2008 Winter Project Week VolumeRenderingUsingCuda - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:44:49Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Melonakos at 19:06, 6 November 2008

2008-11-06T19:06:49Z

Bensch at 20:15, 7 January 2008

2008-01-07T20:15:41Z

Bensch: /* June 2007 Project Week */

2007-12-17T22:10:23Z

June 2007 Project Week

Bensch at 22:09, 17 December 2007

2007-12-17T22:09:21Z

Bensch at 22:09, 17 December 2007

2007-12-17T22:09:04Z

Bensch: /* References */

2007-12-17T22:07:08Z

References

Bensch: New page: {| |Return to [[2008_Winter_Project_Week ]] |valign="top"|Volume Rendering with CUDA |} NOTOC ===Key...

2007-12-17T22:06:49Z

New page: {| |thumb|320px|Return to [[2008_Winter_Project_Week ]] |valign="top"|thumb|320px|Volume Rendering with CUDA |} __NOTOC__ ===Key...

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{|
|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]
|valign="top"|[[Image:VolumeRenderingCuda.png |thumb|320px|Volume Rendering with CUDA]]
|}

__NOTOC__
===Key Investigators===
* BWH: Nobuhiko Hata, Benjamin Grauer
* Nicholas Herlambang
* Nagoya University: Kensaku Mori

<div style="margin: 20px;">

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Objective</h1>
We are creating a new Volume Rendering Module based Slicer3 to render 4D High Resolution Datasets using hardware accelerated with CUDA by NVidia.

The Objectives of this project is to use modern hardware acceleration for registration and navigation during a running surgery.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Approach, Plan </h1>
Our approach is described by the references below. Our challenge is to build the ITK infrastructure (such as new ITK iterators) to support this algorithm. Our main purpose at the Project Week is to collaborate on new algorithms and clinical data to provide the best solutions for our DBP partners.
</div>

<div style="width: 40%; float: left;">

<h1>Progress</h1>

====June 2007 Project Week====
During this Project Week, we did a lot of algorithmic design work, focusing on leveraging optimal or geodesic path information to provide for volumetric segmentations of fiber bundles. Working with Marek Kubicki and the Harvard DBP, we were able to begin the process of applying our algorithm to the full cingulum bundle with new labelmaps and to a new fiber bundle - Arcuate. We have recently achieved significant results in volumetric segmentations using a locally-constrained region-based technique (see the images above).

====Jan 2007 Project Half Week====
We finished the itkDirectionalIterator which will be needed in the Fast Sweeping implementation. Furthermore, we made progress in porting our Matlab code to ITK.

</div>

<br style="clear: both;" />

</div>

===References===
* J. Melonakos, M. Niethammer, V. Mohan, M. Kubicki, J. Miller, A. Tannenbaum. Locally-Constrained Region-Based Methods for DW-MRI Segmentation. Submitted to MMBIA 2007.
* V. Mohan, J. Melonakos, M. Niethammer, M. Kubicki, and A. Tannenbaum. Finsler Level Set Segmentation for Imagery in Oriented Domains. BMVC 2007.
* J. Melonakos, V. Mohan, M. Niethammer, K. Smith, M. Kubicki, and A. Tannenbaum. Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle. MICCAI 2007.
* J. Melonakos, E. Pichon, S. Angenet, and A. Tannenbaum. Finsler Active Contours. IEEE Transactions on Pattern Analysis and Machine Intelligence, to appear in 2007.
* E. Pichon and A. Tannenbaum. Curve segmentation using directional information, relation to pattern detection. In IEEE International Conference on Image Processing (ICIP), volume 2, pages 794-797, 2005.
* E. Pichon, C-F Westin, and A. Tannenbaum. A Hamilton-Jacobi-Bellman approach to high angular resolution diffusion tractography. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pages 180-187, 2005.

@@ Line 24: / Line 24: @@
 <h1>Approach, Plan </h1>
-Our approach is to integrate a [http://www.slicer.org/slicerWiki/index.php/Slicer3:Volume_Rendering_With_Cuda Volume Rendering With Cuda] Hardware into VTK and Slicer3. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
+Our approach is to integrate a [https://www.slicer.org/wiki/Slicer3:Volume_Rendering_With_Cuda Volume Rendering With Cuda] Hardware into VTK and Slicer3. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
 </div>

@@ Line 24: / Line 24: @@
 <h1>Approach, Plan </h1>
-Our approach is to integrate a [[Volume Rendering With Cuda]] Hardware into VTK and Slicer3. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
+Our approach is to integrate a [http://www.slicer.org/slicerWiki/index.php/Slicer3:Volume_Rendering_With_Cuda Volume Rendering With Cuda] Hardware into VTK and Slicer3. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
 </div>

@@ Line 24: / Line 24: @@
 <h1>Approach, Plan </h1>
-Our approach is currently using a Surface rendering and a Maximum Intensity Projection to render on the CUDA Hardware. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
+Our approach is to integrate a [[Volume Rendering With Cuda]] Hardware into VTK and Slicer3. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
 </div>

@@ Line 24: / Line 24: @@
 <h1>Approach, Plan </h1>
-Our approach is currently using a Surface rendering and a Maximum Intensity Projection to render on the CUDA Hardware. The current source is located at http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda.
+Our approach is currently using a Surface rendering and a Maximum Intensity Projection to render on the CUDA Hardware. The current source is located at [http://www.na-mic.org/svn/Slicer3/branches/cuda/Modules/VolumeRenderingCuda here].
 </div>

← Older revision		Revision as of 22:07, 17 December 2007
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	===References===		===References===
−	* ~~J. Melonakos, M. Niethammer, V. Mohan, M. Kubicki, J. Miller, A. Tannenbaum. Locally-Constrained Region-Based Methods for DW-MRI Segmentation. Submitted~~ to ~~MMBIA 2007.~~	+	* to be entered here
−	* V. Mohan, J. Melonakos, M. Niethammer, M. Kubicki, and A. Tannenbaum. Finsler Level Set Segmentation for Imagery in Oriented Domains. BMVC 2007.
−	* J. Melonakos, V. Mohan, M. Niethammer, K. Smith, M. Kubicki, and A. Tannenbaum. Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle. MICCAI 2007.
−	* J. Melonakos, E. Pichon, S. Angenet, and A. Tannenbaum. Finsler Active Contours. IEEE Transactions on Pattern Analysis and Machine Intelligence, to appear in 2007.
−	* E. Pichon and A. Tannenbaum. Curve segmentation using directional information, relation to pattern detection. In IEEE International Conference on Image Processing (ICIP), volume 2, pages 794-797, 2005.
−	* E. Pichon, C-F Westin, and A. Tannenbaum. A Hamilton-Jacobi-Bellman approach to high angular resolution diffusion tractography. In International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), pages 180-187, 2005.

@@ Line 31: / Line 31: @@
 <h1>Progress</h1>
-====June 2007 Project Week====
+====December 2007====
-During this Project Week, we did a lot of algorithmic design work, focusing on leveraging optimal or geodesic path information to provide for volumetric segmentations of fiber bundles.  Working with Marek Kubicki and the Harvard DBP, we were able to begin the process of applying our algorithm to the full cingulum bundle with new labelmaps and to a new fiber bundle - Arcuate.  We have recently achieved significant results in volumetric segmentations using a locally-constrained region-based technique (see the images above).
+Basic Integration of CUDA into the Slicer3 Framework.
 </div>

2008 Winter Project Week VolumeRenderingUsingCuda - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Melonakos at 19:06, 6 November 2008

Bensch at 20:15, 7 January 2008

Bensch: /* June 2007 Project Week */

Bensch at 22:09, 17 December 2007

Bensch at 22:09, 17 December 2007

Bensch: /* References */

Bensch: New page: {| |Return to [[2008_Winter_Project_Week ]] |valign="top"|Volume Rendering with CUDA |} __NOTOC__ ===Key...

Bensch: New page: {| |Return to [[2008_Winter_Project_Week ]] |valign="top"|Volume Rendering with CUDA |} NOTOC ===Key...