2008 Winter Project Week GroupwiseReg - Revision history

Serdar at 15:17, 11 January 2008

2008-01-11T15:17:55Z

Serdar: /* References */

2008-01-11T15:11:56Z

References

Serdar: /* Jan 2008 Project Week */

2008-01-11T15:11:31Z

Jan 2008 Project Week

Serdar: /* Jan 2008 Project Week */

2008-01-11T15:11:06Z

Jan 2008 Project Week

Serdar at 15:04, 11 January 2008

2008-01-11T15:04:40Z

Serdar: /* Key Investigators */

2008-01-11T15:03:41Z

Key Investigators

Serdar at 15:03, 11 January 2008

2008-01-11T15:03:00Z

Davisb: /* Lead Up Work */

2008-01-07T14:17:37Z

Lead Up Work

Davisb: /* Lead Up Work */

2007-12-13T19:06:47Z

Lead Up Work

Davisb: /* Lead Up Work */

2007-12-13T19:06:37Z

Lead Up Work

@@ Line 10: / Line 10: @@
 ===Key Investigators===
 * MIT: Serdar Balci, Polina Golland
-* Kitware: Luis Ibanez
+* Kitware: Brad Davis
+* SCI: Casey Goodlett
 <div style="margin: 20px;">
@@ Line 19: / Line 19: @@
 <h1>Objective</h1>
-The goal of this project is to develop an efficient B-Splines based registration code.
+The goal of this project is to expand the NAMIC Software Kit with the addition of an image-based atlas
-We explore the space of different optimization schemes e.g. caching, sparsity and memory-speed trade-off's.
+building algorithm that was developed by Polina Golland’s lab at MIT. The basic functionality of this software will
 </div>
@@ Line 28: / Line 34: @@
 <h1>Approach, Plan </h1>
-We run benchmark experiments in the special case of itkMattesMutualInformation implementation.
+The registration algorithms are already available as C++ sourcecode.  We plan to integrate them into the NAMIC community by:
-The drawback of caching is the use of high amounts of memory.
+*Adapt sourcecode to utilize the command-line parsing mechanism that was designed for Slicer3 external modules.
-We compare the performance of caching vs. not-caching(computing the coefficients on the fly)
+*Create a simple Slicer3 graphical user interface (external module) that allows a user to generate an atlas from their data.
-by deactivating caching code in itkMattesMutualInformation .
+*User Feedback. During the January 2008 NAMIC all-hands meeting we will solicit feedback on this project from potential collaborators.
 </div>
@@ Line 46: / Line 49: @@
 ====Jan 2008 Project Week====
-We run an experiment on a machine
+<br style="clear: both;" />
 </div>
-</div>
+===References===

← Older revision		Revision as of 15:11, 11 January 2008
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	</div>		</div>
−
−	~~===References===~~
−	* S.K. Balci, P. Golland, M.E. Shenton, W.M. Wells III. Free-Form B-spline Deformation Model for Groupwise Registration. In Proceedings of MICCAI 2007 Statistical Registration Workshop: Pair-wise and Group-wise Alignment and Atlas Formation, 23-30, 2007.

@@ Line 46: / Line 46: @@
 ====Jan 2008 Project Week====
 We run an experiment on a machine
@@ Line 66: / Line 63: @@
 registration time.
 </div>

@@ Line 49: / Line 49: @@
 <br style="clear: both;" />
 </div>
 ===References===
 * S.K. Balci, P. Golland, M.E. Shenton, W.M. Wells III. Free-Form B-spline Deformation Model for Groupwise Registration. In Proceedings of MICCAI 2007 Statistical Registration Workshop: Pair-wise and Group-wise Alignment and Atlas Formation, 23-30, 2007.

@@ Line 19: / Line 19: @@
 <h1>Objective</h1>
-The goal of this project is to come up with an efficient registration code using B-Splines as a deformation model.
+The goal of this project is to develop an efficient B-Splines based registration code.
 We explore the space of different optimization schemes e.g. caching, sparsity and memory-speed trade-off's.

← Older revision		Revision as of 14:17, 7 January 2008
Line 46:		Line 46:
	<h1>Progress</h1>		<h1>Progress</h1>

−	~~====Lead Up Work====~~
−
−	~~Command Line Interface: Started~~
−
−	~~External Module: Not Started~~

	====Jan 2008 Project Week====		====Jan 2008 Project Week====

← Older revision		Revision as of 19:06, 13 December 2007
Line 49:		Line 49:

	Command Line Interface: Started		Command Line Interface: Started
		+
	External Module: Not Started		External Module: Not Started

← Older revision		Revision as of 19:06, 13 December 2007
Line 48:		Line 48:
	====Lead Up Work====		====Lead Up Work====

		+	Command Line Interface: Started
		+	External Module: Not Started

	====Jan 2008 Project Week====		====Jan 2008 Project Week====