MEVIS, Germany (Mon)<br />
<br />
<br />
'''Please don't forget to add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].'''</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=927642016 Summer Project Week2016-06-06T12:43:58Z<p>Shery: correcting the link for: "Integrating/Using OpenIGTLink for the communications of Robotics devices" to : 2016 Summer Project Week/MRI Manipulator</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week open source hackathon is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
='''Logistics'''=<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.<br />
*'''Location:''' Heidelberg, Germany.<br />
**'''Monday''' at German Cancer Research Center - DKFZ<br />
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS<br />
**'''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html<br />
*'''Registration Fee:''' Euro 650 (after April 26, 2016)<br />
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.<br />
*Preparatory Conference Calls: <br />
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])<br />
**Call #1 Tuesday, May 10, 3pm Boston time.<br />
**Call #2 Tuesday, May 17, 3pm Boston time.<br />
**Call #3 Tuesday, May 31, 9am Boston time.<br />
**Call #4 Tuesday, Jun 7, 9am Boston time.<br />
**Call #5 Tuesday, Jun 14, 9am Boston time.<br />
<br />
='''Agenda'''=<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:7%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:3%" |Tuesday, June 21 <br> IPCAI<br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"| DKFZ Discussions<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|[[Breakout Session: Shared Software Platform for Ultrasound-Guided Medical Interventions]]<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| Progress Review<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch and adjourn<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"| Welcome! <br> Project Introductions<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"| 3:30pm: Breakout Session: Slicer Extensions<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
='''Background'''=<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
<br />
='''Equipment'''=<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
*[[2016_Summer_Project_Week:Equipment_Requests|Specialized equipment that people would like to have]]<br />
<br />
='''Projects'''=<br />
* Use this [[2016_Summer_Project_Week_Template | template]] for project pages<br />
<br />
=== IGT ===<br />
* [[2016 Summer Project Week/MRI Manipulator | Integrating/Using OpenIGTLink for the communications of Robotics devices]] (Scheherazade Kraß, Longquan Chen)<br />
* [[2016 Summer Project Week/Needle Segmentation from MRI | Needle Segmentation from MRI]] (Tina Kapur, Andre Mastmeyer, Guillaume Pernelle)<br />
* [[2016 Summer Project Week/Guided Ultrasound Calibration | Guided Ultrasound Calibration]] (Elvis Chen, Inês Prata, Tamas Ungi)<br />
* [[2016 Summer Project Week/Tracked Ultrasound Standardization | Tracked Ultrasound Standardization II: The Implementering]] (Andras Lasso, Christian Askeland, Simon Drouin, Junichi Tokuda, Longquan Chen, Adam Rankin, Thomas Kirchner, Janne Beate Bakeng)<br />
* [[2016 Summer Project Week/Integrating PLUS in applications using OpenIGTLink | Integrating PLUS in applications using OpenIGTLink]] (Christian Askeland, Janne Beate Bakeng, Ole Vegard Solberg, Jon Eiesland, Longquan Chen, Simon Drouin)<br />
* [[2016 Summer Project Week/SliceTracker | SliceTracker for data collection and prostate biopsy support ]] (Christian Herz, Peter Behringer, Andrey Fedorov)<br />
* [[2016 Summer Project Week/Sacral Neuromodulation | Sacral Neuromodulation ]] (Javier Pascau, Rocío López, Tamas Ungi)<br />
* [[2016 Summer Project Week/Intra-procedural prostate motion characterization | Prostate Motion Characterization ]] (Peter Behringer, Christian Herz, Andrey Fedorov)<br />
<br />
=== Infrastructure ===<br />
* [[2016 Summer Project Week/3D Lasso Selection | Implementation, and testing performance, of 3-D Lasso selection within the segmentation editor infrastructure ]] (Davide Punzo, Csaba Pinter, Andras Lasso, Steve Pieper?)<br />
* [[2016 Summer Project Week/Segmentations Integration | Integration of Segmentations infrastructure and related modules to Slicer core]] (Csaba Pinter, Andras Lasso)<br />
* [[2016 Summer Project Week/DICOM Tractography Results | Finalizing DICOM Tractography Results implementation in DCMTK for BWH project]] (Michael Onken)<br />
<br />
=== Augmented Reality ===<br />
* [[2016 Summer Project Week/VRPN Integration | VRPN Integration]] (Dženan Zukić)<br />
* [[2016 Summer Project Week/OpenVR_integration | OpenVR Integration]] (Adam Rankin)<br />
* [[2016 Summer Project Week/AR with a tablet device in the surgical room | AR with a tablet device in the surgical room]] (Javier Pascau, David García)<br />
<br />
=== Cloud ===<br />
* [[2016 Summer Project Week/medical imaging webapp | Medical Imaging WebApp Software]] (Steve Pieper, Marco Nolden, Hans Meine)<br />
<br />
=== Informatics ===<br />
* [[2016 Summer Project Week/DICOM Parametric Maps | Finalizing DICOM Parametric Map implementation in DCMTK for QIICR project]] (Michael Onken, Jan Schlamelcher)<br />
* [[2016 Summer Project Week/dcmqi | DICOM for Quantitative Imaging (dcmqi) library]] (Andrey Fedorov, Christian Herz, Marco Nolden, Hans Meine, Csaba Pinter, Steve Pieper, et al)<br />
* [[2016 Summer Project Week/MeVisLab SEG Colors | Support Reading and Writing DICOM Tags for SEG Colors]] (Hans Meine)<br />
* [[2016 Summer Project Week/Segmentation Editor and Terminology | Segmentation Editor and Terminology]] (Nicole Aucoin, Andrey Fedorov, Csaba Pinter)<br />
<br />
=== Tutorial===<br />
* [[2016 Summer Project Week/CameraTutorial | How to use Basler cameras for medical applications]] (Peter Behringer, Santhirarajah Mathimugan, Steve Pieper?)<br />
<br />
= '''Registrants''' =<br />
<br />
'''REGISTRATION:''' Please add your name to this list if you are definitely planning to attend. If you are not already on it, please add yourself to the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]. We need to know the number of people at DKFZ, so if you are there on Monday, please add "(Mon)" next to your name. Official registration for the event is through the CARS conference at http://www.cars-int.org/cars_2016/registration.html -- which you can do now or onsite.<br />
<br />
#Tina Kapur, Brigham and Women's Hospital, Harvard Medical School (BWH/HMS), Boston, USA (Mon)<br />
# Dženan Zukić, Kitware, USA<br />
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal. (Mon)<br />
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School (Mon)<br />
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany (Mon)<br />
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy (Mon)<br />
# Steve Pieper, Isomics, Inc., USA (Mon)<br />
# Nicole Aucoin, Brigham and Women's Hospital (Mon)<br />
# Simon Drouin, Montreal Neurological Institute (Mon)<br />
# Thomas Kirchner, German Cancer Research Center (Mon)<br />
# Elvis Chen, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)<br />
# Adam Rankin, [http://www.imaging.robarts.ca/petergrp/Research Robarts Research Institute], Canada (Mon)<br />
# Christian Askeland, SINTEF, Norway (Mon)<br />
# Hans Meine, University of Bremen / Fraunhofer MEVIS, Germany<br />
# Longquan Chen, BWH/HMS, Boston, USA (Mon)<br />
# Davide Punzo, Kapteyn Astronomical Institute, Netherlands (Mon)<br />
# Lauren O'Donnell, BWH/HMS<br />
# Yannick Suter, BWH/HMS<br />
# Junichi Tokuda, BWH/HMS (Mon)<br />
# Sarah Frisken, BWH/HMS (Mon)<br />
# Prashin Unadkat, BWH/HMS<br />
# Anna Roethe, Charite, Berlin<br />
# Michael Onken, Open Connections, Germany (Mon)<br />
#Jan Schlamelcher, Open Connections/OFFIS, Germany<br />
# Janne Beate Bakeng, SINTEF, Norway<br />
# Ole Vegard Solberg, SINTEF, Norway<br />
# Jon Eiesland, SINTEF, Norway<br />
# Tamas Ungi, Queen's University, Canada (Mon)<br />
# Andras Lasso, Queen's University, Canada (Mon)<br />
# Csaba Pinter, Queen's University, Canada (Mon)<br />
# Thomas Vaughan, Queen's University, Canada (Mon)<br />
#Gabor Fichtinger, Queen's University, Canada<br />
# Javier Pascau, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Verónica García-Vazquez, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Mónica García-Sevilla, Universidad Carlos III de Madrid, Spain (Mon)<br />
# David García-Mato, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Rocío López-Velazco, Universidad Carlos III de Madrid, Spain (Mon)<br />
# Raúl San José, BWH/HMS, Boston<br />
# Pietro Nardeli, BWH/HMS, Boston<br />
# Andrey Fedorov, BWH/HMS, Boston (Mon)<br />
# Christian Herz, BWH/HMS, Boston (Mon)<br />
# Frank Lindseth, NTNU/SINTEF, Norway<br />
# Peter Behringer, Basler AG, Germany<br />
# Santhirarajah Mathimugan, Basler AG, Germany<br />
# Koji Kobayashi, Vocsis Corporation, Japan<br />
# David Black, University of Bremen / Fraunhofer MEVIS, Germany (Mon)</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=925422016 Summer Project Week/MRI Manipulator2016-05-13T10:45:40Z<p>Shery: /* Project Description */</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* <br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Integrating/Using OpenIGTLink for the communications of robotic devices:<br />
# The <b>MRI_Manipulator</b>, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot in <b>MITIGATE</b>, a MeVislab based research project.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
#<b>MRI_Manipulator</b>: The system is based on MeVisLab, the robot is controlled with a pneumatic motor via PLC controller, the movement commands are transferred through an Emulator. The goal is making this system working with OpenIGTLink (in Simulation).<br />
#<b>MITIGATE</b>: The overall objective of the EU-project MITIGATE is to develop and validate an integrated closed-loop process to effectively treat metastatic gastrointestinal stromal tumour (GIST) patients resistant to the currently available class of medication. We are involved in WP7 "Minimally Invasive Therapy" and will develop a control software for robot-assisted minimally invasive interventions. There we have to deal with DynaCT images from an interventional Artis Zeego External Link and steer a Kuka LBR External Link robot that holds the interventional device. The gola is to define workflows for robot communications and implement this via OpenIGTLink. See: https://www.youtube.com/watch?v=8BeerXldDq0<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=925412016 Summer Project Week/MRI Manipulator2016-05-13T08:40:07Z<p>Shery: adding film</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* <br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Integrating/Using OpenIGTLink for the communications of robotic devices:<br />
# The <b>MRI_Manipulator</b>, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot in <b>MITIGATE</b>, a MeVislab based research project.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
#<b>MRI_Manipulator</b>: The system is based on MeVisLab, the robot is controlled with a pneumatic motor via PLC controller, the movement commands are transferred through an Emulator. The goal is making this system working with OpenIGTLink.<br />
#<b>MITIGATE</b>: The overall objective of the EU-project MITIGATE is to develop and validate an integrated closed-loop process to effectively treat metastatic gastrointestinal stromal tumour (GIST) patients resistant to the currently available class of medication. We are involved in WP7 "Minimally Invasive Therapy" and will develop a control software for robot-assisted minimally invasive interventions. There we have to deal with DynaCT images from an interventional Artis Zeego External Link and steer a Kuka LBR External Link robot that holds the interventional device. The gola is to define workflows for robot communications and implement this via OpenIGTLink. See: https://www.youtube.com/watch?v=8BeerXldDq0<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=925402016 Summer Project Week/MRI Manipulator2016-05-13T08:28:20Z<p>Shery: adding more details for Approach</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* <br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Integrating/Using OpenIGTLink for the communications of robotic devices:<br />
# The <b>MRI_Manipulator</b>, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot in <b>MITIGATE</b>, a MeVislab based research project.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
#<b>MRI_Manipulator</b>: The system is based on MeVisLab, the robot is controlled with a pneumatic motor via PLC controller, the movement commands are transferred through an Emulator. The goal is making this system working with OpenIGTLink.<br />
#<b>MITIGATE</b>: The overall objective of the EU-project MITIGATE is to develop and validate an integrated closed-loop process to effectively treat metastatic gastrointestinal stromal tumour (GIST) patients resistant to the currently available class of medication. We are involved in WP7 "Minimally Invasive Therapy" and will develop a control software for robot-assisted minimally invasive interventions. There we have to deal with DynaCT images from an interventional Artis Zeego External Link and steer a Kuka LBR External Link robot that holds the interventional device. The gola is to define workflows for robot communications and implement this via OpenIGTLink.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=925342016 Summer Project Week/MRI Manipulator2016-05-12T12:10:54Z<p>Shery: Adding more details under objective</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* <br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Integrating/Using OpenIGTLink for the communications of robotic devices:<br />
# The MRI Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
# The Kuka LBR robot and MITGATE, a MeVislab based software.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
* The system is based on MeVisLab, the robot is controlled with a pneumatic motor via PLC controller, the movement commands are transferred through an Emulator. The goal is making this system working with OpenIGTLink.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=925332016 Summer Project Week2016-05-12T12:08:49Z<p>Shery: updating project title</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
==Logistics==<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.<br />
*'''Location:''' Heidelberg, Germany.<br />
**'''Monday''' at German Cancer Research Center - DKFZ<br />
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS<br />
**'''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html<br />
*'''Registration Fee:''' Euro 650 (after April 26, 2016)<br />
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.<br />
*Preparatory Conference Calls: <br />
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])<br />
**Call #1 Tuesday, May 10, 3pm Boston time.<br />
**Call #2 Tuesday, May 17, 3pm Boston time.<br />
<br />
==Agenda==<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:10%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| Progress Review<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch and adjourn<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"| Welcome! <br> Project Introductions<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
== '''Background''' ==<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
<br />
==Equipment==<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
<br />
=Projects=<br />
* [[2016_Summer_Project_Week_Template | Template for project pages]]<br />
<br />
#[[2016_VRPN_Integration | VRPN Integration]]<br />
#Needle Segmentation from MRI (Tina Kapur, Andre Mastmeyer, Guillaume Pernelle)<br />
#Guided Ultrasound Calibration (Elvis Chen, Robarts Research) http://link.springer.com/article/10.1007/s11548-016-1390-7<br />
#[[2016_MRI_Manipulator | Integrating/Using OpenIGTLink for the communications of Robotics devices.]] (Scheherazade Kraß, MIC of university of Bremen, Germany)<br />
<br />
= '''Registrants''' =<br />
<br />
'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html and then add your name to this list. DKFZ members who will only be attending Monday should only add their name to this list.<br />
<br />
#Tina Kapur, BWH/HMS, Boston, USA<br />
# Dženan Zukić, Kitware, USA<br />
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal.<br />
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School<br />
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany<br />
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy<br />
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy<br />
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy<br />
# Steve Pieper, Isomics, Inc., USA<br />
# Nicole Aucoin, Brigham and Women's Hospital<br />
# Simon Drouin, Montreal Neurological Institute<br />
# Thomas Kirchner, German Cancer Research Center<br />
# Elvis Chen, Robarts Research Institute, Canada<br />
# Christian Askeland, SINTEF, Norway</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=925302016 Summer Project Week2016-05-11T21:48:28Z<p>Shery: small correction: 5 DoF</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
==Logistics==<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.<br />
*'''Location:''' Heidelberg, Germany.<br />
**'''Monday''' at German Cancer Research Center - DKFZ<br />
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS<br />
**'''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html<br />
*'''Registration Fee:''' Euro 650 (after April 26, 2016)<br />
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.<br />
*Preparatory Conference Calls: <br />
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])<br />
**Call #1 Tuesday, May 10, 3pm Boston time.<br />
**Call #2 Tuesday, May 17, 3pm Boston time.<br />
<br />
==Agenda==<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:10%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| Progress Review<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch and adjourn<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"| Welcome! <br> Project Introductions<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
== '''Background''' ==<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
<br />
==Equipment==<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
<br />
=Projects=<br />
* [[2016_Summer_Project_Week_Template | Template for project pages]]<br />
<br />
#[[2016_VRPN_Integration | VRPN Integration]]<br />
#Needle Segmentation from MRI (Tina Kapur, Andre Mastmeyer, Guillaume Pernelle)<br />
#Guided Ultrasound Calibration (Elvis Chen, Robarts Research) http://link.springer.com/article/10.1007/s11548-016-1390-7<br />
#[[2016_MRI_Manipulator | Integrating/Using OpenIGTLink for the communications of the MRI Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.]] (Scheherazade Kraß, MIC of university of Bremen, Germany)<br />
<br />
= '''Registrants''' =<br />
<br />
'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html and then add your name to this list. DKFZ members who will only be attending Monday should only add their name to this list.<br />
<br />
#Tina Kapur, BWH/HMS, Boston, USA<br />
# Dženan Zukić, Kitware, USA<br />
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal.<br />
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School<br />
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany<br />
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy<br />
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy<br />
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy<br />
# Steve Pieper, Isomics, Inc., USA<br />
# Nicole Aucoin, Brigham and Women's Hospital<br />
# Simon Drouin, Montreal Neurological Institute<br />
# Thomas Kirchner, German Cancer Research Center<br />
# Elvis Chen, Robarts Research Institute, Canada<br />
# Christian Askeland, SINTEF, Norway</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=925292016 Summer Project Week/MRI Manipulator2016-05-11T21:47:10Z<p>Shery: small correction: 5 DoF</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* <br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Integrating/Using OpenIGTLink for the communications of the MRI Manipulator, a 5 DoF robot for performing transrectal prostate biopsies.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
* The system is based on MeVisLab, the robot is controlled with a pneumatic motor via PLC controller, the movement commands are transferred through an Emulator. The goal is making this system working with OpenIGTLink.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week/MRI_Manipulator&diff=925282016 Summer Project Week/MRI Manipulator2016-05-11T21:43:53Z<p>Shery: Creating the page with the given template and needed details.</p>
<hr />
<div>__NOTOC__<br />
<gallery><br />
Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]<br />
</gallery><br />
<br />
==Key Investigators==<br />
* Scheherazade Kraß<br />
* <br />
<br />
==Project Description==<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
* Integrating/Using OpenIGTLink for the communications of the MRI Manipulator, a 6 DoF robot for performing transrectal prostate biopsies.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
* The system is based on MeVisLab, the robot is controlled with a pneumatic motor via PLC controller, the movement commands are transferred through an Emulator. The goal is making this system working with OpenIGTLink.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
* to be started in the project week.<br />
</div><br />
</div></div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=925272016 Summer Project Week2016-05-11T21:32:29Z<p>Shery: adding my project: Integrating/Using OpenIGTLink for the communications of the MRI Manipulator, a 6 DoF robot for performing transrectal prostate biopsies</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week is being held in conjunction with the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS) and the [http://www.ipcai.org/ IPCAI 2016] conferences in Heidelberg, Germany. Please go through this page for information, and if you have questions, please contact [https://www.spl.harvard.edu/pages/People/tkapur Tina Kapur, PhD].<br />
<br />
==Logistics==<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on Tuesday June 21st to attend IPCAI.<br />
*'''Location:''' Heidelberg, Germany.<br />
**'''Monday''' at German Cancer Research Center - DKFZ<br />
**'''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS<br />
**'''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html<br />
*'''Registration Fee:''' Euro 650 (after April 26, 2016)<br />
*'''Hotel:''' After registration, you can book hotels using the CARS organization at http://germany.nethotels.com/info/heidelberg/events/cars/default_en.htm or on your own. Please remember that Project Week starts on Monday June 20th, even though the formal CARS/IPCAI program starts a day later, so you will need to pay attention while booking the hotel room.<br />
*Preparatory Conference Calls: <br />
**800-501-8979. The pin is 7327389. ([http://www.windstreambusiness.com/resources/user-guides/international-conferencing International dialing instructions are available here])<br />
**Call #1 Tuesday, May 10, 3pm Boston time.<br />
**Call #2 Tuesday, May 17, 3pm Boston time.<br />
<br />
==Agenda==<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:10%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"| <br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"| Progress Review<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch and adjourn<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"| Welcome! <br> Project Introductions<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
== '''Background''' ==<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
<br />
==Equipment==<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
<br />
=Projects=<br />
* [[2016_Summer_Project_Week_Template | Template for project pages]]<br />
<br />
#[[2016_VRPN_Integration | VRPN Integration]]<br />
#Needle Segmentation from MRI (Tina Kapur, Andre Mastmeyer, Guillaume Pernelle)<br />
#Guided Ultrasound Calibration (Elvis Chen, Robarts Research) http://link.springer.com/article/10.1007/s11548-016-1390-7<br />
#[[2016_MRI_Manipulator | Integrating/Using OpenIGTLink for the communications of the MRI Manipulator, a 6 DoF robot for performing transrectal prostate biopsies.]] (Scheherazade Kraß, MIC of university of Bremen, Germany)<br />
<br />
= '''Registrants''' =<br />
<br />
'''REGISTRATION:''' Please register for the CARS conference at http://www.cars-int.org/cars_2016/registration.html and then add your name to this list. DKFZ members who will only be attending Monday should only add their name to this list.<br />
<br />
#Tina Kapur, BWH/HMS, Boston, USA<br />
# Dženan Zukić, Kitware, USA<br />
# Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal.<br />
# Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School<br />
# Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany<br />
# Maria Francesca Spadea [http://www.imagenglab.com ImagEngLab], Italy<br />
# Paolo Zaffino [http://www.imagenglab.com ImagEngLab], Italy<br />
# Salvatore Scaramuzzino [http://www.imagenglab.com ImagEngLab], Italy<br />
# Steve Pieper, Isomics, Inc., USA<br />
# Nicole Aucoin, Brigham and Women's Hospital<br />
# Simon Drouin, Montreal Neurological Institute<br />
# Thomas Kirchner, German Cancer Research Center<br />
# Elvis Chen, Robarts Research Institute, Canada<br />
# Christian Askeland, SINTEF, Norway</div>Sheryhttps://www.na-mic.org/w/index.php?title=2016_Summer_Project_Week&diff=924702016 Summer Project Week2016-05-02T13:18:23Z<p>Shery: Adding me to the registrants List at the end of the page: Scheherazade Kraß,..</p>
<hr />
<div>__NOTOC__<br />
<br />
[[image:PW-Summer2016.png|300px]]<br />
<br><br><br />
=Welcome to the web page for the 23rd Project Week!=<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS), in Heidelberg, Germany.<br />
<br />
==Logistics==<br />
*'''Dates:''' Monday June 20th to Saturday June 25th, 2016, with one day break on June 21st for IPCAI.<br />
*'''Location:''' Heidelberg, Germany. '''Monday''' at German Cancer Research Center - DKFZ, '''Tuesday''' there is '''no''' organized Project Week activity due to IPCAI @ CARS, '''Wednesday-Saturday''' at the Congress Hall of CARS.<br />
*'''REGISTRATION:''' Please register by adding your name to the list at the end of this page<br />
*'''Registration Fee:''' TBD<br />
*'''Hotel:''' TBD<br />
<br />
==Agenda==<br />
<font color="maroon">Please note that on '''Tuesday''' there is no organized Project Week activity due to IPCAI @ CARS</font><br />
{|border="1"<br />
|-style="background:#b0d5e6;color:#02186f"<br />
!style="width:10%" |Time<br />
!style="width:15%" |Monday, June 20 <br> DKFZ <br />
!style="width:15%" |Wednesday, June 22 <br> Congress Hall of CARS<br />
!style="width:15%" |Thursday, June 23 <br> Congress Hall of CARS<br />
!style="width:15%" |Friday, June 24 <br> Congress Hall of CARS<br />
!style="width:15%" |Saturday, June 25 <br> Congress Hall of CARS<br />
|-<br />
|bgcolor="#ffffdd"|'''9:00am-12:00pm'''<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''12:00pm-1:00pm'''<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|bgcolor="#ffffaa"|Lunch<br />
|-<br />
|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|bgcolor="#ffffff"|<br />
|-<br />
|bgcolor="#ffffdd"|'''6:00pm'''<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"| <br />
|bgcolor="#f0e68b"|<br />
|bgcolor="#f0e68b"|<br />
|-<br />
|}<br />
<br />
== '''Background''' ==<br />
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.<br />
<br />
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event. <br />
<br />
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.<br />
<br />
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].<br />
<br />
A summary of all previous Project Events is available [[Project_Events#Past|here]].<br />
<br />
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.<br />
<br />
The 23rd Project Week is being held in conjunction with the [http://www.ipcai.org/ IPCAI 2016] conference that is hosted by the [http://www.cars-int.org/ 30th International Conference on Computer Assisted Radiology and Surgery] (CARS).<br />
<br />
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list].<br />
<br />
=Projects=<br />
* [[2016_Summer_Project_Week_Template | Template for project pages]]<br />
<br />
<br />
==Equipment==<br />
*[[2016_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)<br />
<br />
==Projects==<br />
===Image-Guided Therapy===<br />
===Feature Based Image Analysis===<br />
===Chest Imaging Platform===<br />
===QIICR===<br />
===Infrastructure===<br />
===Web===<br />
===Astronomy===<br />
<br />
== '''Registrants''' ==<br />
* Dženan Zukić, Kitware, USA<br />
* Ines Prata Machado, MIT Portugal Program (PhD Student), Lisbon, Portugal.<br />
* Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School<br />
* Scheherazade Kraß, PhD Student, [http://www.uni-bremen.de/ University of Bremen], [http://www.mic.uni-bremen.de/ Medical Image Computing]group, Germany<br />
Please add your name to the list. This is the registration mechanism for this project week.</div>Shery