View source for Projects:ARRA:SlicerEM:AtlasCreator:Tests

== Atlas Creator Tests ==
Successful tests running the Atlas Creator are shown here.

=== 01: Fixed with CMTK on 6 Cases ===
* Machine: b2-t74-2
** CPU: 4x Xeon 3 GHz
** RAM: 32 GB
** OS: Linux 64
** AtlasCreator Version: 0.21

* No. of Cases: 6 (5 against 1 template)
* Template Type: Fixed
* Toolkit: CMTK
* Registration Type: Affine
* Runtime: 11 minutes

* Log: [[File:Log.txt]]
* MRML Scene: [[File:01cmtkFixed.zip]]

<gallery>
Image:01template.png|Fixed Template
Image:01atlas.png|Combined Atlas output
Image:01atlas3.png|Atlas for label 3 output
Image:01atlas4.png|Atlas for label 4 output
Image:01atlas5.png|Atlas for label 5 output
Image:01atlas6.png|Atlas for label 6 output
Image:01atlas8.png|Atlas for label 8 output
Image:01atlas10.png|Atlas for label 10 output
Image:01exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
Image:01exampleBeforeAndAfter2.png|Checkerboard: Before-Template and After-Template 2
</gallery>


=== 03: Dynamic with CMTK on 6 Cases ===
* Machine: sbia-pc66
** CPU: 4x Core i7 2.66 GHz
** RAM: 8 GB
** OS: Mac OS X Snow Leopard
** AtlasCreator Version: 0.21

* No. of Cases: 6
* Template Type: Dynamic
* Iterations: 2
* Toolkit: CMTK
* Registration Type: Affine
* Runtime: 28 minutes

* Log: [[File:03Log.txt]]
* MRML Scene: [[File:03cmtkDynamic.zip]]

<gallery>
Image:03Template.png|Dynamic Template
Image:03Atlas.png|Combined Atlas output
Image:atlas3.png|Atlas for label 3 output
Image:atlas4.png|Atlas for label 4 output
Image:atlas5.png|Atlas for label 5 output
Image:atlas6.png|Atlas for label 6 output
Image:atlas7.png|Atlas for label 7 output
Image:atlas8.png|Atlas for label 8 output
Image:atlas9.png|Atlas for label 9 output
Image:atlas10.png|Atlas for label 10 output
Image:atlas31.png|Atlas for label 31 output
Image:atlas32.png|Atlas for label 32 output
Image:03ExampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
</gallery>

=== 04: Dynamic with BRAINSFit on 6 Cases ===
* Machine: sbia-pc66
** CPU: 4x Core i7 2.66 GHz
** RAM: 8 GB
** OS: Mac OS X Snow Leopard
** AtlasCreator Version: 0.21

* No. of Cases: 6
* Template Type: Dynamic
* Iterations: 2
* Toolkit: BRAINSFit
* Registration Type: Affine
* Runtime: 64 minutes

* Log: [[File:04Log.txt]]
* MRML Scene: [[File:04brainsfitDynamic.zip]]

<gallery>
Image:04Template.png|Dynamic Template
Image:04Atlas.png|Combined Atlas output
Image:04Atlas3.png|Atlas for label 3 output
Image:04Atlas4.png|Atlas for label 4 output
Image:04Atlas5.png|Atlas for label 5 output
Image:04Atlas6.png|Atlas for label 6 output
Image:04Atlas7.png|Atlas for label 7 output
Image:04Atlas8.png|Atlas for label 8 output
Image:04Atlas9.png|Atlas for label 9 output
Image:04Atlas10.png|Atlas for label 10 output
Image:04Atlas31.png|Atlas for label 31 output
Image:04Atlas32.png|Atlas for label 32 output
Image:04ExampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
</gallery>


=== 05: Fixed with CMTK on 50 Cases ===
* Machine: b2-t74-3
** CPU: 4x Xeon 3 GHz
** RAM: 32 GB
** OS: Linux 64
** AtlasCreator Version: 0.21

* No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
* Template Type: Fixed
* Toolkit: CMTK
* Registration Type: Affine
* Runtime: 162 minutes

* Log: [[File:05CmtkFixed.txt]]
* MRML Scene: [[File:05cmtkFixed.zip]]

<gallery>
Image:05template.png|Fixed Template
Image:05atlas.png|Combined Atlas output
Image:05atlas3.png|Atlas for label 3 output
Image:05atlas4.png|Atlas for label 4 output
Image:05atlas5.png|Atlas for label 5 output
Image:05atlas6.png|Atlas for label 6 output
Image:05atlas7.png|Atlas for label 7 output
Image:05atlas8.png|Atlas for label 8 output
Image:05atlas9.png|Atlas for label 9 output
Image:05atlas10.png|Atlas for label 10 output
Image:05atlas31.png|Atlas for label 31 output
Image:05atlas32.png|Atlas for label 32 output
Image:05exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
</gallery>


=== 06: Fixed with BRAINSFit on 50 Cases ===
* Machine: b2-t74-3
** CPU: 4x Xeon 3 GHz
** RAM: 32 GB
** OS: Linux 64
** AtlasCreator Version: 0.21

* No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
* Template Type: Fixed
* Toolkit: BRAINSFit
* Registration Type: Affine
* Runtime: 241 minutes

* Log: [[File:06brainsfitFixed.txt]]
* MRML Scene: [[File:06brainsfitFixed.zip]]

<gallery>
Image:06template.png|Fixed Template
Image:06atlas.png|Combined Atlas output
Image:06atlas3.png|Atlas for label 3 output
Image:06atlas4.png|Atlas for label 4 output
Image:06atlas5.png|Atlas for label 5 output
Image:06atlas6.png|Atlas for label 6 output
Image:06atlas7.png|Atlas for label 7 output
Image:06atlas8.png|Atlas for label 8 output
Image:06atlas9.png|Atlas for label 9 output
Image:06atlas10.png|Atlas for label 10 output
Image:06atlas31.png|Atlas for label 31 output
Image:06atlas32.png|Atlas for label 32 output
Image:06exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
</gallery>


=== 07: Dynamic with BRAINSFit on 50 Cases ===
* Machine: b2-t74-3
** CPU: 4x Xeon 3 GHz
** RAM: 32 GB
** OS: Linux 64
** AtlasCreator Version: 0.21

* No. of Cases: 50
* Template Type: Dynamic
* Iterations: 5
* Toolkit: BRAINSFit
* Registration Type: Affine
* Runtime: 1244 minutes (< 24h)

* Log: [[File:07brainsfitDynamic.txt]]
* MRML Scene: [[File:07brainsfitDynamic.zip]]

<gallery>
Image:07template.png|Dynamic Template
Image:07atlas.png|Combined Atlas output
Image:07atlas3.png|Atlas for label 3 output
Image:07atlas4.png|Atlas for label 4 output
Image:07atlas5.png|Atlas for label 5 output
Image:07atlas6.png|Atlas for label 6 output
Image:07atlas7.png|Atlas for label 7 output
Image:07atlas8.png|Atlas for label 8 output
Image:07atlas9.png|Atlas for label 9 output
Image:07atlas10.png|Atlas for label 10 output
Image:07atlas31.png|Atlas for label 31 output
Image:07atlas32.png|Atlas for label 32 output
Image:07exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
</gallery>

=== 08: Dynamic with CMTK on 50 Cases ===
* Machine: b2-t74-1
** CPU: 4x Xeon 3 GHz
** RAM: 32 GB
** OS: Linux 64
** AtlasCreator Version: 0.21

* No. of Cases: 50
* Template Type: Dynamic
* Iterations: 5
* Toolkit: CMTK
* Registration Type: Affine
* Runtime: 3099 minutes (>48 h)

* Log: [[File:08cmtkDynamic.txt]]
* MRML Scene: [[File:08cmtkDynamic.zip]]

<gallery>
Image:08template.png|Dynamic Template
Image:08atlas.png|Combined Atlas output
Image:08atlas3.png|Atlas for label 3 output
Image:08atlas4.png|Atlas for label 4 output
Image:08atlas5.png|Atlas for label 5 output
Image:08atlas6.png|Atlas for label 6 output
Image:08atlas7.png|Atlas for label 7 output
Image:08atlas8.png|Atlas for label 8 output
Image:08atlas9.png|Atlas for label 9 output
Image:08atlas10.png|Atlas for label 10 output
Image:08atlas31.png|Atlas for label 31 output
Image:08atlas32.png|Atlas for label 32 output
Image:08exampleBeforeAndAfter.png|Checkerboard: Before-Template and After-Template
</gallery>