View source for RSNA2011 Planning

==Quantitative Imaging Reading Room==
Tentative list of demonstrations for the RSNA 2011 Slicer booth. Needs further development and testing
'''Note: RSNA demo machines will need nvidia graphics cards to get GPU Volume Rendering'''
{| border="1"
|- bgcolor="#abcdef"
!Nb !!DEMO !! Datasets !! Notes !! Tools !! Slicer Modules
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||1 ||Data Loading and Visualization || [http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data]|| [[media:Slicer3_DataLoadingAndVisualization_UCSF2010_SoniaPujol.pdf‎‎ ‎ | Slicer3Visualization Tutorial]]|| Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking (?) || Data, Volumes, Models, Scene Views
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||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter
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||3|| Volume Rendering #1 Head || [[Media:RSNA2010_OsirixManixDataset.zip  |  Head CT Scan (Osirix Manix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views
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||4|| Volume Rendering #2 Abdomen|| [[Media:RSNA2010_OsirixPanoramixDataset.zip | Abdominal CT scan with AAA (Osirix Panoramix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views
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||5|| Volume Rendering #3 Thorax|| [[Media:RSNA2010_Lungs_Dataset.zip | Thoracic CT scan]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views
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||6|| Traumatic Brain Injury Case Analysis || [[Media:TBI-DemoScene-RSNA2011.zip  | TBI Demo Data (UCLA)]] ||  [http://wiki.na-mic.org/Wiki/index.php/File:TBISegmentation_TutorialContestSummer2011.pdf TBI tutorial] || ABC Segmentation, Model Maker, Editor, Annotations || Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views
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||7|| Radiotherapy || [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1828/popi-plan.tar.gz Plastimatch Dose Warping Data (MGH)] || [http://wiki.na-mic.org/Wiki/index.php/File:PlastimatchDoseWarping_TutorialContestSummer2011.pdf Plastimatch Tutorial] || Plastimatch, DVH extension (Csaba) || Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms, 
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||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]   || [[media:WhiteMatterExplorationNeurosurgicalPlanning_JHU2011_SoniaPujol.pdf‎ |Neurosurgical planning Tutorial]] || Diffusion ( Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display
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||9|| Longitudinal analysis of meningioma growth||  Change Tracker Data are part of the tutorial || [http://www.slicer.org/slicerWiki/images/a/a1/Slicer3.6-ChangeTrackerTutorial.pdf Change Tracker Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume
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||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Prostate Data updated for Slicer4, in progress]] || Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]]  || Linked Viewing || Annotations, Models, Crosshairs, CompareViews
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||11|| Brain Atlas || [http://www.na-mic.org/publications/item/view/2037 NAC Multi-modality MRI-based Atlas of the Brain] || Work in progress  - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views
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||12||  Abdomen Atlas|| [http://www.slicer.org/publications/item/view/1953 Knee Atlas] || Work in progress  - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views
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||13|| Knee Atlas Atlas ||  [http://www.slicer.org/publications/item/view/1918 Abdominal Atlas]|| Work in progress  - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views
|-
|}


== List of Slicer Modules involved in RSNA tutorials & demos==

*Data
*Welcome to Slicer
*Volumes
*Models
*Scene Views
*Annotations
*Volume Rendering
*Editor
*Model Maker
*Diffusion Tensor Estimation
*Diffusion Tensor Scalar Measurements
*Tractography Labelmap Seeding
*Tractography Fiducial Seeding
*Tractography Display
*BRAINSTools
*Change Tracker
*CropVolume
*Extensions:
**ABC
**Plastimatch
**EMSegmenter
**Skull Stripper

==Slicer4 Punchlist==
*Unresolved 
**em segmenter: task simple brain segmentation works, but slowly.
**ctkDICOMwidget
**skull stripper
**DWI to full brain tractography still does not work on mac
**Data module does not refresh after drag and drop. [http://www.na-mic.org/Bug/view.php?id=1510]
*Volume rendering: We have a plan
*Resolved
**brainsfit
**changetracker
**Center 3D view does not work properly [http://www.na-mic.org/Bug/view.php?id=1490]
**Render performance [http://www.na-mic.org/Bug/view.php?id=1519]: This is a big issue


*Documentation: We need all [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.0#Core_Modules core modules] reasonably well documented.
*Download pages: We do not have a lot of time left.
*See the [[Events:Slicer4-Review-07-2011#RSNA_2011_Targeted_Objectives|plan in July 2011]]

==Additional Material==
(under development)
* [[File:RSNA2010QIRRPoster.ppt]] poster FINAL  (ppt)
* [[File:RSNA2010QIRRPoster.pdf]] poster FINAL  (pdf)
* [[File:RSNA2010QIRR-LoopSlides.ppt]] Looping slide FINAL (ppt)
* [[File:RSNA2010QIRR-LoopSlides.pdf]] Looping slide FINAL (pdf)
* [[File:RSNA2010QIRRHandout.doc]] handouts FINAL (doc)
* [[File:RSNA2010QIRRHandout.pdf]] handouts FINAL (pdf)
* [[File:RSNA2011_16x9_slides_template.ppt]] 16x9 wide-screen slides template (courtesy Mike Halle) (ppt)

==People==
* Ron Kikinis (Sunday through Tuesday)
* Sonia Pujol (Saturday through Friday)
* Samira Farough (Saturday-Friday)
* Andriy Fedorov  (Saturday-Friday)
* Steve Pieper (Sunday through Wednesday?)
* Randy Gollub (Sunday-Monday)
* Valerie Humblet (Sunday-Tuesday)
* Kitware ( Julien Finet) 

[http://www.na-mic.org/Wiki/index.php?title=Events:Slicer4-Review-07-2011 Back to Slicer4 Review]