2009 Winter Project Week:LocalCorticalThicknessPipeline - Revision history

Cvachet: /* Key Investigators */

2009-01-09T17:02:57Z

Key Investigators

Cvachet at 21:56, 12 December 2008

2008-12-12T21:56:19Z

Cvachet at 21:53, 12 December 2008

2008-12-12T21:53:59Z

Cvachet: New page: {| |Project Week Main Page ]] |} NOTOC ===Key Investigators=== * UNC: Clement Vachet, Martin Styner, Heathe...

2008-12-12T21:33:06Z

New page: {| |thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page ]] |} __NOTOC__ ===Key Investigators=== * UNC: Clement Vachet, Martin Styner, Heathe...

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|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
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===Key Investigators===
* UNC: Clement Vachet, Martin Styner, Heather Cody Hazlett, Marc Niethammer
* GE: Jim Miller

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<h1>Objective</h1>
We are developing an end-to-end application within Slicer3 allowing individual and group analysis of local cortical thickness.

Such a workflow applied to the young brain (2-4 years old) is our goal in order to start a longitudinal study of early brain development in [[DBP2:UNC|autism (UNC DBP)]].

See our [[DBP2:UNC:Cortical_Thickness_Roadmap| Roadmap]] for more details.
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<h1>Approach, Plan</h1>

Our plan for the project week is to finish the pipeline and perform the analysis on a small dataset.
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<h1>Progress</h1>

Software for the registration between electrophysiology Carto data and the MR angiogram has been implemented, using the ITK/VTK platform (see ISMRM 2008 abstract, Taclas et al, and figure above). This week we wrote code to quantitatively determine the distances between each ablation location, and the closest region of scar, and to determine the distances between each pixel of scar, and the nearest ablation point. Therefore we accomplished our goal!

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===References===

← Older revision		Revision as of 17:02, 9 January 2009
Line 42:		Line 42:
	<h1>Progress</h1>		<h1>Progress</h1>

		+	The local cortical thickness pipeline has been slightly modified to include WMMap fixing
		+	*The mesh inflation step has been updated to detect vertices that have a high curvature (extremities)
		+	*A new module has been developped to correct the WMMap image
		+	*Pipeline loops until the fixing is no longer necessary
		+
		+
		+	Meetings (with Martin, Dan Marcus, Wendy Plesniak) and concerning future integration of the tool within Slicer3: use of XNAT for group analysis.

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@@ Line 10: / Line 10: @@
 ===Key Investigators===
-* UNC: Clement Vachet, Martin Styner, Heather Cody Hazlett, Marc Niethammer
+* UNC: Clement Vachet, Martin Styner, Heather Cody Hazlett, Marc Niethammer, Ipek Oguz
 * GE: Jim Miller
@@ Line 30: / Line 30: @@
 <h1>Approach, Plan</h1>
-Our plan for the project week is to finish the pipeline and perform the analysis on a small dataset.
+Our plan for the project week is to improve the pipeline and focus on the following steps:
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 |[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
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 <h1>Progress</h1>
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2009 Winter Project Week:LocalCorticalThicknessPipeline - Revision history

Cvachet: /* Key Investigators */

Cvachet at 21:56, 12 December 2008

Cvachet at 21:53, 12 December 2008

Cvachet: New page: {| |Project Week Main Page ]] |} __NOTOC__ ===Key Investigators=== * UNC: Clement Vachet, Martin Styner, Heathe...

Cvachet: New page: {| |Project Week Main Page ]] |} NOTOC ===Key Investigators=== * UNC: Clement Vachet, Martin Styner, Heathe...