2008 Winter Project Week:Fluid Mechanics Tractography - Revision history

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 ** Finished analysis of MIND data set, M87101083_visit1, and uploaded results to database
 ** Continuing analysis of other MIND data sets for cross-method validation
-** Continuing work on digital DTI phantom creation and application of method to it.
+** Continuing work on digital DTI phantom creation and application of method to it.  For more details on the helix phantom, see our separate [[Hageman:NAMICHelixPhantom|project page]].
 ====June 2007 Project Week====

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 * Integration of method into Slicer 3
 ** Finished initial coding of method in itk
-** Working on multi-threaded support
+** Continuing work on the following features:
 * Analysis of tractography group test data set
-** Finished analysis of primary MIND data set
+** Finished analysis of MIND data set, M87101083_visit1, and uploaded results to database
-** Working on analysis of other MIND data sets
+** Continuing analysis of other MIND data sets for cross-method validation
 ====June 2007 Project Week====

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 ====January 2008 Project Week====
 * Integration of method into Slicer 3
-** Finished coding method in itk
+** Finished initial coding of method in itk
 ** Working on multi-threaded support
-* Analysis of tractography test data set
+* Analysis of tractography group test data set
 ** Finished analysis of primary MIND data set
 ** Working on analysis of other MIND data sets

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 <h1>Objective</h1>
 Computational fluid dynamics is a rich field and its application to the analysis of diffusion tensor imaging (DTI) datasets has yielded possible applications to tractography, image registration, and white matter pathology.  We are developing several useful and novel diffusion tensor imaging (DTI) analysis algorithms modeled on the principles of fluid mechanics for inclusion within the NA-MIC framework.  The goal of this project is to develop these methods, make them compatible with the NA-MIC ITK-based software infrastructure (i.e. Slicer), and promote their dissemination to the scientific community.
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 ====January 2008 Project Week====
-* Progress in the conversion of method into Slicer 3
+* Integration of method into Slicer 3
-* Continued analysis of tractography test data set
+** Finished coding method in itk
 ====June 2007 Project Week====

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 ===References===
-* NS Hageman, DW Shattuck, K Narr, AW Toga.  A Diffusion tensor imaging tractography method based on Navier-Stokes Fluid Mechanics. In Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging, 2006.
+* Hageman NS, Shattuck DW, Narr K, Toga AW (2006).  A diffusion tensor imaging tractography method based on Navier-Stokes fluid mechanics. Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2006), Arlington, VA, USA, 6-9 April 2006. p. 798-801.
-* NS Hageman, AW Toga, K Narr, DW Shattuck.  A Diffusion Tensor Imaging Tractography Algorithm Based on Navier-Stokes Fluid Mechanics. IEEE Transactions in Medicial Imaging, In Submission.
+* Hageman NS, Toga AW, Narr K, Shattuck DW (2008).  A diffusion tensor imaging tractography algorithm based on Navier-Stokes fluid mechanics. IEEE Trans. in Medicial Imaging, In Submission.
-* L Hamilton, K Nuechterlein, NS Hageman, R Woods, R Asarnow, J Alger, C Gaser, AW Toga, K Narr.  Mean Diffusivity and Fractional Anisotropy as Indicators of Schizophrenia and Genetic Vulnerability, Human Brain Mapping, In Submission.
+* Hamilton L, Nuechterlein K, Hageman NS, Woods R, Asarnow R, Alger J, Gaser C, Toga AW, Narr K (2008).  Mean Diffusivity and Fractional Anisotropy as Indicators of Schizophrenia and Genetic Vulnerability, Neuroimage, In Submission.

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-<h1>Approach, Plan </h1>
+<h1>Approach / Plan </h1>
-The details of our method is given in the paper listed in the reference section.  Our approach will focus on working with NA-MIC members and collaborators to successfully reimplement our method in a NA-MIC ITK compatible form.  Our plan for the project week is to introduce the basics of our method to the NA-MIC community and make progress in converting our code to a compatible form.
+We have developed and initially validated a DTI tractography method based on Navier-Stokes fluid mechanics.  See the papers listed in the reference section for complete details on the method.  Our approach for this project week will focus on the following:
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