2008 Winter Project Week:Cortical Thickness - Revision history

Cvachet at 19:49, 7 February 2008

2008-02-07T19:49:04Z

Cvachet at 19:45, 7 February 2008

2008-02-07T19:45:25Z

Cvachet at 19:37, 7 February 2008

2008-02-07T19:37:02Z

Cvachet at 21:21, 10 January 2008

2008-01-10T21:21:07Z

Cvachet at 02:53, 7 January 2008

2008-01-07T02:53:56Z

Cvachet at 03:33, 13 December 2007

2007-12-13T03:33:44Z

Cvachet at 03:11, 13 December 2007

2007-12-13T03:11:44Z

Cvachet at 03:10, 13 December 2007

2007-12-13T03:10:29Z

Cvachet: New page: {| |Return to [[2008_Winter_Project_Week ]] |} NOTOC ===Key Investigators=== * UNC: Heather Cody Hazlett, Martin Styner, Clement Vachet * GE: Jim M...

2007-12-13T03:09:56Z

New page: {| |thumb|320px|Return to [[2008_Winter_Project_Week ]] |} __NOTOC__ ===Key Investigators=== * UNC: Heather Cody Hazlett, Martin Styner, Clement Vachet * GE: Jim M...

New page

{|
|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]
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__NOTOC__
===Key Investigators===
* UNC: Heather Cody Hazlett, Martin Styner, Clement Vachet
* GE: Jim Miller

<div style="margin: 20px;">

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Objective</h1>

We would like to create an end-to-end application within Slicer3 allowing individual and group analysis of regional and local cortical thickness.
Such a workflow applied to the young brain (2-4 years old) is our goal in order to start a longitudinal study of early brain development in [[DBP2:UNC|autism]]
See our [[DBP2:UNC:Cortical_Thickness_Roadmap| Roadmap]] for more details.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Approach, Plan </h1>
Our approach during this week is to be able to use several Slicer3 modules, in order to process our data.
We would like to apply EMSegment to our data and compare it whith a segmentation tool developped in our lab.
We would like to be able to use the B-spline registration module to be able to use it for our data (atlas to data registration, applying the related transformation to ROIs)
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<div style="width: 40%; float: left;">

<h1>Progress</h1>

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<br style="clear: both;" />

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@@ Line 44: / Line 44: @@
 EMSegment was run successfully on our own data (T1-weigthed and T2-weighted) using our pediatric atlas.
-We have started a reliability study comparing EMSegment and itkEMS, unsing ten scans of the same patient.
+We have started a reliability study comparing EMSegment and itkEMS, using ten scans of the same patient.
 <br style="clear: both;" />

@@ Line 34: / Line 34: @@
 <h1>Progress</h1>
 Attended:
 * EMSegment breakout session
@@ Line 43: / Line 40: @@
 We have learnt how to use the new EMSegment module.
-We have successfully run the module using the tutorial template-data.
+EMSegment was run successfully on the tutorial template-data.
-We need to run it using our own pediatric atlas-data.
+We have started a reliability study comparing EMSegment and itkEMS, unsing ten scans of the same patient.
-</div>
+<br style="clear: both;" />

@@ Line 27: / Line 27: @@
 Our plan during this week is to use several Slicer3 modules, and apply them on our pediatric data.
 We would like to apply EMSegment to segment our pediatric data using our own atlas and compare it whith a segmentation tool (itkEMS) developped in our lab.
 </div>

← Older revision		Revision as of 21:21, 10 January 2008
Line 39:		Line 39:

	<br style="clear: both;" />		<br style="clear: both;" />
		+	Attended:
		+	* EMSegment breakout session
		+	* Registration breakout session
		+
		+	We have learnt how to use the new EMSegment module.
		+
		+	We have successfully run the module using the tutorial template-data.
		+
		+	We need to run it using our own pediatric atlas-data.

	</div>		</div>

@@ Line 25: / Line 25: @@
 <h1>Approach, Plan </h1>
-Our approach during this week is to be able to use several Slicer3 modules, in order to process our data.
+Our plan during this week is to use several Slicer3 modules, and apply them on our pediatric data.
-We would like to apply EMSegment to our data and compare it whith a segmentation tool developped in our lab.
+We would like to apply EMSegment to segment our pediatric data using our own atlas and compare it whith a segmentation tool (itkEMS) developped in our lab.
-We would also like to use the B-spline registration module and apply it to our data (atlas to data registration, use of the related transformation)
+We would also like to use the new B-spline registration module and apply it to our pediatric data (atlas to data registration with the use of the related transformation)
 </div>

@@ Line 15: / Line 15: @@
 We would like to create an end-to-end application within Slicer3 allowing individual and group analysis of regional and local cortical thickness.
 Such a workflow applied to the young brain (2-4 years old) is our goal in order to start a longitudinal study of early brain development in [[DBP2:UNC|autism]]
 See our [[DBP2:UNC:Cortical_Thickness_Roadmap| Roadmap]] for more details.