2009ProstateChallengeTrainingData - Revision history

Noby at 13:30, 15 May 2009

2009-05-15T13:30:30Z

Noby at 13:27, 15 May 2009

2009-05-15T13:27:14Z

Sota at 21:31, 11 May 2009

2009-05-11T21:31:36Z

Sota at 21:30, 11 May 2009

2009-05-11T21:30:43Z

Sota at 21:27, 11 May 2009

2009-05-11T21:27:12Z

Sota at 21:26, 11 May 2009

2009-05-11T21:26:39Z

Sota at 21:25, 11 May 2009

2009-05-11T21:25:18Z

Noby: **

2009-05-11T17:48:25Z

Noby at 17:44, 11 May 2009

2009-05-11T17:44:39Z

Noby at 17:43, 11 May 2009

2009-05-11T17:43:21Z

← Older revision		Revision as of 13:30, 15 May 2009
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	**All the image data was in anonymized NRRD format, which can be read and written by open-source software, 3D Slicer (http://www.slicer.org/). The NRRD format contains all the necessary relevant geometry information to open correctly the volume data: dimensions, coding type, voxel spacing. The imaging data was provided without any pre-processing after reconstruction, as it is typically presented to physicians for analysis.		**All the image data was in anonymized NRRD format, which can be read and written by open-source software, 3D Slicer (http://www.slicer.org/). The NRRD format contains all the necessary relevant geometry information to open correctly the volume data: dimensions, coding type, voxel spacing. The imaging data was provided without any pre-processing after reconstruction, as it is typically presented to physicians for analysis.

		+	**In addition to the abovementioned 15 data, we provide case #16 with not segmentation. MR was taken in the same as the other 15 data.
	[[File:MICCAI2009ProstateChallengeBWH.zip \|Zipped Data]]		[[File:MICCAI2009ProstateChallengeBWH.zip \|Zipped Data]]

@@ Line 1: / Line 1: @@
-*Description of subjects
+*Challenge data
-#Enrollment
+**We have collected 15 prostate MR datasets with expert contours. T2 weighted Fast Spin Echo （FSE） MR axial images were obtained with a 1.5T GE Signa EXITE MR scanner from case1 to case15 using endo-rectal coil (TR/TE=5200/103, thickness=3-3.5mm, gap=0mm, FOV=120mm×120mm, matrix= 256×256). These datasets included 15 men (mean age 63.3 years; range between 47 to 72 years) who were randomly selected from cases of prostate carcinoma performed at our institution between May 2001 and August 2008.
-**case#Scene.mrml : scene data
+*In these MR images, contours were drawn by an experienced radiologist in all slices at total gland (TG) and central gland (CG) under the supervision of another senior radiologist. In the volume, the region of TG is labeled with 2 values, the region of CG is labeled with 1 values and the background is labeled with 0 values.
-**case#.nrrd : T2WI
-**TG.nrrd : segmentation data of total gland of prostate
+**All the image data was in anonymized NRRD format, which can be read and written by open-source software, 3D Slicer (http://www.slicer.org/). The NRRD format contains all the necessary relevant geometry information to open correctly the volume data: dimensions, coding type, voxel spacing. The imaging data was provided without any pre-processing after reconstruction, as it is typically presented to physicians for analysis.
 [[File:MICCAI2009ProstateChallengeBWH.zip |Zipped Data]]

@@ Line 3: / Line 3: @@
 #N=6 (1.5T:3, 3T:3)
 *How files are organized, Contents of each patient data
 **case#.nrrd : T2WI
 **TG.nrrd : segmentation data of total gland of prostate
 **CG.nrrd : segmentation data of central gland of prostate
 *Imaging Protocol for original MRI
 *NRRD format possible link to NRRD

@@ Line 4: / Line 4: @@
 *How files are organized, Contents of each patient data
 **case#.nrrd : T2WI
-**TG.nrrd : total gland
+**TG.nrrd : segmentation data of total gland of prostate
-**CG.nrrd : central gland
+**CG.nrrd : segmentation data of central gland of prostate
 **case#Scene.mrml : scene data
 *Imaging Protocol for original MRI
 *NRRD format possible link to NRRD

@@ Line 9: / Line 9: @@
 *Imaging Protocol for original MRI
 *NRRD format possible link to NRRD
-*Who segmented the data : sota oguro
+*Sota Oguro MD segmented the data
 [[File:MICCAI2009ProstateChallengeBWH.zip |Zipped Data]]

← Older revision		Revision as of 17:48, 11 May 2009
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−	#[[File:MICCAI2009ProstateChallengeBWH.zip \|Zipped Data]]	+	*Description of subjects
		+	#Enrollment
		+	#N=10
		+	*How files are organized, Contents of each patient data
		+	**TG
		+	**CG,
		+	*I,
		+	**SlicerScene1.xml
		+	*Imaging Protocol for original MRI
		+	*NRRD format possible link to NRRD
		+	*Who segmented the data
		+
		+	[[File:MICCAI2009ProstateChallengeBWH.zip \|Zipped Data]]

← Older revision		Revision as of 17:44, 11 May 2009
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−	#[[File:MICCAI2009ProstateChallengeBWH.zip]]	+	#[[File:MICCAI2009ProstateChallengeBWH.zip \|Zipped Data]]

← Older revision		Revision as of 17:43, 11 May 2009
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−	#[]File:MICCAI2009ProstateChallengeBWH.zip]]	+	#[[File:MICCAI2009ProstateChallengeBWH.zip]]