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	<id>https://www.na-mic.org/w/index.php?action=history&amp;feed=atom&amp;title=2006_September_Slicer_3_Meeting_Notes</id>
	<title>2006 September Slicer 3 Meeting Notes - Revision history</title>
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	<updated>2026-04-16T20:47:54Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
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		<id>https://www.na-mic.org/w/index.php?title=2006_September_Slicer_3_Meeting_Notes&amp;diff=4159&amp;oldid=prev</id>
		<title>Andy: Update from Wiki</title>
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		<updated>2006-12-18T13:37:04Z</updated>

		<summary type="html">&lt;p&gt;Update from Wiki&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;Action items: (see also Status page for SPL Slicer3 TODO items).&lt;br /&gt;
&lt;br /&gt;
# Give error message when incrTcl isn't found (Steve)&lt;br /&gt;
# Check to make sure that itk is not being run in debug mode (Steve)&lt;br /&gt;
# Ron/Tina to set up meeting at MICCAI to check with core 1 re. rep from each group for Slicer 3 applications&lt;br /&gt;
# Consider alternate/physical coordinate systems (Mike Halle, Doug Allen, Alex Y)&lt;br /&gt;
## Mike and Doug will propose patches to accomodate their scales/coord systems&lt;br /&gt;
# set the background in 3d and 2d windows to be transparent? (Context: when you load a dataset like the visible human that is not square) (Bill, Steve)&lt;br /&gt;
# Visualization - fg/bg vs. layers? Evaluate what needs to be done to go to layers (Mike Halle, Wendy)&lt;br /&gt;
# Automatic discovery of type of data being loaded (vol, surfaces, xform...) (Bill, Jim, Steve)&lt;br /&gt;
# Control-F search of modules list (Yumin, Jim, Steve)&lt;br /&gt;
# Fiducials - move &amp;quot;select&amp;quot; column to left in the fiducial list (Nicole)&lt;br /&gt;
# Use style rather than color labels (Nicole, Mike)&lt;br /&gt;
## Basic Colors for November&lt;br /&gt;
## More extensive color mapping after January&lt;br /&gt;
# Rasterizing 2d polygons (Steve, Bill)&lt;br /&gt;
# Subject helper/delete changes (Will)&lt;br /&gt;
# Give Will pointer to volume rendering code in Slicer 2.x (Steve)&lt;br /&gt;
# Add volume rendering to deferred-post-Jan list. IGT be the driver for it. (Steve, Noby)&lt;br /&gt;
# Off-screen rendering functionality to be added to defferd-post-Jan list(Will)&lt;br /&gt;
# Extend Archetype file reading to handle color, vector etc. (Bill)&lt;br /&gt;
# Pull MGH data reading facility (from Gheorge's checked in code in the NA-MIC sandbox) in Slicer 3 for October(Nicole)&lt;br /&gt;
# Faster DICOM loading should be treated as high priority item - gdcm memory maps? (Matthieu, Jim)&lt;br /&gt;
# Launcher Code (Andy)&lt;br /&gt;
## Control-C on the Slicer3 should kill Slicer3-real&lt;br /&gt;
## Shell scripts to set up environment&lt;br /&gt;
## --executable flag to Slicer3 (launcher)&lt;br /&gt;
# Cpack output with architecture and build date included in installer name&lt;br /&gt;
# Introspection on Observers (Will)&lt;br /&gt;
# Put these notes in bug tracker (Tina)&lt;br /&gt;
# vtkDebugMacro and vtkErrorMacro and itk things should get logged to a KWWidget that replaces the vtkOutputWindow and itkOutputWindow (Yumin)&lt;br /&gt;
## Be able to save contents to file&lt;br /&gt;
# New file browsers (Yumin, Sebastien)&lt;br /&gt;
# Command line module enhancement (Jim - see status page)&lt;br /&gt;
# Registration Algorithm command line modules - Bill&lt;br /&gt;
## Skull stripper? See paper by Notestien et al from mBIRN&lt;br /&gt;
&lt;br /&gt;
[https://portal.nbirn.net/Apps/get.cgi/home/Web/Publications/Presentations/2005/Fennema_Notestine_etal_HBM_ACCEPTED.pdf#search=%22christine%20notestine%20skull%20stripping%20birn%22 [1]]&lt;br /&gt;
&lt;br /&gt;
# ## Kilian: can joint seg/reg code be used as skull stripper as input to bpline registration&lt;br /&gt;
## Core 1 Challenge (Bill)&lt;br /&gt;
# Integrate OpenTracker (SPLOT) with MRML (Liu, Hata)&lt;br /&gt;
&lt;br /&gt;
[[2006_September_Slicer3_Update|Back to Meeting Page]]&lt;/div&gt;</summary>
		<author><name>Andy</name></author>
		
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