2008 Summer Project Week:PopulationDTIApplication - Revision history

Gcasey at 14:42, 26 June 2008

2008-06-26T14:42:25Z

Gcasey at 14:41, 26 June 2008

2008-06-26T14:41:55Z

Gcasey at 14:20, 26 June 2008

2008-06-26T14:20:11Z

Gcasey: Merged b-spline project

2008-06-26T13:41:55Z

Merged b-spline project

Gcasey at 20:03, 17 June 2008

2008-06-17T20:03:55Z

Gcasey: New page: {| |Project Week Main Page ]] |valign="top"|[[Image:gcasey-atlas-cingulum.png |thumb|320px|Population tensor...

2008-06-17T20:02:21Z

New page: {| |thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page ]] |valign="top"|[[Image:gcasey-atlas-cingulum.png |thumb|320px|Population tensor...

New page

{|
|[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]]
|valign="top"|[[Image:gcasey-atlas-cingulum.png |thumb|320px|Population tensor atlas with Cingulum bundle tract]]
|}

__NOTOC__
===Key Investigators===
* Utah: Casey Goodlett
* BWH: Marek Kubicki

<div style="margin: 20px;">

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Objective</h1>
Develop a plan with DBPs on applying DTI atlas methodology to a clinical study.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Approach, Plan </h1>

Initial results will be generated before the project week on building DTI atlases using clinical Schizophrenia data. During the project week more specific plans for statistical analysis of fiber bundles across a population will be developed.

</div>

<div style="width: 40%; float: left;">

<h1>Progress</h1>

====June 2008 Project Week====
* Initial atlas built for data
* Obtained group information
* Group analysis currently underway

</div>

<br style="clear: both;" />

</div>

===References===
[[Projects:DTIPopulationAnalysis]]

@@ Line 2: / Line 2: @@
 |[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]]
 |valign="top"|[[Image:miratlas-cing-snap.png |thumb|320px|Population tensor atlas with Cingulum bundle tract using b-spline registration]]
-|valign="top"|[[Image:Gcasey-atlas-slices.png |thumb|400px|Slices from atlases built with only affine registration, fluid registration, and b-spline registration]]
+|valign="top"|[[Image:Gcasey-atlas-slices.png |thumb|480px|Slices from atlases built with only affine registration, fluid registration, and b-spline registration]]
 |}

@@ Line 2: / Line 2: @@
 |[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]]
 |valign="top"|[[Image:miratlas-cing-snap.png |thumb|320px|Population tensor atlas with Cingulum bundle tract using b-spline registration]]
 |}

@@ Line 7: / Line 7: @@
 ===Key Investigators===
 * Utah: Casey Goodlett, Guido Gerig
 * BWH: Marek Kubicki, Sylvain Bouix
 <div style="margin: 20px;">
@@ Line 14: / Line 16: @@
 <h1>Objective</h1>
-Develop a plan with DBPs on applying DTI atlas methodology to a clinical study.
+We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison. In order to use fiber tracts in population studies, spatial normalization of the population is required. We have developed a framework around a non-open source groupwise registration tools. We would like to integrate an open source tool to provide a complete framework for statistical analysis.
 </div>
@@ Line 23: / Line 25: @@
 Initial results will be generated before the project week on building DTI atlases using clinical Schizophrenia data.  During the project week more specific plans for statistical analysis of fiber bundles across a population will be developed.
 </div>
@@ Line 31: / Line 37: @@
 ====June 2008 Project Week====
-* Initial atlas built for data
+* Initial atlas built for data and provided to Sylvain Bouix
-* Obtained group information
+* B-spline registration run on PNL data
-* Group analysis currently underway
+* TODO: develop script to run procedure now that complete open source tools are available
 </div>
@@ Line 42: / Line 48: @@
 ===References===
-[[Projects:DTIPopulationAnalysis]]
+* [[Projects:DTIPopulationAnalysis]]